Wall clock time and date at job start Tue Mar 31 2020 06:58:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86803 * 119.99895 * 2 1 4 4 H 1.48498 * 109.46906 * 269.99678 * 3 2 1 5 5 H 1.48494 * 109.47011 * 30.00368 * 3 2 1 6 6 H 1.48503 * 109.46980 * 150.00254 * 3 2 1 7 7 C 1.37878 * 120.00168 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99828 * 359.97438 * 7 2 1 9 9 C 1.50700 * 120.00275 * 179.97438 * 7 2 1 10 10 C 1.52993 * 109.47102 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47002 * 179.97438 * 10 9 7 12 12 N 1.46509 * 109.46940 * 179.97438 * 11 10 9 13 13 C 1.34776 * 119.99428 * 179.97438 * 12 11 10 14 14 O 1.21552 * 120.00698 * 0.02562 * 13 12 11 15 15 C 1.47858 * 119.99609 * 180.02562 * 13 12 11 16 16 C 1.39471 * 119.99691 * 0.02562 * 15 13 12 17 17 C 1.37966 * 119.82421 * 179.97438 * 16 15 13 18 18 C 1.38124 * 120.12561 * 0.09134 * 17 16 15 19 19 C 1.39236 * 120.52479 * 359.97438 * 18 17 16 20 20 C 1.38151 * 119.77687 * 359.85999 * 19 18 17 21 21 C 1.50753 * 121.47993 * 180.25336 * 20 19 18 22 22 C 1.53076 * 109.68846 * 342.34317 * 21 20 19 23 23 C 1.53410 * 108.27686 * 48.10785 * 22 21 20 24 24 O 1.35872 * 118.44150 * 179.80986 * 19 18 17 25 25 H 0.97000 * 119.99453 * 359.97438 * 1 2 3 26 26 H 1.08996 * 109.46724 * 59.99908 * 9 7 2 27 27 H 1.08996 * 109.46764 * 300.00129 * 9 7 2 28 28 H 1.09005 * 109.47341 * 59.99711 * 10 9 7 29 29 H 1.09002 * 109.47740 * 300.00010 * 10 9 7 30 30 H 1.09000 * 109.46978 * 60.00314 * 11 10 9 31 31 H 1.08995 * 109.47567 * 300.00189 * 11 10 9 32 32 H 0.96991 * 119.99986 * 0.02562 * 12 11 10 33 33 H 1.08004 * 120.08785 * 0.02562 * 16 15 13 34 34 H 1.08003 * 119.93772 * 180.10634 * 17 16 15 35 35 H 1.07994 * 119.73813 * 180.02562 * 18 17 16 36 36 H 1.08994 * 109.43622 * 222.27357 * 21 20 19 37 37 H 1.09000 * 109.42991 * 102.40982 * 21 20 19 38 38 H 1.09005 * 109.69698 * 167.80042 * 22 21 20 39 39 H 1.08997 * 109.70253 * 288.36491 * 22 21 20 40 40 H 1.09003 * 109.68909 * 55.03059 * 23 22 21 41 41 H 1.08992 * 109.68925 * 175.56635 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5468 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5116 -1.1941 -0.0011 10 6 4.0215 -2.6365 -0.0010 11 6 5.5515 -2.6365 -0.0022 12 7 6.0399 -4.0178 -0.0015 13 6 7.3650 -4.2640 -0.0029 14 8 8.1549 -3.3402 -0.0043 15 6 7.8578 -5.6580 -0.0027 16 6 6.9514 -6.7181 -0.0017 17 6 7.4152 -8.0174 -0.0020 18 6 8.7734 -8.2687 -0.0016 19 6 9.6870 -7.2180 -0.0012 20 6 9.2323 -5.9135 -0.0043 21 6 10.1872 -4.7469 -0.0098 22 6 11.5775 -5.2165 0.4261 23 6 11.9286 -6.4817 -0.3672 24 8 11.0132 -7.5136 0.0032 25 1 -0.4849 0.8401 0.0004 26 1 3.8752 -0.6804 0.8888 27 1 3.8745 -0.6800 -0.8911 28 1 3.6578 -3.1506 -0.8907 29 1 3.6586 -3.1502 0.8892 30 1 5.9156 -2.1224 0.8873 31 1 5.9142 -2.1230 -0.8926 32 1 5.4096 -4.7550 -0.0008 33 1 5.8893 -6.5223 -0.0014 34 1 6.7150 -8.8397 -0.0029 35 1 9.1296 -9.2882 -0.0023 36 1 9.8298 -3.9824 0.6800 37 1 10.2440 -4.3295 -1.0151 38 1 12.3105 -4.4370 0.2180 39 1 11.5720 -5.4405 1.4928 40 1 11.8430 -6.2811 -1.4352 41 1 12.9468 -6.7917 -0.1323 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001155610777.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:53 Heat of formation + Delta-G solvation = -85.153429 kcal Electronic energy + Delta-G solvation = -22103.589336 eV Core-core repulsion = 18754.052324 eV Total energy + Delta-G solvation = -3349.537012 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.98502 -40.53927 -38.25912 -37.11867 -35.35388 -34.95553 -33.47050 -31.64938 -31.53004 -28.90582 -26.72738 -25.46717 -24.62674 -23.87720 -22.32204 -21.46341 -20.87450 -19.23158 -18.87758 -17.86112 -17.39568 -16.92080 -16.77545 -16.73429 -16.22329 -16.05754 -15.63258 -15.23010 -14.93861 -14.77870 -14.60642 -14.22534 -14.02200 -13.82899 -13.65816 -13.46076 -12.93593 -12.72811 -12.69904 -12.55543 -12.05343 -11.90615 -11.84778 -11.74190 -11.67470 -11.59429 -11.33473 -10.76416 -10.56220 -10.24528 -9.79855 -9.22989 -8.29596 -6.33458 -0.23250 0.32658 1.36729 1.38418 1.50078 1.79795 2.08677 2.33049 2.36145 2.77033 3.06242 3.57342 3.62878 3.73429 3.88436 3.99943 4.04163 4.16465 4.18936 4.21189 4.39812 4.46660 4.49730 4.62437 4.65775 4.74797 4.87423 4.88071 4.95215 5.02674 5.07790 5.11693 5.19231 5.33986 5.36038 5.45284 5.48839 5.55011 5.64768 5.69742 6.27187 6.38003 6.49578 6.74712 7.14019 7.31420 8.86811 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.031997 B = 0.002825 C = 0.002610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 874.866280 B = 9908.761584 C =10725.893681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C 0.004 3.996 3 Si 0.947 3.053 4 H -0.267 1.267 5 H -0.285 1.285 6 H -0.248 1.248 7 C -0.530 4.530 8 H 0.038 0.962 9 C -0.012 4.012 10 C -0.101 4.101 11 C 0.128 3.872 12 N -0.711 5.711 13 C 0.549 3.451 14 O -0.568 6.568 15 C -0.123 4.123 16 C -0.115 4.115 17 C -0.090 4.090 18 C -0.124 4.124 19 C 0.106 3.894 20 C -0.119 4.119 21 C -0.083 4.083 22 C -0.158 4.158 23 C 0.056 3.944 24 O -0.325 6.325 25 H 0.266 0.734 26 H 0.021 0.979 27 H 0.020 0.980 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.059 0.941 31 H 0.060 0.940 32 H 0.413 0.587 33 H 0.150 0.850 34 H 0.171 0.829 35 H 0.156 0.844 36 H 0.087 0.913 37 H 0.070 0.930 38 H 0.103 0.897 39 H 0.071 0.929 40 H 0.068 0.932 41 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.935 -18.076 -0.398 29.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.192 4.192 3 Si 0.771 3.229 4 H -0.192 1.192 5 H -0.211 1.211 6 H -0.171 1.171 7 C -0.568 4.568 8 H 0.056 0.944 9 C -0.050 4.050 10 C -0.139 4.139 11 C 0.004 3.996 12 N -0.363 5.363 13 C 0.338 3.662 14 O -0.449 6.449 15 C -0.126 4.126 16 C -0.134 4.134 17 C -0.107 4.107 18 C -0.142 4.142 19 C 0.061 3.939 20 C -0.121 4.121 21 C -0.120 4.120 22 C -0.196 4.196 23 C -0.018 4.018 24 O -0.239 6.239 25 H 0.075 0.925 26 H 0.039 0.961 27 H 0.038 0.962 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.078 0.922 31 H 0.079 0.921 32 H 0.250 0.750 33 H 0.167 0.833 34 H 0.188 0.812 35 H 0.173 0.827 36 H 0.106 0.894 37 H 0.088 0.912 38 H 0.121 0.879 39 H 0.090 0.910 40 H 0.086 0.914 41 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 24.416 -17.467 -0.352 30.023 hybrid contribution -0.659 1.028 -0.068 1.223 sum 23.757 -16.439 -0.421 28.893 Atomic orbital electron populations 1.70060 1.08219 1.28126 1.52711 1.25984 0.95588 1.03431 0.94238 0.85700 0.79522 0.78525 0.79175 1.19248 1.21073 1.17118 1.21466 0.91889 0.93276 1.50215 0.94359 1.19460 0.94085 0.94609 0.96832 1.21491 0.91877 0.98237 1.02278 1.21346 0.94484 0.82188 1.01587 1.45925 1.06664 1.09647 1.74046 1.18643 0.82389 0.89149 0.76010 1.90692 1.55449 1.47209 1.51589 1.19669 0.93715 0.92529 1.06732 1.21530 1.00015 0.92297 0.99570 1.21270 0.94910 0.97084 0.97456 1.21175 0.92266 0.99004 1.01790 1.18788 0.84282 0.92085 0.98723 1.20059 0.94091 0.94734 1.03173 1.20709 0.93181 0.95146 1.02943 1.22321 0.97190 0.99119 1.00925 1.23242 0.93055 0.86512 0.99022 1.85978 1.13088 1.40724 1.84116 0.92511 0.96078 0.96173 0.91603 0.91625 0.92216 0.92117 0.74956 0.83286 0.81203 0.82673 0.89450 0.91178 0.87875 0.90989 0.91386 0.84650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.28 13.96 21.45 0.30 -58.98 16 2 C 0.00 0.26 5.47 84.65 0.46 0.72 16 3 Si 0.95 44.26 27.47 68.60 1.88 46.14 16 4 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 5 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 6 H -0.25 -10.81 6.54 99.48 0.65 -10.16 16 7 C -0.53 -29.97 9.66 25.60 0.25 -29.72 16 8 H 0.04 2.35 7.99 -2.91 -0.02 2.32 16 9 C -0.01 -0.54 4.04 29.85 0.12 -0.42 16 10 C -0.10 -3.60 5.27 30.59 0.16 -3.44 16 11 C 0.13 4.03 5.67 86.38 0.49 4.52 16 12 N -0.71 -18.94 5.51 -465.95 -2.57 -21.50 16 13 C 0.55 16.03 7.73 86.79 0.67 16.70 16 14 O -0.57 -19.98 13.17 -3.88 -0.05 -20.03 16 15 C -0.12 -3.00 5.88 -20.05 -0.12 -3.11 16 16 C -0.12 -2.05 9.53 22.50 0.21 -1.84 16 17 C -0.09 -1.26 10.02 22.18 0.22 -1.04 16 18 C -0.12 -2.01 9.93 22.48 0.22 -1.79 16 19 C 0.11 2.23 6.47 22.49 0.15 2.38 16 20 C -0.12 -2.86 5.78 -19.49 -0.11 -2.98 16 21 C -0.08 -1.97 4.42 29.89 0.13 -1.84 16 22 C -0.16 -2.59 6.20 30.76 0.19 -2.40 16 23 C 0.06 0.79 7.03 72.12 0.51 1.29 16 24 O -0.32 -6.26 10.27 -92.11 -0.95 -7.20 16 25 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 26 H 0.02 0.95 7.20 -2.39 -0.02 0.93 16 27 H 0.02 0.89 7.57 -2.39 -0.02 0.87 16 28 H 0.07 2.28 8.14 -2.38 -0.02 2.26 16 29 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 30 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 31 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 32 H 0.41 8.59 6.49 -92.72 -0.60 7.98 16 33 H 0.15 1.97 6.39 -2.91 -0.02 1.95 16 34 H 0.17 1.20 8.06 -2.91 -0.02 1.18 16 35 H 0.16 1.79 8.06 -2.91 -0.02 1.77 16 36 H 0.09 2.51 5.95 -2.39 -0.01 2.50 16 37 H 0.07 1.75 8.11 -2.39 -0.02 1.73 16 38 H 0.10 1.28 8.14 -2.38 -0.02 1.26 16 39 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 40 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 41 H 0.14 1.09 8.14 -2.39 -0.02 1.07 16 Total: -1.00 -72.13 333.48 2.56 -69.57 By element: Atomic # 1 Polarization: 14.60 SS G_CDS: 0.38 Total: 14.98 kcal Atomic # 6 Polarization: -26.53 SS G_CDS: 3.56 Total: -22.97 kcal Atomic # 7 Polarization: -78.22 SS G_CDS: -2.27 Total: -80.49 kcal Atomic # 8 Polarization: -26.24 SS G_CDS: -1.00 Total: -27.23 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 1.88 Total: 46.14 kcal Total: -72.13 2.56 -69.57 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155610777.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.584 kcal (2) G-P(sol) polarization free energy of solvation -72.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds