Wall clock time and date at job start Tue Mar 31 2020 06:15:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46899 * 109.47341 * 2 1 4 4 C 1.46901 * 111.00119 * 296.94381 * 3 2 1 5 5 C 1.50700 * 109.47262 * 288.57454 * 4 3 2 6 6 H 1.08000 * 119.99510 * 0.79070 * 5 4 3 7 7 C 1.37873 * 119.99833 * 180.78912 * 5 4 3 8 8 N 1.31520 * 119.99682 * 180.02562 * 7 5 4 9 9 Si 1.86794 * 120.00374 * 359.97438 * 7 5 4 10 10 H 1.48500 * 109.47043 * 90.00206 * 9 7 5 11 11 H 1.48501 * 109.47548 * 210.00296 * 9 7 5 12 12 H 1.48503 * 109.47074 * 330.00622 * 9 7 5 13 13 C 1.46903 * 110.99987 * 60.90174 * 3 2 1 14 14 C 1.50699 * 109.47215 * 66.04375 * 13 3 2 15 15 S 1.75302 * 124.29982 * 270.61696 * 14 13 3 16 16 C 1.75901 * 92.19169 * 179.97438 * 15 14 13 17 17 C 1.39862 * 130.56030 * 179.40792 * 16 15 14 18 18 C 1.37463 * 120.17645 * 179.97438 * 17 16 15 19 19 C 1.38849 * 120.18738 * 0.02562 * 18 17 16 20 20 C 1.36093 * 120.59082 * 0.02562 * 19 18 17 21 21 C 1.39735 * 109.68341 * 359.66784 * 16 15 14 22 22 C 1.31826 * 124.29876 * 90.00289 * 14 13 3 23 23 C 1.50699 * 122.55098 * 359.97438 * 22 14 13 24 24 H 1.09005 * 109.47085 * 299.78253 * 1 2 3 25 25 H 1.08998 * 109.46919 * 59.78133 * 1 2 3 26 26 H 1.09001 * 109.46899 * 179.78572 * 1 2 3 27 27 H 1.09004 * 109.47292 * 240.00091 * 2 1 3 28 28 H 1.09007 * 109.47063 * 120.00122 * 2 1 3 29 29 H 1.09002 * 109.46740 * 48.57720 * 4 3 2 30 30 H 1.08999 * 109.46769 * 168.57159 * 4 3 2 31 31 H 0.97001 * 119.99778 * 180.02562 * 8 7 5 32 32 H 1.09002 * 109.46734 * 306.04234 * 13 3 2 33 33 H 1.09001 * 109.47251 * 186.04837 * 13 3 2 34 34 H 1.07999 * 119.91092 * 0.02562 * 17 16 15 35 35 H 1.07996 * 119.89996 * 180.02562 * 18 17 16 36 36 H 1.08005 * 119.70148 * 180.02562 * 19 18 17 37 37 H 1.08002 * 119.76946 * 180.02562 * 20 19 18 38 38 H 1.08996 * 109.47607 * 269.99700 * 23 22 14 39 39 H 1.09002 * 109.47627 * 29.99847 * 23 22 14 40 40 H 1.09008 * 109.47159 * 149.99610 * 23 22 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6093 2.0885 -1.2226 5 6 2.3908 1.5550 -2.3955 6 1 3.1102 0.7628 -2.2496 7 6 2.1872 2.0782 -3.6547 8 7 2.8688 1.6122 -4.6785 9 14 0.9423 3.4478 -3.9072 10 1 1.6123 4.7625 -3.7402 11 1 0.3723 3.3528 -5.2751 12 1 -0.1473 3.3169 -2.9067 13 6 1.5664 2.1036 1.1984 14 6 2.2067 1.4969 2.4202 15 16 1.5202 0.1723 3.3406 16 6 2.8678 0.1703 4.4711 17 6 3.1116 -0.6269 5.5941 18 6 4.2534 -0.4431 6.3372 19 6 5.1706 0.5353 5.9775 20 6 4.9523 1.3227 4.8891 21 6 3.7863 1.1597 4.1103 22 6 3.3598 1.8872 2.9260 23 6 4.1739 3.0025 2.3224 24 1 -0.3633 0.5105 0.8920 25 1 -0.3633 0.5172 -0.8880 26 1 -0.3633 -1.0277 -0.0038 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 0.5445 1.9298 -1.3929 30 1 1.8044 3.1550 -1.1108 31 1 2.7259 1.9805 -5.5643 32 1 0.4822 2.0263 1.2799 33 1 1.8510 3.1531 1.1221 34 1 2.4014 -1.3895 5.8777 35 1 4.4374 -1.0615 7.2033 36 1 6.0652 0.6727 6.5668 37 1 5.6748 2.0794 4.6212 38 1 4.8610 2.5917 1.5827 39 1 3.5083 3.7192 1.8414 40 1 4.7415 3.5036 3.1067 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001138460190.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:30 Heat of formation + Delta-G solvation = 46.336744 kcal Electronic energy + Delta-G solvation = -20480.738528 eV Core-core repulsion = 17579.656229 eV Total energy + Delta-G solvation = -2901.082299 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 289.120 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.64891 -37.84340 -35.59113 -32.55525 -31.19256 -30.60886 -29.59908 -28.75757 -26.87130 -24.90290 -23.03957 -22.80733 -21.70694 -19.68399 -18.63591 -17.84413 -16.74074 -16.06514 -15.31769 -15.24486 -15.00428 -14.68101 -14.17699 -13.93118 -13.75163 -13.28551 -13.11991 -12.72243 -12.61400 -12.49336 -12.32161 -11.86031 -11.59536 -11.46299 -11.31990 -11.19469 -11.00226 -10.75767 -10.56385 -10.48838 -10.41636 -10.03309 -9.92624 -9.49160 -9.31351 -8.56983 -8.36968 -7.51794 -7.35282 -6.05066 -4.01814 0.78776 1.20376 1.63249 2.13656 2.36708 3.26709 3.34740 3.35426 3.69395 4.40858 4.56046 4.74005 4.83374 4.88993 5.17689 5.20124 5.27109 5.36293 5.43571 5.62690 5.66374 5.68469 5.75315 5.80194 5.87592 5.94668 6.01979 6.03516 6.16762 6.20743 6.33877 6.37405 6.45341 6.55346 6.70219 6.76626 6.81665 6.89866 7.03310 7.58570 7.86714 7.99753 8.65442 9.05082 9.56499 11.08221 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.027212 B = 0.004176 C = 0.003913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1028.703034 B = 6703.495597 C = 7154.605352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.052 3.948 3 N -0.515 5.515 4 C 0.158 3.842 5 C -0.504 4.504 6 H 0.080 0.920 7 C 0.069 3.931 8 N -0.900 5.900 9 Si 0.872 3.128 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.268 1.268 13 C 0.111 3.889 14 C -0.134 4.134 15 S 0.077 5.923 16 C -0.142 4.142 17 C -0.084 4.084 18 C -0.112 4.112 19 C -0.124 4.124 20 C -0.079 4.079 21 C -0.061 4.061 22 C -0.082 4.082 23 C -0.090 4.090 24 H 0.043 0.957 25 H 0.064 0.936 26 H 0.053 0.947 27 H 0.087 0.913 28 H 0.062 0.938 29 H -0.002 1.002 30 H 0.022 0.978 31 H 0.263 0.737 32 H 0.041 0.959 33 H 0.089 0.911 34 H 0.123 0.877 35 H 0.126 0.874 36 H 0.124 0.876 37 H 0.125 0.875 38 H 0.080 0.920 39 H 0.070 0.930 40 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.039 -1.148 21.073 21.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C -0.077 4.077 3 N -0.238 5.238 4 C 0.032 3.968 5 C -0.542 4.542 6 H 0.099 0.901 7 C -0.133 4.133 8 N -0.539 5.539 9 Si 0.700 3.300 10 H -0.202 1.202 11 H -0.212 1.212 12 H -0.193 1.193 13 C -0.019 4.019 14 C -0.250 4.250 15 S 0.344 5.656 16 C -0.258 4.258 17 C -0.107 4.107 18 C -0.133 4.133 19 C -0.144 4.144 20 C -0.099 4.099 21 C -0.070 4.070 22 C -0.093 4.093 23 C -0.149 4.149 24 H 0.062 0.938 25 H 0.083 0.917 26 H 0.072 0.928 27 H 0.105 0.895 28 H 0.081 0.919 29 H 0.015 0.985 30 H 0.040 0.960 31 H 0.073 0.927 32 H 0.059 0.941 33 H 0.107 0.893 34 H 0.141 0.859 35 H 0.144 0.856 36 H 0.142 0.858 37 H 0.143 0.857 38 H 0.098 0.902 39 H 0.089 0.911 40 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -0.887 -1.963 20.651 20.763 hybrid contribution -0.306 1.463 -0.173 1.505 sum -1.193 -0.500 20.478 20.518 Atomic orbital electron populations 1.22405 0.99489 1.01499 1.01451 1.22157 0.91939 0.91022 1.02535 1.62230 1.58799 1.01868 1.00869 1.20269 0.94866 0.93849 0.87796 1.20987 1.22519 1.20959 0.89746 0.90150 1.24878 0.95810 0.96627 0.95962 1.69893 1.41490 1.42772 0.99793 0.86911 0.82367 0.83146 0.77614 1.20169 1.21232 1.19331 1.20726 0.96201 0.97920 0.87070 1.23681 0.99296 1.00596 1.01405 1.84095 1.23215 1.36389 1.21929 1.22757 1.00192 1.01722 1.01105 1.20445 0.98044 0.98701 0.93486 1.20973 0.94026 0.98582 0.99703 1.20647 0.99736 0.96537 0.97496 1.20710 0.95517 0.99341 0.94323 1.19185 0.95626 0.96236 0.95950 1.19541 0.95175 0.99876 0.94757 1.20501 0.99248 0.95125 1.00051 0.93796 0.91679 0.92778 0.89457 0.91934 0.98456 0.96038 0.92697 0.94112 0.89296 0.85896 0.85612 0.85775 0.85711 0.90173 0.91070 0.92281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.26 9.27 37.16 0.34 -2.91 16 2 C 0.05 1.00 5.65 -3.83 -0.02 0.98 16 3 N -0.51 -10.54 4.65 -237.51 -1.10 -11.65 16 4 C 0.16 3.71 3.66 -4.98 -0.02 3.70 16 5 C -0.50 -14.06 9.11 -34.44 -0.31 -14.38 16 6 H 0.08 2.47 7.70 -52.49 -0.40 2.07 16 7 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 8 N -0.90 -27.39 13.96 55.43 0.77 -26.61 16 9 Si 0.87 21.18 27.45 -169.99 -4.67 16.52 16 10 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 11 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 12 H -0.27 -6.26 6.56 56.52 0.37 -5.89 16 13 C 0.11 1.90 4.82 -4.97 -0.02 1.87 16 14 C -0.13 -2.13 5.16 -36.21 -0.19 -2.32 16 15 S 0.08 1.11 21.62 -107.50 -2.32 -1.21 16 16 C -0.14 -1.99 6.48 -38.41 -0.25 -2.24 16 17 C -0.08 -0.97 10.07 -39.26 -0.40 -1.37 16 18 C -0.11 -1.11 10.03 -39.64 -0.40 -1.51 16 19 C -0.12 -1.24 9.95 -40.13 -0.40 -1.64 16 20 C -0.08 -0.93 9.73 -39.24 -0.38 -1.31 16 21 C -0.06 -0.87 6.01 -105.38 -0.63 -1.51 16 22 C -0.08 -1.24 5.97 -103.68 -0.62 -1.86 16 23 C -0.09 -1.23 9.73 36.00 0.35 -0.88 16 24 H 0.04 0.70 6.31 -51.93 -0.33 0.37 16 25 H 0.06 1.23 6.24 -51.93 -0.32 0.91 16 26 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 27 H 0.09 1.88 7.16 -51.93 -0.37 1.51 16 28 H 0.06 1.13 5.95 -51.93 -0.31 0.82 16 29 H 0.00 -0.05 5.01 -51.93 -0.26 -0.31 16 30 H 0.02 0.50 7.21 -51.93 -0.37 0.13 16 31 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 32 H 0.04 0.68 6.03 -51.93 -0.31 0.37 16 33 H 0.09 1.46 6.23 -51.93 -0.32 1.14 16 34 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 35 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16 36 H 0.12 0.90 8.06 -52.48 -0.42 0.48 16 37 H 0.12 1.23 7.64 -52.49 -0.40 0.83 16 38 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 39 H 0.07 0.96 6.48 -51.93 -0.34 0.62 16 40 H 0.06 0.66 7.59 -51.92 -0.39 0.26 16 LS Contribution 327.88 15.07 4.94 4.94 Total: -1.00 -30.57 327.88 -10.84 -41.41 By element: Atomic # 1 Polarization: 5.54 SS G_CDS: -5.42 Total: 0.12 kcal Atomic # 6 Polarization: -20.47 SS G_CDS: -3.04 Total: -23.52 kcal Atomic # 7 Polarization: -37.93 SS G_CDS: -0.33 Total: -38.26 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -4.67 Total: 16.52 kcal Atomic # 16 Polarization: 1.11 SS G_CDS: -2.32 Total: -1.21 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -30.57 -10.84 -41.41 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001138460190.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.743 kcal (2) G-P(sol) polarization free energy of solvation -30.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.406 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds