Wall clock time and date at job start Tue Mar 31 2020 06:58:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86803 * 119.99895 * 2 1 4 4 H 1.48498 * 109.46906 * 269.99678 * 3 2 1 5 5 H 1.48494 * 109.47011 * 30.00368 * 3 2 1 6 6 H 1.48503 * 109.46980 * 150.00254 * 3 2 1 7 7 C 1.37878 * 120.00168 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99828 * 359.97438 * 7 2 1 9 9 C 1.50700 * 120.00275 * 179.97438 * 7 2 1 10 10 C 1.52993 * 109.47102 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47002 * 179.97438 * 10 9 7 12 12 N 1.46509 * 109.46940 * 179.97438 * 11 10 9 13 13 C 1.34776 * 119.99428 * 179.97438 * 12 11 10 14 14 O 1.21552 * 120.00698 * 0.02562 * 13 12 11 15 15 C 1.47858 * 119.99609 * 180.02562 * 13 12 11 16 16 C 1.39471 * 119.99691 * 0.02562 * 15 13 12 17 17 C 1.37966 * 119.82421 * 179.97438 * 16 15 13 18 18 C 1.38124 * 120.12561 * 0.09134 * 17 16 15 19 19 C 1.39236 * 120.52479 * 359.97438 * 18 17 16 20 20 C 1.38151 * 119.77687 * 359.85999 * 19 18 17 21 21 C 1.50753 * 121.47993 * 180.25336 * 20 19 18 22 22 C 1.53076 * 109.68846 * 342.34317 * 21 20 19 23 23 C 1.53410 * 108.27686 * 48.10785 * 22 21 20 24 24 O 1.35872 * 118.44150 * 179.80986 * 19 18 17 25 25 H 0.97000 * 119.99453 * 359.97438 * 1 2 3 26 26 H 1.08996 * 109.46724 * 59.99908 * 9 7 2 27 27 H 1.08996 * 109.46764 * 300.00129 * 9 7 2 28 28 H 1.09005 * 109.47341 * 59.99711 * 10 9 7 29 29 H 1.09002 * 109.47740 * 300.00010 * 10 9 7 30 30 H 1.09000 * 109.46978 * 60.00314 * 11 10 9 31 31 H 1.08995 * 109.47567 * 300.00189 * 11 10 9 32 32 H 0.96991 * 119.99986 * 0.02562 * 12 11 10 33 33 H 1.08004 * 120.08785 * 0.02562 * 16 15 13 34 34 H 1.08003 * 119.93772 * 180.10634 * 17 16 15 35 35 H 1.07994 * 119.73813 * 180.02562 * 18 17 16 36 36 H 1.08994 * 109.43622 * 222.27357 * 21 20 19 37 37 H 1.09000 * 109.42991 * 102.40982 * 21 20 19 38 38 H 1.09005 * 109.69698 * 167.80042 * 22 21 20 39 39 H 1.08997 * 109.70253 * 288.36491 * 22 21 20 40 40 H 1.09003 * 109.68909 * 55.03059 * 23 22 21 41 41 H 1.08992 * 109.68925 * 175.56635 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5468 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5116 -1.1941 -0.0011 10 6 4.0215 -2.6365 -0.0010 11 6 5.5515 -2.6365 -0.0022 12 7 6.0399 -4.0178 -0.0015 13 6 7.3650 -4.2640 -0.0029 14 8 8.1549 -3.3402 -0.0043 15 6 7.8578 -5.6580 -0.0027 16 6 6.9514 -6.7181 -0.0017 17 6 7.4152 -8.0174 -0.0020 18 6 8.7734 -8.2687 -0.0016 19 6 9.6870 -7.2180 -0.0012 20 6 9.2323 -5.9135 -0.0043 21 6 10.1872 -4.7469 -0.0098 22 6 11.5775 -5.2165 0.4261 23 6 11.9286 -6.4817 -0.3672 24 8 11.0132 -7.5136 0.0032 25 1 -0.4849 0.8401 0.0004 26 1 3.8752 -0.6804 0.8888 27 1 3.8745 -0.6800 -0.8911 28 1 3.6578 -3.1506 -0.8907 29 1 3.6586 -3.1502 0.8892 30 1 5.9156 -2.1224 0.8873 31 1 5.9142 -2.1230 -0.8926 32 1 5.4096 -4.7550 -0.0008 33 1 5.8893 -6.5223 -0.0014 34 1 6.7150 -8.8397 -0.0029 35 1 9.1296 -9.2882 -0.0023 36 1 9.8298 -3.9824 0.6800 37 1 10.2440 -4.3295 -1.0151 38 1 12.3105 -4.4370 0.2180 39 1 11.5720 -5.4405 1.4928 40 1 11.8430 -6.2811 -1.4352 41 1 12.9468 -6.7917 -0.1323 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001155610777.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:53 Heat of formation + Delta-G solvation = -64.381196 kcal Electronic energy + Delta-G solvation = -22102.688584 eV Core-core repulsion = 18754.052324 eV Total energy + Delta-G solvation = -3348.636260 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.15205 -39.51802 -37.45350 -35.74340 -34.29051 -33.40349 -31.76510 -30.91157 -30.48995 -27.26111 -25.96744 -24.20068 -23.87405 -22.49066 -20.95795 -20.21083 -20.01392 -18.23826 -17.18659 -16.69669 -16.51903 -16.06351 -15.66654 -15.50679 -15.27588 -14.54776 -14.31511 -14.15739 -13.94886 -13.77500 -13.32847 -13.14294 -12.81719 -12.70309 -12.21672 -12.05781 -11.91526 -11.75950 -11.22681 -11.17512 -11.06108 -10.97269 -10.90221 -10.14962 -9.94142 -9.77299 -9.44326 -9.24816 -9.19820 -8.80941 -8.57207 -8.45567 -6.07967 -4.06823 0.62526 1.09060 2.77115 2.99480 3.23459 3.29944 3.37621 3.41555 3.62719 4.36706 4.42260 4.42819 4.48695 4.61038 4.73765 4.81549 4.88822 5.04272 5.15277 5.26079 5.31382 5.38617 5.44499 5.58039 5.61037 5.61917 5.87275 5.92063 5.93288 5.97914 6.10428 6.20677 6.37206 6.40071 6.41105 6.66254 6.75893 7.12040 7.20098 7.33669 7.56601 7.74456 8.23596 8.48490 8.95777 9.54209 11.05261 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.031997 B = 0.002825 C = 0.002610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 874.866280 B = 9908.761584 C =10725.893681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.067 3.933 3 Si 0.880 3.120 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.264 1.264 7 C -0.523 4.523 8 H 0.072 0.928 9 C -0.011 4.011 10 C -0.114 4.114 11 C 0.114 3.886 12 N -0.719 5.719 13 C 0.552 3.448 14 O -0.536 6.536 15 C -0.102 4.102 16 C -0.116 4.116 17 C -0.097 4.097 18 C -0.126 4.126 19 C 0.119 3.881 20 C -0.099 4.099 21 C -0.085 4.085 22 C -0.164 4.164 23 C 0.059 3.941 24 O -0.316 6.316 25 H 0.263 0.737 26 H 0.019 0.981 27 H 0.014 0.986 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.399 0.601 33 H 0.131 0.869 34 H 0.136 0.864 35 H 0.133 0.867 36 H 0.114 0.886 37 H 0.082 0.918 38 H 0.085 0.915 39 H 0.075 0.925 40 H 0.064 0.936 41 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.203 -16.750 -0.317 27.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.135 4.135 3 Si 0.707 3.293 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.189 1.189 7 C -0.560 4.560 8 H 0.090 0.910 9 C -0.049 4.049 10 C -0.152 4.152 11 C -0.008 4.008 12 N -0.369 5.369 13 C 0.339 3.661 14 O -0.415 6.415 15 C -0.105 4.105 16 C -0.135 4.135 17 C -0.115 4.115 18 C -0.145 4.145 19 C 0.074 3.926 20 C -0.101 4.101 21 C -0.121 4.121 22 C -0.202 4.202 23 C -0.016 4.016 24 O -0.230 6.230 25 H 0.073 0.927 26 H 0.037 0.963 27 H 0.033 0.967 28 H 0.079 0.921 29 H 0.080 0.920 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.235 0.765 33 H 0.148 0.852 34 H 0.154 0.846 35 H 0.151 0.849 36 H 0.132 0.868 37 H 0.100 0.900 38 H 0.104 0.896 39 H 0.094 0.906 40 H 0.083 0.917 41 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 22.679 -16.106 -0.271 27.817 hybrid contribution -0.084 0.737 -0.089 0.747 sum 22.594 -15.369 -0.360 27.328 Atomic orbital electron populations 1.69914 1.06319 1.26970 1.50963 1.25031 0.94751 0.99243 0.94455 0.86773 0.80398 0.83524 0.78588 1.20240 1.21363 1.18899 1.21094 0.89292 0.94521 1.51139 0.90997 1.19497 0.97295 0.91405 0.96675 1.21717 0.90536 1.01142 1.01806 1.21695 0.96232 0.80817 1.02093 1.46117 1.06434 1.10234 1.74151 1.18246 0.82676 0.88305 0.76879 1.90703 1.54692 1.45977 1.50151 1.19736 0.93011 0.93357 1.04392 1.21246 0.99411 0.92282 1.00574 1.20865 0.94599 0.96780 0.99261 1.20777 0.92052 0.98347 1.03310 1.18572 0.83554 0.92135 0.98364 1.19917 0.93977 0.94007 1.02172 1.20832 0.91335 0.95620 1.04304 1.22354 0.98594 0.98080 1.01127 1.23015 0.92241 0.87372 0.98945 1.85991 1.13191 1.39819 1.84007 0.92681 0.96292 0.96724 0.92064 0.92026 0.91582 0.91577 0.76525 0.85161 0.84646 0.84878 0.86848 0.89995 0.89631 0.90598 0.91749 0.87548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.64 13.96 55.43 0.77 -26.87 16 2 C 0.07 1.92 5.47 -17.82 -0.10 1.83 16 3 Si 0.88 21.62 27.47 -169.99 -4.67 16.95 16 4 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 6 H -0.26 -6.25 6.54 56.52 0.37 -5.88 16 7 C -0.52 -14.62 9.66 -34.44 -0.33 -14.95 16 8 H 0.07 2.14 7.99 -52.48 -0.42 1.72 16 9 C -0.01 -0.25 4.04 -27.89 -0.11 -0.36 16 10 C -0.11 -2.09 5.27 -26.73 -0.14 -2.23 16 11 C 0.11 1.86 5.67 -4.04 -0.02 1.83 16 12 N -0.72 -9.90 5.51 -61.24 -0.34 -10.24 16 13 C 0.55 8.07 7.73 -12.32 -0.10 7.97 16 14 O -0.54 -9.19 13.17 5.32 0.07 -9.12 16 15 C -0.10 -1.27 5.88 -104.92 -0.62 -1.88 16 16 C -0.12 -1.16 9.53 -39.22 -0.37 -1.53 16 17 C -0.10 -0.84 10.02 -39.72 -0.40 -1.23 16 18 C -0.13 -1.19 9.93 -39.25 -0.39 -1.58 16 19 C 0.12 1.33 6.47 -39.24 -0.25 1.07 16 20 C -0.10 -1.21 5.78 -104.04 -0.60 -1.81 16 21 C -0.08 -0.97 4.42 -27.82 -0.12 -1.10 16 22 C -0.16 -1.40 6.20 -26.48 -0.16 -1.56 16 23 C 0.06 0.46 7.03 37.37 0.26 0.73 16 24 O -0.32 -3.31 10.27 -19.34 -0.20 -3.51 16 25 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 26 H 0.02 0.44 7.20 -51.93 -0.37 0.07 16 27 H 0.01 0.33 7.57 -51.93 -0.39 -0.06 16 28 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 29 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 30 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 31 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 32 H 0.40 4.48 6.49 -40.82 -0.27 4.21 16 33 H 0.13 1.04 6.39 -52.48 -0.34 0.70 16 34 H 0.14 0.79 8.06 -52.48 -0.42 0.37 16 35 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 36 H 0.11 1.54 5.95 -51.93 -0.31 1.23 16 37 H 0.08 0.97 8.11 -51.93 -0.42 0.55 16 38 H 0.09 0.58 8.14 -51.93 -0.42 0.15 16 39 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.11 0.57 8.14 -51.93 -0.42 0.14 16 LS Contribution 333.48 15.07 5.03 5.03 Total: -1.00 -32.72 333.48 -8.71 -41.43 By element: Atomic # 1 Polarization: 7.04 SS G_CDS: -5.91 Total: 1.13 kcal Atomic # 6 Polarization: -11.35 SS G_CDS: -3.46 Total: -14.81 kcal Atomic # 7 Polarization: -37.54 SS G_CDS: 0.44 Total: -37.10 kcal Atomic # 8 Polarization: -12.50 SS G_CDS: -0.13 Total: -12.63 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -4.67 Total: 16.95 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -32.72 -8.71 -41.43 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155610777.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.949 kcal (2) G-P(sol) polarization free energy of solvation -32.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.432 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds