Wall clock time and date at job start Tue Mar 31 2020 06:47:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86803 * 119.99870 * 2 1 4 4 H 1.48501 * 109.47293 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47387 * 299.99667 * 3 2 1 6 6 H 1.48498 * 109.47096 * 60.00128 * 3 2 1 7 7 C 1.37877 * 120.00506 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00411 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99669 * 0.02562 * 7 2 1 10 10 C 1.53935 * 113.73364 * 81.23515 * 9 7 2 11 11 N 1.48296 * 86.06285 * 138.12975 * 10 9 7 12 12 C 1.46902 * 111.00409 * 222.41947 * 11 10 9 13 13 C 1.50702 * 109.47215 * 269.34877 * 12 11 10 14 14 C 1.38255 * 119.88976 * 90.00049 * 13 12 11 15 15 C 1.38342 * 120.22230 * 180.02562 * 14 13 12 16 16 C 1.38470 * 119.71568 * 0.02562 * 15 14 13 17 17 C 1.38749 * 120.05626 * 359.96237 * 16 15 14 18 18 C 1.38339 * 119.89964 * 269.73099 * 13 12 11 19 19 O 1.36468 * 119.61353 * 180.02562 * 17 16 15 20 20 C 1.42905 * 115.92389 * 68.28145 * 19 17 16 21 21 C 1.52060 * 110.76344 * 275.58077 * 20 19 17 22 22 C 1.52065 * 112.37700 * 64.81728 * 21 20 19 23 23 O 1.36468 * 120.32802 * 179.97438 * 16 15 14 24 24 C 1.47961 * 90.75572 * 335.31010 * 11 10 9 25 25 H 0.96995 * 120.00309 * 0.02562 * 1 2 3 26 26 H 1.09002 * 112.93816 * 309.66794 * 9 7 2 27 27 H 1.09001 * 113.76001 * 252.50560 * 10 9 7 28 28 H 1.09000 * 113.75996 * 23.86376 * 10 9 7 29 29 H 1.09001 * 109.47358 * 29.35236 * 12 11 10 30 30 H 1.09004 * 109.47314 * 149.35402 * 12 11 10 31 31 H 1.08000 * 119.89206 * 359.97438 * 14 13 12 32 32 H 1.08004 * 120.14540 * 179.97438 * 15 14 13 33 33 H 1.08008 * 120.14025 * 359.94589 * 18 13 12 34 34 H 1.09000 * 109.22307 * 35.91281 * 20 19 17 35 35 H 1.09007 * 109.21823 * 155.25562 * 20 19 17 36 36 H 1.08998 * 108.90446 * 185.56177 * 21 20 19 37 37 H 1.09003 * 108.90628 * 304.16579 * 21 20 19 38 38 H 1.08998 * 109.21565 * 55.52628 * 22 21 20 39 39 H 1.08998 * 109.21703 * 174.85517 * 22 21 20 40 40 H 1.09007 * 113.75652 * 270.36911 * 24 11 10 41 41 H 1.08993 * 113.76177 * 139.00817 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 0.7559 -2.9287 -1.3923 11 7 1.1880 -4.2953 -1.0119 12 6 1.8749 -4.9600 -2.1275 13 6 0.8703 -5.7197 -2.9549 14 6 0.2401 -5.0970 -4.0164 15 6 -0.6836 -5.7877 -4.7802 16 6 -0.9758 -7.1069 -4.4771 17 6 -0.3432 -7.7317 -3.4120 18 6 0.5856 -7.0395 -2.6535 19 8 -0.6375 -9.0323 -3.1217 20 6 -0.2069 -9.9996 -4.0814 21 6 -1.2247 -10.1363 -5.2029 22 6 -1.3597 -8.8615 -6.0208 23 8 -1.8854 -7.7999 -5.2220 24 6 2.1611 -3.7399 -0.0455 25 1 -0.4850 0.8400 -0.0004 26 1 0.4835 -2.5465 0.7729 27 1 -0.3212 -2.8279 -1.5258 28 1 1.3294 -2.4995 -2.2139 29 1 2.3663 -4.2117 -2.7493 30 1 2.6199 -5.6522 -1.7349 31 1 0.4692 -4.0676 -4.2495 32 1 -1.1755 -5.2999 -5.6088 33 1 1.0824 -7.5264 -1.8273 34 1 0.7495 -9.6877 -4.5010 35 1 -0.0844 -10.9641 -3.5886 36 1 -0.9168 -10.9479 -5.8622 37 1 -2.1951 -10.3816 -4.7712 38 1 -0.3794 -8.5733 -6.4003 39 1 -2.0295 -9.0437 -6.8612 40 1 3.1447 -3.5475 -0.4741 41 1 2.2059 -4.2869 0.8962 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001142250641.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:19 Heat of formation + Delta-G solvation = -34.366840 kcal Electronic energy + Delta-G solvation = -22640.034757 eV Core-core repulsion = 19292.700017 eV Total energy + Delta-G solvation = -3347.334740 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.87906 -40.51009 -38.60823 -38.47286 -34.84313 -34.00177 -32.58157 -31.16302 -29.50340 -27.70424 -26.89138 -26.66221 -24.36507 -23.71195 -22.54029 -21.94900 -20.41010 -19.37179 -18.64600 -17.99084 -17.82391 -16.77315 -16.43917 -16.36206 -16.33767 -15.83070 -15.74806 -15.13926 -15.02975 -14.92617 -14.55039 -14.09160 -13.90722 -13.64804 -13.28907 -13.09348 -12.92569 -12.85406 -12.69115 -12.32816 -12.21482 -11.96191 -11.77495 -11.57062 -11.36629 -11.11746 -10.92327 -10.91216 -10.51876 -9.82061 -9.59073 -9.36568 -8.13137 -6.24933 0.06340 0.22125 1.42283 1.44432 1.55695 2.32926 2.43853 2.47894 2.78247 3.16570 3.37336 3.72325 3.72747 3.85724 3.90184 4.10409 4.21804 4.27880 4.30421 4.34746 4.37814 4.43158 4.49862 4.54902 4.64450 4.72042 4.78274 4.80288 4.89131 4.95617 5.00888 5.09048 5.15163 5.27508 5.27857 5.41153 5.58462 5.65362 5.66826 5.87179 6.14459 6.31235 6.39124 6.57172 6.84724 7.43777 8.96378 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.036800 B = 0.003132 C = 0.002997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 760.682349 B = 8939.110050 C = 9341.047454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.013 3.987 3 Si 0.957 3.043 4 H -0.263 1.263 5 H -0.281 1.281 6 H -0.282 1.282 7 C -0.530 4.530 8 H 0.061 0.939 9 C 0.018 3.982 10 C 0.029 3.971 11 N -0.487 5.487 12 C 0.060 3.940 13 C -0.062 4.062 14 C -0.108 4.108 15 C -0.118 4.118 16 C 0.050 3.950 17 C 0.056 3.944 18 C -0.107 4.107 19 O -0.342 6.342 20 C 0.048 3.952 21 C -0.182 4.182 22 C 0.049 3.951 23 O -0.341 6.341 24 C 0.014 3.986 25 H 0.262 0.738 26 H 0.021 0.979 27 H 0.044 0.956 28 H 0.056 0.944 29 H 0.055 0.945 30 H 0.093 0.907 31 H 0.133 0.867 32 H 0.149 0.851 33 H 0.139 0.861 34 H 0.063 0.937 35 H 0.124 0.876 36 H 0.124 0.876 37 H 0.072 0.928 38 H 0.063 0.937 39 H 0.125 0.875 40 H 0.069 0.931 41 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.065 -19.493 -13.840 23.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.186 4.186 3 Si 0.783 3.217 4 H -0.187 1.187 5 H -0.207 1.207 6 H -0.208 1.208 7 C -0.568 4.568 8 H 0.079 0.921 9 C -0.001 4.001 10 C -0.100 4.100 11 N -0.210 5.210 12 C -0.068 4.068 13 C -0.062 4.062 14 C -0.127 4.127 15 C -0.136 4.136 16 C 0.006 3.994 17 C 0.012 3.988 18 C -0.126 4.126 19 O -0.259 6.259 20 C -0.026 4.026 21 C -0.220 4.220 22 C -0.025 4.025 23 O -0.258 6.258 24 C -0.114 4.114 25 H 0.071 0.929 26 H 0.039 0.961 27 H 0.063 0.937 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.111 0.889 31 H 0.151 0.849 32 H 0.167 0.833 33 H 0.157 0.843 34 H 0.081 0.919 35 H 0.142 0.858 36 H 0.142 0.858 37 H 0.091 0.909 38 H 0.081 0.919 39 H 0.143 0.857 40 H 0.087 0.913 41 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 1.166 -19.948 -13.496 24.113 hybrid contribution 0.750 1.528 -0.293 1.727 sum 1.915 -18.419 -13.789 23.088 Atomic orbital electron populations 1.70108 1.07555 1.27441 1.50993 1.25832 0.95571 1.02700 0.94487 0.85521 0.79226 0.79468 0.77526 1.18674 1.20653 1.20832 1.21466 0.93080 0.91434 1.50824 0.92082 1.20294 0.94150 0.92444 0.93221 1.23874 0.98658 0.87802 0.99714 1.68541 1.26536 1.15727 1.10168 1.21619 0.94339 0.98017 0.92858 1.19746 0.98099 0.93258 0.95145 1.21157 0.96252 1.00143 0.95121 1.21211 0.97803 0.93365 1.01250 1.19241 0.93892 0.92787 0.93444 1.19199 0.97157 0.85996 0.96485 1.21018 0.96631 0.94591 1.00350 1.86336 1.78979 1.12738 1.47837 1.22953 0.96823 0.92275 0.90505 1.22463 1.01321 0.99490 0.98684 1.22948 1.00968 0.85571 0.93038 1.86323 1.32454 1.47827 1.59207 1.23951 0.95125 0.95753 0.96590 0.92943 0.96080 0.93703 0.92616 0.92655 0.88884 0.84887 0.83321 0.84348 0.91885 0.85830 0.85809 0.90917 0.91878 0.85724 0.91302 0.90281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.21 13.29 21.45 0.28 -53.92 16 2 C 0.01 0.73 5.46 84.66 0.46 1.19 16 3 Si 0.96 42.97 29.54 68.60 2.03 45.00 16 4 H -0.26 -11.25 7.11 99.48 0.71 -10.54 16 5 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 6 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 7 C -0.53 -28.69 8.77 25.60 0.22 -28.46 16 8 H 0.06 3.19 7.81 -2.91 -0.02 3.17 16 9 C 0.02 0.91 3.60 -10.89 -0.04 0.88 16 10 C 0.03 1.32 7.53 86.34 0.65 1.97 16 11 N -0.49 -19.39 6.15 -911.59 -5.61 -24.99 16 12 C 0.06 1.89 4.92 85.56 0.42 2.31 16 13 C -0.06 -1.89 5.44 -19.84 -0.11 -2.00 16 14 C -0.11 -3.16 9.69 22.30 0.22 -2.95 16 15 C -0.12 -3.23 10.01 22.35 0.22 -3.00 16 16 C 0.05 1.45 5.73 22.45 0.13 1.57 16 17 C 0.06 1.63 5.73 22.45 0.13 1.76 16 18 C -0.11 -3.15 9.65 22.35 0.22 -2.94 16 19 O -0.34 -9.33 10.16 -84.17 -0.86 -10.18 16 20 C 0.05 0.82 6.51 71.67 0.47 1.29 16 21 C -0.18 -2.49 5.92 29.98 0.18 -2.31 16 22 C 0.05 0.80 6.51 71.67 0.47 1.27 16 23 O -0.34 -9.00 10.16 -84.18 -0.86 -9.85 16 24 C 0.01 0.57 7.50 86.41 0.65 1.22 16 25 H 0.26 14.57 8.31 -92.71 -0.77 13.80 16 26 H 0.02 1.21 8.14 -2.39 -0.02 1.19 16 27 H 0.04 2.24 8.14 -2.39 -0.02 2.22 16 28 H 0.06 2.53 7.43 -2.39 -0.02 2.51 16 29 H 0.06 1.73 7.32 -2.39 -0.02 1.71 16 30 H 0.09 2.57 8.02 -2.39 -0.02 2.55 16 31 H 0.13 3.73 8.06 -2.91 -0.02 3.71 16 32 H 0.15 3.43 8.06 -2.91 -0.02 3.40 16 33 H 0.14 3.78 8.06 -2.91 -0.02 3.76 16 34 H 0.06 0.97 7.93 -2.39 -0.02 0.96 16 35 H 0.12 1.48 8.14 -2.38 -0.02 1.46 16 36 H 0.12 0.79 8.14 -2.39 -0.02 0.78 16 37 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 38 H 0.06 0.94 7.93 -2.39 -0.02 0.92 16 39 H 0.12 1.40 8.14 -2.39 -0.02 1.38 16 40 H 0.07 2.61 7.88 -2.38 -0.02 2.59 16 41 H 0.08 3.00 8.14 -2.39 -0.02 2.98 16 Total: -1.00 -66.25 337.41 0.29 -65.96 By element: Atomic # 1 Polarization: 15.18 SS G_CDS: 1.01 Total: 16.19 kcal Atomic # 6 Polarization: -32.48 SS G_CDS: 4.28 Total: -28.20 kcal Atomic # 7 Polarization: -73.59 SS G_CDS: -5.32 Total: -78.92 kcal Atomic # 8 Polarization: -18.32 SS G_CDS: -1.71 Total: -20.03 kcal Atomic # 14 Polarization: 42.97 SS G_CDS: 2.03 Total: 45.00 kcal Total: -66.25 0.29 -65.96 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001142250641.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.592 kcal (2) G-P(sol) polarization free energy of solvation -66.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds