Wall clock time and date at job start Tue Mar 31 2020 05:51:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53008 * 109.47142 * 2 1 4 4 C 1.52995 * 109.47142 * 179.97438 * 3 2 1 5 5 N 1.46507 * 109.46958 * 179.97438 * 4 3 2 6 6 C 1.36806 * 119.99813 * 264.88626 * 5 4 3 7 7 H 1.08001 * 119.99709 * 139.86863 * 6 5 4 8 8 C 1.39045 * 119.99740 * 319.87416 * 6 5 4 9 9 N 1.31381 * 119.99358 * 163.89307 * 8 6 5 10 10 Si 1.86793 * 120.00393 * 343.89519 * 8 6 5 11 11 H 1.48502 * 109.47340 * 93.62470 * 10 8 6 12 12 H 1.48497 * 109.47272 * 213.62677 * 10 8 6 13 13 H 1.48504 * 109.47118 * 333.62526 * 10 8 6 14 14 C 1.34774 * 120.00202 * 84.88837 * 5 4 3 15 15 O 1.21752 * 119.99641 * 5.48903 * 14 5 4 16 16 C 1.46597 * 119.99877 * 185.48858 * 14 5 4 17 17 N 1.32494 * 126.41353 * 354.33813 * 16 14 5 18 18 N 1.28735 * 109.96389 * 179.97438 * 17 16 14 19 19 C 1.32784 * 109.69482 * 359.97438 * 18 17 16 20 20 C 1.40563 * 134.01550 * 180.02562 * 19 18 17 21 21 N 1.31309 * 119.63894 * 179.97438 * 20 19 18 22 22 C 1.33226 * 121.29092 * 0.02562 * 21 20 19 23 23 C 1.35490 * 121.15988 * 359.97438 * 22 21 20 24 24 N 1.35911 * 119.68757 * 0.02562 * 23 22 21 25 25 H 1.09001 * 109.47317 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47703 * 300.00566 * 1 2 3 27 27 H 1.09007 * 109.47043 * 60.00505 * 1 2 3 28 28 H 1.08998 * 109.47315 * 240.00048 * 2 1 3 29 29 H 1.08999 * 109.47249 * 119.99219 * 2 1 3 30 30 H 1.09003 * 109.47284 * 59.99178 * 3 2 1 31 31 H 1.09007 * 109.46739 * 299.99681 * 3 2 1 32 32 H 1.08998 * 109.47262 * 59.99494 * 4 3 2 33 33 H 1.09007 * 109.47043 * 299.99494 * 4 3 2 34 34 H 0.97000 * 119.99402 * 179.97438 * 9 8 6 35 35 H 1.07994 * 120.18380 * 359.93961 * 20 19 18 36 36 H 1.08007 * 119.42115 * 179.71146 * 22 21 20 37 37 H 1.07992 * 120.15634 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5699 1.4426 0.0006 5 7 4.0582 2.8239 0.0000 6 6 4.3863 3.4329 -1.1803 7 1 4.1259 4.4681 -1.3444 8 6 5.0548 2.7189 -2.1686 9 7 5.0931 3.1786 -3.3988 10 14 5.8984 1.1065 -1.7473 11 1 4.9713 -0.0221 -2.0153 12 1 7.1182 0.9536 -2.5803 13 1 6.2766 1.1061 -0.3112 14 6 4.1843 3.4946 1.1622 15 8 3.9887 2.9230 2.2192 16 6 4.5570 4.9124 1.1535 17 7 4.8997 5.6290 0.0931 18 7 5.1642 6.8383 0.4467 19 6 5.0049 6.9659 1.7587 20 6 5.1514 8.0337 2.6611 21 7 4.9133 7.8420 3.9381 22 6 4.5344 6.6512 4.4002 23 6 4.3801 5.5931 3.5682 24 7 4.6151 5.7428 2.2380 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5137 0.8900 30 1 1.6765 1.9565 0.8899 31 1 1.6766 1.9564 -0.8901 32 1 3.9337 0.9285 -0.8890 33 1 3.9329 0.9289 0.8910 34 1 5.5597 2.6807 -4.0881 35 1 5.4586 9.0063 2.3062 36 1 4.3510 6.5262 5.4572 37 1 4.0727 4.6350 3.9603 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001152026060.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:18 Heat of formation + Delta-G solvation = 102.361249 kcal Electronic energy + Delta-G solvation = -23085.087472 eV Core-core repulsion = 19672.434114 eV Total energy + Delta-G solvation = -3412.653358 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.128 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.33835 -39.23730 -38.69161 -35.87917 -34.50119 -34.13865 -32.08495 -31.41215 -30.09551 -28.60543 -25.38209 -25.04329 -24.41135 -23.25664 -22.62671 -20.89859 -19.87946 -18.56173 -17.83846 -17.28069 -16.59537 -16.33537 -15.62335 -15.16700 -14.90604 -14.83255 -14.54706 -14.14561 -13.46051 -13.32307 -13.02515 -12.94771 -12.78983 -12.41925 -12.02653 -11.77820 -11.64924 -11.43344 -11.30583 -10.81727 -10.74096 -10.58179 -10.36343 -10.19387 -9.94084 -9.83102 -9.54953 -9.47123 -9.02609 -8.23616 -7.94619 -6.57393 -4.17434 0.47868 0.96599 2.24846 2.53385 2.95911 3.13915 3.17936 3.49208 3.86522 3.92699 3.98351 4.12773 4.22663 4.36175 4.77223 5.02088 5.09100 5.21816 5.24762 5.32635 5.39863 5.52234 5.62444 5.76738 5.97147 5.98765 6.05125 6.07961 6.10346 6.17933 6.24352 6.36692 6.60612 6.72143 6.79793 7.12707 7.55868 7.84179 8.29451 8.57742 8.85178 9.09352 9.31748 10.50365 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.016049 B = 0.005980 C = 0.004834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1744.254696 B = 4681.490784 C = 5790.548586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.123 4.123 3 C -0.127 4.127 4 C 0.100 3.900 5 N -0.415 5.415 6 C -0.336 4.336 7 H 0.141 0.859 8 C 0.073 3.927 9 N -0.838 5.838 10 Si 0.873 3.127 11 H -0.269 1.269 12 H -0.283 1.283 13 H -0.261 1.261 14 C 0.534 3.466 15 O -0.603 6.603 16 C 0.142 3.858 17 N -0.162 5.162 18 N -0.267 5.267 19 C 0.118 3.882 20 C 0.191 3.809 21 N -0.454 5.454 22 C 0.017 3.983 23 C 0.052 3.948 24 N -0.356 5.356 25 H 0.050 0.950 26 H 0.052 0.948 27 H 0.054 0.946 28 H 0.061 0.939 29 H 0.060 0.940 30 H 0.063 0.937 31 H 0.072 0.928 32 H 0.075 0.925 33 H 0.074 0.926 34 H 0.279 0.721 35 H 0.193 0.807 36 H 0.181 0.819 37 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.545 0.517 9.799 10.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.161 4.161 3 C -0.165 4.165 4 C -0.022 4.022 5 N -0.131 5.131 6 C -0.465 4.465 7 H 0.158 0.842 8 C -0.137 4.137 9 N -0.472 5.472 10 Si 0.700 3.300 11 H -0.196 1.196 12 H -0.210 1.210 13 H -0.186 1.186 14 C 0.322 3.678 15 O -0.490 6.490 16 C -0.118 4.118 17 N -0.008 5.008 18 N -0.120 5.120 19 C -0.131 4.131 20 C 0.006 3.994 21 N -0.166 5.166 22 C -0.122 4.122 23 C -0.075 4.075 24 N -0.037 5.037 25 H 0.069 0.931 26 H 0.071 0.929 27 H 0.073 0.927 28 H 0.080 0.920 29 H 0.079 0.921 30 H 0.082 0.918 31 H 0.091 0.909 32 H 0.093 0.907 33 H 0.092 0.908 34 H 0.090 0.910 35 H 0.209 0.791 36 H 0.198 0.802 37 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -3.261 0.970 9.273 9.877 hybrid contribution 0.211 -1.848 0.633 1.964 sum -3.050 -0.878 9.906 10.402 Atomic orbital electron populations 1.21739 0.95975 1.01046 1.01819 1.21469 0.95749 0.97015 1.01841 1.21860 0.95157 0.96574 1.02902 1.21842 0.94553 0.83803 1.02029 1.43529 1.52334 1.11473 1.05768 1.19930 1.36508 1.00571 0.89459 0.84234 1.25394 0.95484 0.98113 0.94728 1.69674 1.37959 1.39115 1.00408 0.87012 0.79761 0.83246 0.79950 1.19629 1.20972 1.18552 1.16129 0.84445 0.82530 0.84684 1.90688 1.59342 1.68416 1.30539 1.24498 1.10288 0.96179 0.80870 1.75657 1.08759 0.96286 1.20124 1.75282 1.19112 1.12328 1.05258 1.23592 1.06669 0.88032 0.94776 1.22746 0.94026 0.96774 0.85832 1.68095 1.10710 1.23545 1.14203 1.22288 1.02015 0.87066 1.00864 1.23046 1.00076 1.03638 0.80715 1.43455 1.41633 1.10724 1.07872 0.93120 0.92912 0.92676 0.92027 0.92125 0.91812 0.90882 0.90676 0.90758 0.91042 0.79068 0.80191 0.79725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.84 9.91 37.15 0.37 -1.47 16 2 C -0.12 -1.78 5.93 -26.73 -0.16 -1.94 16 3 C -0.13 -2.27 5.50 -26.73 -0.15 -2.42 16 4 C 0.10 2.08 3.94 -4.04 -0.02 2.07 16 5 N -0.42 -9.87 2.16 -116.33 -0.25 -10.12 16 6 C -0.34 -8.73 8.55 -15.03 -0.13 -8.86 16 7 H 0.14 3.94 5.88 -52.49 -0.31 3.63 16 8 C 0.07 1.89 5.36 -17.45 -0.09 1.80 16 9 N -0.84 -22.69 13.96 55.50 0.77 -21.92 16 10 Si 0.87 19.83 24.79 -169.99 -4.21 15.62 16 11 H -0.27 -5.69 6.69 56.52 0.38 -5.31 16 12 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 13 H -0.26 -6.07 7.10 56.52 0.40 -5.67 16 14 C 0.53 12.55 7.57 -12.89 -0.10 12.45 16 15 O -0.60 -14.05 15.35 5.14 0.08 -13.98 16 16 C 0.14 3.20 7.70 -154.09 -1.19 2.01 16 17 N -0.16 -3.86 8.95 32.33 0.29 -3.58 16 18 N -0.27 -5.66 12.31 31.11 0.38 -5.28 16 19 C 0.12 2.12 7.93 -156.04 -1.24 0.88 16 20 C 0.19 2.58 11.33 -16.90 -0.19 2.39 16 21 N -0.45 -5.93 10.42 -13.13 -0.14 -6.07 16 22 C 0.02 0.21 11.08 -17.93 -0.20 0.01 16 23 C 0.05 0.78 10.66 -16.73 -0.18 0.61 16 24 N -0.36 -6.73 2.96 -60.59 -0.18 -6.91 16 25 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 28 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 31 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 32 H 0.08 1.59 3.37 -51.93 -0.17 1.42 16 33 H 0.07 1.52 7.51 -51.93 -0.39 1.13 16 34 H 0.28 7.00 8.31 -40.82 -0.34 6.66 16 35 H 0.19 1.85 8.06 -52.49 -0.42 1.42 16 36 H 0.18 1.46 8.06 -52.48 -0.42 1.04 16 37 H 0.19 2.62 7.10 -52.49 -0.37 2.24 16 LS Contribution 312.54 15.07 4.71 4.71 Total: -1.00 -30.31 312.54 -6.02 -36.33 By element: Atomic # 1 Polarization: 7.89 SS G_CDS: -4.21 Total: 3.68 kcal Atomic # 6 Polarization: 10.79 SS G_CDS: -3.27 Total: 7.52 kcal Atomic # 7 Polarization: -54.76 SS G_CDS: 0.88 Total: -53.88 kcal Atomic # 8 Polarization: -14.05 SS G_CDS: 0.08 Total: -13.98 kcal Atomic # 14 Polarization: 19.83 SS G_CDS: -4.21 Total: 15.62 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -30.31 -6.02 -36.33 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001152026060.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.690 kcal (2) G-P(sol) polarization free energy of solvation -30.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.329 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds