Wall clock time and date at job start Tue Mar 31 2020 06:15:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46899 * 109.47341 * 2 1 4 4 C 1.46901 * 111.00119 * 296.94381 * 3 2 1 5 5 C 1.50700 * 109.47262 * 288.57454 * 4 3 2 6 6 H 1.08000 * 119.99510 * 0.79070 * 5 4 3 7 7 C 1.37873 * 119.99833 * 180.78912 * 5 4 3 8 8 N 1.31520 * 119.99682 * 180.02562 * 7 5 4 9 9 Si 1.86794 * 120.00374 * 359.97438 * 7 5 4 10 10 H 1.48500 * 109.47043 * 90.00206 * 9 7 5 11 11 H 1.48501 * 109.47548 * 210.00296 * 9 7 5 12 12 H 1.48503 * 109.47074 * 330.00622 * 9 7 5 13 13 C 1.46903 * 110.99987 * 60.90174 * 3 2 1 14 14 C 1.50699 * 109.47215 * 66.04375 * 13 3 2 15 15 S 1.75302 * 124.29982 * 270.61696 * 14 13 3 16 16 C 1.75901 * 92.19169 * 179.97438 * 15 14 13 17 17 C 1.39862 * 130.56030 * 179.40792 * 16 15 14 18 18 C 1.37463 * 120.17645 * 179.97438 * 17 16 15 19 19 C 1.38849 * 120.18738 * 0.02562 * 18 17 16 20 20 C 1.36093 * 120.59082 * 0.02562 * 19 18 17 21 21 C 1.39735 * 109.68341 * 359.66784 * 16 15 14 22 22 C 1.31826 * 124.29876 * 90.00289 * 14 13 3 23 23 C 1.50699 * 122.55098 * 359.97438 * 22 14 13 24 24 H 1.09005 * 109.47085 * 299.78253 * 1 2 3 25 25 H 1.08998 * 109.46919 * 59.78133 * 1 2 3 26 26 H 1.09001 * 109.46899 * 179.78572 * 1 2 3 27 27 H 1.09004 * 109.47292 * 240.00091 * 2 1 3 28 28 H 1.09007 * 109.47063 * 120.00122 * 2 1 3 29 29 H 1.09002 * 109.46740 * 48.57720 * 4 3 2 30 30 H 1.08999 * 109.46769 * 168.57159 * 4 3 2 31 31 H 0.97001 * 119.99778 * 180.02562 * 8 7 5 32 32 H 1.09002 * 109.46734 * 306.04234 * 13 3 2 33 33 H 1.09001 * 109.47251 * 186.04837 * 13 3 2 34 34 H 1.07999 * 119.91092 * 0.02562 * 17 16 15 35 35 H 1.07996 * 119.89996 * 180.02562 * 18 17 16 36 36 H 1.08005 * 119.70148 * 180.02562 * 19 18 17 37 37 H 1.08002 * 119.76946 * 180.02562 * 20 19 18 38 38 H 1.08996 * 109.47607 * 269.99700 * 23 22 14 39 39 H 1.09002 * 109.47627 * 29.99847 * 23 22 14 40 40 H 1.09008 * 109.47159 * 149.99610 * 23 22 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6093 2.0885 -1.2226 5 6 2.3908 1.5550 -2.3955 6 1 3.1102 0.7628 -2.2496 7 6 2.1872 2.0782 -3.6547 8 7 2.8688 1.6122 -4.6785 9 14 0.9423 3.4478 -3.9072 10 1 1.6123 4.7625 -3.7402 11 1 0.3723 3.3528 -5.2751 12 1 -0.1473 3.3169 -2.9067 13 6 1.5664 2.1036 1.1984 14 6 2.2067 1.4969 2.4202 15 16 1.5202 0.1723 3.3406 16 6 2.8678 0.1703 4.4711 17 6 3.1116 -0.6269 5.5941 18 6 4.2534 -0.4431 6.3372 19 6 5.1706 0.5353 5.9775 20 6 4.9523 1.3227 4.8891 21 6 3.7863 1.1597 4.1103 22 6 3.3598 1.8872 2.9260 23 6 4.1739 3.0025 2.3224 24 1 -0.3633 0.5105 0.8920 25 1 -0.3633 0.5172 -0.8880 26 1 -0.3633 -1.0277 -0.0038 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 0.5445 1.9298 -1.3929 30 1 1.8044 3.1550 -1.1108 31 1 2.7259 1.9805 -5.5643 32 1 0.4822 2.0263 1.2799 33 1 1.8510 3.1531 1.1221 34 1 2.4014 -1.3895 5.8777 35 1 4.4374 -1.0615 7.2033 36 1 6.0652 0.6727 6.5668 37 1 5.6748 2.0794 4.6212 38 1 4.8610 2.5917 1.5827 39 1 3.5083 3.7192 1.8414 40 1 4.7415 3.5036 3.1067 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001138460190.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:30 Heat of formation + Delta-G solvation = 28.953365 kcal Electronic energy + Delta-G solvation = -20481.492328 eV Core-core repulsion = 17579.656229 eV Total energy + Delta-G solvation = -2901.836099 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 289.120 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.61550 -39.29220 -36.74096 -34.68022 -32.08083 -31.75288 -31.27124 -30.01880 -28.36262 -26.24333 -24.70046 -23.77951 -22.87360 -21.22149 -19.78668 -18.99891 -18.69961 -17.22092 -16.81967 -16.54431 -16.14132 -15.90887 -15.82430 -15.01457 -14.87691 -14.63081 -14.49712 -14.39258 -13.82249 -13.67993 -13.50120 -13.35073 -13.15041 -12.83547 -12.67708 -12.42989 -12.31089 -12.24003 -11.96824 -11.84935 -11.74109 -11.57894 -11.47414 -11.45131 -10.75411 -10.44261 -9.39923 -8.95025 -8.55600 -8.25989 -6.28445 -0.20137 0.32926 0.58834 1.05848 1.31486 1.35431 1.36780 1.46941 2.35360 2.80712 3.07305 3.30978 3.55042 3.84792 4.03849 4.12991 4.17503 4.22026 4.34214 4.40726 4.48250 4.53111 4.56133 4.59645 4.71146 4.74058 4.78616 4.86023 4.91623 5.04561 5.08553 5.17005 5.19063 5.32899 5.37662 5.47191 5.55836 5.57090 5.65217 5.98360 5.99808 6.33995 6.64088 6.77282 7.34320 8.91029 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.027212 B = 0.004176 C = 0.003913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1028.703034 B = 6703.495597 C = 7154.605352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.056 3.944 3 N -0.531 5.531 4 C 0.169 3.831 5 C -0.508 4.508 6 H 0.033 0.967 7 C 0.009 3.991 8 N -0.950 5.950 9 Si 0.945 3.055 10 H -0.264 1.264 11 H -0.284 1.284 12 H -0.250 1.250 13 C 0.117 3.883 14 C -0.162 4.162 15 S 0.070 5.930 16 C -0.157 4.157 17 C -0.098 4.098 18 C -0.101 4.101 19 C -0.119 4.119 20 C -0.089 4.089 21 C -0.090 4.090 22 C -0.082 4.082 23 C -0.089 4.089 24 H 0.059 0.941 25 H 0.046 0.954 26 H 0.073 0.927 27 H 0.051 0.949 28 H 0.074 0.926 29 H 0.001 0.999 30 H 0.029 0.971 31 H 0.266 0.734 32 H 0.048 0.952 33 H 0.093 0.907 34 H 0.140 0.860 35 H 0.161 0.839 36 H 0.158 0.842 37 H 0.140 0.860 38 H 0.064 0.936 39 H 0.068 0.932 40 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.431 -0.448 24.062 24.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.072 4.072 3 N -0.254 5.254 4 C 0.042 3.958 5 C -0.547 4.547 6 H 0.051 0.949 7 C -0.188 4.188 8 N -0.591 5.591 9 Si 0.768 3.232 10 H -0.189 1.189 11 H -0.210 1.210 12 H -0.173 1.173 13 C -0.012 4.012 14 C -0.277 4.277 15 S 0.337 5.663 16 C -0.273 4.273 17 C -0.121 4.121 18 C -0.121 4.121 19 C -0.139 4.139 20 C -0.109 4.109 21 C -0.098 4.098 22 C -0.094 4.094 23 C -0.148 4.148 24 H 0.078 0.922 25 H 0.065 0.935 26 H 0.092 0.908 27 H 0.070 0.930 28 H 0.093 0.907 29 H 0.019 0.981 30 H 0.047 0.953 31 H 0.075 0.925 32 H 0.066 0.934 33 H 0.111 0.889 34 H 0.158 0.842 35 H 0.179 0.821 36 H 0.176 0.824 37 H 0.158 0.842 38 H 0.083 0.917 39 H 0.087 0.913 40 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -1.280 -1.268 23.670 23.739 hybrid contribution -0.002 1.120 -0.931 1.457 sum -1.282 -0.147 22.739 22.776 Atomic orbital electron populations 1.22292 0.97547 1.02775 1.01226 1.22049 0.93521 0.90340 1.01317 1.62070 1.59791 1.02404 1.01140 1.20008 0.94056 0.94060 0.87639 1.21193 1.21880 1.19738 0.91860 0.94877 1.25806 0.98065 0.99529 0.95440 1.70059 1.43743 1.44825 1.00480 0.85753 0.79913 0.79626 0.77893 1.18914 1.20987 1.17326 1.20656 0.96680 0.97856 0.86042 1.23551 1.00339 1.02137 1.01710 1.83890 1.23946 1.36050 1.22443 1.22988 0.99835 1.02541 1.01893 1.20797 0.99318 0.98935 0.93037 1.21460 0.92730 0.98098 0.99857 1.21104 1.00671 0.95410 0.96749 1.21016 0.94995 1.00231 0.94633 1.19371 0.97055 0.96936 0.96413 1.19851 0.94849 0.99758 0.94970 1.20509 0.99011 0.94874 1.00404 0.92180 0.93490 0.90834 0.93006 0.90745 0.98098 0.95332 0.92534 0.93396 0.88869 0.84231 0.82114 0.82446 0.84199 0.91745 0.91305 0.89738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.09 9.27 71.98 0.67 -5.43 16 2 C 0.06 2.22 5.65 86.30 0.49 2.71 16 3 N -0.53 -22.15 4.65 -905.35 -4.21 -26.36 16 4 C 0.17 8.01 3.66 85.56 0.31 8.32 16 5 C -0.51 -29.49 9.11 25.60 0.23 -29.26 16 6 H 0.03 2.17 7.70 -2.91 -0.02 2.15 16 7 C 0.01 0.50 5.47 84.65 0.46 0.96 16 8 N -0.95 -59.80 13.96 21.45 0.30 -59.51 16 9 Si 0.94 43.82 27.45 68.60 1.88 45.71 16 10 H -0.26 -11.72 7.11 99.48 0.71 -11.01 16 11 H -0.28 -13.00 7.11 99.48 0.71 -12.30 16 12 H -0.25 -10.74 6.56 99.48 0.65 -10.08 16 13 C 0.12 3.97 4.82 85.56 0.41 4.38 16 14 C -0.16 -5.12 5.16 24.90 0.13 -4.99 16 15 S 0.07 1.99 21.62 -56.49 -1.22 0.77 16 16 C -0.16 -4.20 6.48 23.03 0.15 -4.05 16 17 C -0.10 -2.03 10.07 22.48 0.23 -1.80 16 18 C -0.10 -1.60 10.03 22.23 0.22 -1.38 16 19 C -0.12 -1.94 9.95 21.92 0.22 -1.72 16 20 C -0.09 -1.88 9.73 22.49 0.22 -1.66 16 21 C -0.09 -2.45 6.01 -20.36 -0.12 -2.57 16 22 C -0.08 -2.46 5.97 -18.81 -0.11 -2.57 16 23 C -0.09 -2.39 9.73 71.24 0.69 -1.69 16 24 H 0.06 1.83 6.31 -2.38 -0.02 1.82 16 25 H 0.05 1.76 6.24 -2.39 -0.01 1.74 16 26 H 0.07 2.17 8.14 -2.39 -0.02 2.16 16 27 H 0.05 2.38 7.16 -2.38 -0.02 2.36 16 28 H 0.07 2.74 5.95 -2.38 -0.01 2.73 16 29 H 0.00 0.07 5.01 -2.39 -0.01 0.06 16 30 H 0.03 1.32 7.21 -2.39 -0.02 1.30 16 31 H 0.27 15.60 8.31 -92.71 -0.77 14.83 16 32 H 0.05 1.55 6.03 -2.39 -0.01 1.54 16 33 H 0.09 3.02 6.23 -2.39 -0.01 3.01 16 34 H 0.14 2.31 8.06 -2.91 -0.02 2.28 16 35 H 0.16 1.42 8.06 -2.91 -0.02 1.40 16 36 H 0.16 1.50 8.06 -2.91 -0.02 1.47 16 37 H 0.14 2.40 7.64 -2.91 -0.02 2.38 16 38 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 39 H 0.07 1.84 6.48 -2.39 -0.02 1.82 16 40 H 0.08 1.76 7.59 -2.38 -0.02 1.74 16 Total: -1.00 -68.79 327.88 1.94 -66.85 By element: Atomic # 1 Polarization: 12.30 SS G_CDS: 0.99 Total: 13.29 kcal Atomic # 6 Polarization: -44.95 SS G_CDS: 4.20 Total: -40.75 kcal Atomic # 7 Polarization: -81.96 SS G_CDS: -3.91 Total: -85.87 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 1.88 Total: 45.71 kcal Atomic # 16 Polarization: 1.99 SS G_CDS: -1.22 Total: 0.77 kcal Total: -68.79 1.94 -66.85 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001138460190.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.800 kcal (2) G-P(sol) polarization free energy of solvation -68.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.847 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds