Wall clock time and date at job start Tue Mar 31 2020 06:47:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86803 * 119.99870 * 2 1 4 4 H 1.48501 * 109.47293 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47387 * 299.99667 * 3 2 1 6 6 H 1.48498 * 109.47096 * 60.00128 * 3 2 1 7 7 C 1.37877 * 120.00506 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00411 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99669 * 0.02562 * 7 2 1 10 10 C 1.53935 * 113.73364 * 81.23515 * 9 7 2 11 11 N 1.48296 * 86.06285 * 138.12975 * 10 9 7 12 12 C 1.46902 * 111.00409 * 222.41947 * 11 10 9 13 13 C 1.50702 * 109.47215 * 269.34877 * 12 11 10 14 14 C 1.38255 * 119.88976 * 90.00049 * 13 12 11 15 15 C 1.38342 * 120.22230 * 180.02562 * 14 13 12 16 16 C 1.38470 * 119.71568 * 0.02562 * 15 14 13 17 17 C 1.38749 * 120.05626 * 359.96237 * 16 15 14 18 18 C 1.38339 * 119.89964 * 269.73099 * 13 12 11 19 19 O 1.36468 * 119.61353 * 180.02562 * 17 16 15 20 20 C 1.42905 * 115.92389 * 68.28145 * 19 17 16 21 21 C 1.52060 * 110.76344 * 275.58077 * 20 19 17 22 22 C 1.52065 * 112.37700 * 64.81728 * 21 20 19 23 23 O 1.36468 * 120.32802 * 179.97438 * 16 15 14 24 24 C 1.47961 * 90.75572 * 335.31010 * 11 10 9 25 25 H 0.96995 * 120.00309 * 0.02562 * 1 2 3 26 26 H 1.09002 * 112.93816 * 309.66794 * 9 7 2 27 27 H 1.09001 * 113.76001 * 252.50560 * 10 9 7 28 28 H 1.09000 * 113.75996 * 23.86376 * 10 9 7 29 29 H 1.09001 * 109.47358 * 29.35236 * 12 11 10 30 30 H 1.09004 * 109.47314 * 149.35402 * 12 11 10 31 31 H 1.08000 * 119.89206 * 359.97438 * 14 13 12 32 32 H 1.08004 * 120.14540 * 179.97438 * 15 14 13 33 33 H 1.08008 * 120.14025 * 359.94589 * 18 13 12 34 34 H 1.09000 * 109.22307 * 35.91281 * 20 19 17 35 35 H 1.09007 * 109.21823 * 155.25562 * 20 19 17 36 36 H 1.08998 * 108.90446 * 185.56177 * 21 20 19 37 37 H 1.09003 * 108.90628 * 304.16579 * 21 20 19 38 38 H 1.08998 * 109.21565 * 55.52628 * 22 21 20 39 39 H 1.08998 * 109.21703 * 174.85517 * 22 21 20 40 40 H 1.09007 * 113.75652 * 270.36911 * 24 11 10 41 41 H 1.08993 * 113.76177 * 139.00817 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 0.7559 -2.9287 -1.3923 11 7 1.1880 -4.2953 -1.0119 12 6 1.8749 -4.9600 -2.1275 13 6 0.8703 -5.7197 -2.9549 14 6 0.2401 -5.0970 -4.0164 15 6 -0.6836 -5.7877 -4.7802 16 6 -0.9758 -7.1069 -4.4771 17 6 -0.3432 -7.7317 -3.4120 18 6 0.5856 -7.0395 -2.6535 19 8 -0.6375 -9.0323 -3.1217 20 6 -0.2069 -9.9996 -4.0814 21 6 -1.2247 -10.1363 -5.2029 22 6 -1.3597 -8.8615 -6.0208 23 8 -1.8854 -7.7999 -5.2220 24 6 2.1611 -3.7399 -0.0455 25 1 -0.4850 0.8400 -0.0004 26 1 0.4835 -2.5465 0.7729 27 1 -0.3212 -2.8279 -1.5258 28 1 1.3294 -2.4995 -2.2139 29 1 2.3663 -4.2117 -2.7493 30 1 2.6199 -5.6522 -1.7349 31 1 0.4692 -4.0676 -4.2495 32 1 -1.1755 -5.2999 -5.6088 33 1 1.0824 -7.5264 -1.8273 34 1 0.7495 -9.6877 -4.5010 35 1 -0.0844 -10.9641 -3.5886 36 1 -0.9168 -10.9479 -5.8622 37 1 -2.1951 -10.3816 -4.7712 38 1 -0.3794 -8.5733 -6.4003 39 1 -2.0295 -9.0437 -6.8612 40 1 3.1447 -3.5475 -0.4741 41 1 2.2059 -4.2869 0.8962 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001142250641.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:20 Heat of formation + Delta-G solvation = -15.284043 kcal Electronic energy + Delta-G solvation = -22639.207265 eV Core-core repulsion = 19292.700017 eV Total energy + Delta-G solvation = -3346.507248 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.86816 -38.93913 -37.49958 -37.43526 -33.36951 -32.62558 -31.30736 -29.99643 -28.00243 -26.72532 -25.30823 -24.93189 -23.02074 -22.42189 -21.74839 -20.73065 -18.58396 -18.40808 -17.01745 -16.97474 -16.44075 -15.50527 -15.47735 -14.98061 -14.85071 -14.31627 -14.29619 -14.18320 -13.89808 -13.83835 -13.37082 -13.02504 -12.34461 -12.11375 -11.96865 -11.69721 -11.59416 -11.32351 -11.09703 -11.00038 -10.95627 -10.57713 -10.55003 -10.29653 -9.97105 -9.75269 -9.26194 -9.01708 -8.70618 -8.47208 -8.23788 -7.89098 -6.05184 -4.10132 1.16675 1.32901 3.27183 3.35546 3.36218 3.37687 3.38946 3.86157 4.38862 4.39996 4.48380 4.85126 4.87948 4.89084 5.01939 5.06127 5.15144 5.25371 5.27515 5.32423 5.42208 5.46869 5.54478 5.67286 5.70825 5.86864 5.99946 6.13491 6.25081 6.37310 6.38874 6.46413 6.62953 6.64418 6.73330 6.78981 7.07040 7.16554 7.22103 7.57560 7.73029 7.90505 8.06353 8.36273 8.92751 9.54963 11.04134 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.036800 B = 0.003132 C = 0.002997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 760.682349 B = 8939.110050 C = 9341.047454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.066 3.934 3 Si 0.890 3.110 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.283 1.283 7 C -0.518 4.518 8 H 0.058 0.942 9 C 0.039 3.961 10 C 0.014 3.986 11 N -0.485 5.485 12 C 0.056 3.944 13 C -0.048 4.048 14 C -0.101 4.101 15 C -0.115 4.115 16 C 0.054 3.946 17 C 0.062 3.938 18 C -0.101 4.101 19 O -0.319 6.319 20 C 0.060 3.940 21 C -0.187 4.187 22 C 0.060 3.940 23 O -0.320 6.320 24 C -0.002 4.002 25 H 0.261 0.739 26 H 0.059 0.941 27 H 0.068 0.932 28 H 0.055 0.945 29 H 0.051 0.949 30 H 0.072 0.928 31 H 0.131 0.869 32 H 0.132 0.868 33 H 0.133 0.867 34 H 0.055 0.945 35 H 0.101 0.899 36 H 0.087 0.913 37 H 0.082 0.918 38 H 0.055 0.945 39 H 0.100 0.900 40 H 0.055 0.945 41 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.884 -18.221 -12.501 22.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.137 4.137 3 Si 0.717 3.283 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.209 1.209 7 C -0.557 4.557 8 H 0.076 0.924 9 C 0.020 3.980 10 C -0.114 4.114 11 N -0.208 5.208 12 C -0.072 4.072 13 C -0.049 4.049 14 C -0.119 4.119 15 C -0.134 4.134 16 C 0.010 3.990 17 C 0.018 3.982 18 C -0.120 4.120 19 O -0.236 6.236 20 C -0.015 4.015 21 C -0.224 4.224 22 C -0.015 4.015 23 O -0.237 6.237 24 C -0.130 4.130 25 H 0.071 0.929 26 H 0.077 0.923 27 H 0.086 0.914 28 H 0.073 0.927 29 H 0.069 0.931 30 H 0.090 0.910 31 H 0.149 0.851 32 H 0.150 0.850 33 H 0.150 0.850 34 H 0.074 0.926 35 H 0.119 0.881 36 H 0.105 0.895 37 H 0.101 0.899 38 H 0.074 0.926 39 H 0.118 0.882 40 H 0.074 0.926 41 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -0.033 -18.648 -12.149 22.256 hybrid contribution 1.168 1.291 -0.661 1.862 sum 1.135 -17.357 -12.810 21.602 Atomic orbital electron populations 1.69976 1.05954 1.26620 1.49689 1.25016 0.94812 0.99121 0.94724 0.86580 0.80155 0.83873 0.77650 1.19761 1.21015 1.20929 1.21125 0.92781 0.90355 1.51414 0.92418 1.20307 0.93730 0.90989 0.93015 1.24186 1.00171 0.86008 1.01057 1.68633 1.25939 1.17324 1.08889 1.21610 0.93911 0.97802 0.93872 1.19802 0.97521 0.92929 0.94614 1.21058 0.95939 0.99941 0.94987 1.21031 0.98005 0.93434 1.00913 1.19081 0.94189 0.92439 0.93283 1.19080 0.97243 0.85279 0.96563 1.20938 0.96262 0.94700 1.00076 1.86387 1.78575 1.12665 1.45936 1.22589 0.96108 0.92491 0.90350 1.22471 1.02195 0.99027 0.98743 1.22584 0.99919 0.86295 0.92739 1.86370 1.31869 1.46592 1.58829 1.24090 0.95303 0.98005 0.95645 0.92918 0.92314 0.91380 0.92716 0.93050 0.90962 0.85123 0.85015 0.84959 0.92608 0.88117 0.89471 0.89902 0.92634 0.88173 0.92634 0.91530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.43 13.29 55.43 0.74 -24.69 16 2 C 0.07 1.81 5.46 -17.82 -0.10 1.71 16 3 Si 0.89 20.90 29.54 -169.99 -5.02 15.88 16 4 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 5 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 6 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 7 C -0.52 -13.96 8.77 -34.44 -0.30 -14.26 16 8 H 0.06 1.53 7.81 -52.49 -0.41 1.12 16 9 C 0.04 0.96 3.60 -90.84 -0.33 0.63 16 10 C 0.01 0.33 7.53 -2.57 -0.02 0.31 16 11 N -0.49 -9.74 6.15 -239.49 -1.47 -11.22 16 12 C 0.06 0.93 4.92 -4.97 -0.02 0.91 16 13 C -0.05 -0.75 5.44 -104.58 -0.57 -1.32 16 14 C -0.10 -1.49 9.69 -39.54 -0.38 -1.87 16 15 C -0.12 -1.62 10.01 -39.46 -0.39 -2.01 16 16 C 0.05 0.80 5.73 -39.31 -0.23 0.57 16 17 C 0.06 0.93 5.73 -39.31 -0.23 0.71 16 18 C -0.10 -1.52 9.65 -39.46 -0.38 -1.90 16 19 O -0.32 -4.52 10.16 -36.70 -0.37 -4.89 16 20 C 0.06 0.57 6.51 36.68 0.24 0.81 16 21 C -0.19 -1.52 5.92 -27.69 -0.16 -1.68 16 22 C 0.06 0.56 6.51 36.68 0.24 0.80 16 23 O -0.32 -4.41 10.16 -36.70 -0.37 -4.79 16 24 C 0.00 -0.04 7.50 -2.76 -0.02 -0.06 16 25 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 26 H 0.06 1.62 8.14 -51.93 -0.42 1.19 16 27 H 0.07 1.64 8.14 -51.93 -0.42 1.22 16 28 H 0.05 1.23 7.43 -51.93 -0.39 0.85 16 29 H 0.05 0.84 7.32 -51.93 -0.38 0.46 16 30 H 0.07 1.08 8.02 -51.93 -0.42 0.66 16 31 H 0.13 1.84 8.06 -52.49 -0.42 1.42 16 32 H 0.13 1.58 8.06 -52.48 -0.42 1.16 16 33 H 0.13 1.87 8.06 -52.48 -0.42 1.44 16 34 H 0.06 0.49 7.93 -51.93 -0.41 0.08 16 35 H 0.10 0.73 8.14 -51.92 -0.42 0.31 16 36 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 38 H 0.06 0.48 7.93 -51.93 -0.41 0.07 16 39 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.06 1.10 7.88 -51.92 -0.41 0.70 16 41 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 LS Contribution 337.41 15.07 5.08 5.08 Total: -1.00 -30.44 337.41 -10.26 -40.70 By element: Atomic # 1 Polarization: 6.78 SS G_CDS: -6.19 Total: 0.59 kcal Atomic # 6 Polarization: -14.01 SS G_CDS: -2.66 Total: -16.67 kcal Atomic # 7 Polarization: -35.17 SS G_CDS: -0.74 Total: -35.91 kcal Atomic # 8 Polarization: -8.93 SS G_CDS: -0.75 Total: -9.68 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -30.44 -10.26 -40.70 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001142250641.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.415 kcal (2) G-P(sol) polarization free energy of solvation -30.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds