Wall clock time and date at job start Tue Mar 31 2020 05:52:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.46539 * 2 1 4 4 H 1.08993 * 109.47070 * 304.99745 * 3 2 1 5 5 C 1.50704 * 109.46879 * 184.99823 * 3 2 1 6 6 H 1.07997 * 120.00048 * 240.00349 * 5 3 2 7 7 C 1.37880 * 119.99851 * 60.00393 * 5 3 2 8 8 N 1.31513 * 119.99995 * 359.97438 * 7 5 3 9 9 Si 1.86801 * 119.99743 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47135 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47021 * 119.99840 * 9 7 5 12 12 H 1.48499 * 109.46702 * 239.99738 * 9 7 5 13 13 N 1.46495 * 109.46936 * 65.00109 * 3 2 1 14 14 C 1.34779 * 120.00187 * 274.99286 * 13 3 2 15 15 O 1.21690 * 119.99740 * 0.02562 * 14 13 3 16 16 C 1.46771 * 120.00072 * 179.97438 * 14 13 3 17 17 N 1.32405 * 126.40248 * 0.02562 * 16 14 13 18 18 N 1.28736 * 109.96700 * 179.97438 * 17 16 14 19 19 C 1.32782 * 109.67083 * 359.97438 * 18 17 16 20 20 C 1.40586 * 134.01469 * 179.97438 * 19 18 17 21 21 C 1.50700 * 120.18474 * 0.02562 * 20 19 18 22 22 N 1.31284 * 119.63704 * 180.02562 * 20 19 18 23 23 C 1.33231 * 121.28077 * 359.97438 * 22 20 19 24 24 C 1.35474 * 121.15436 * 359.97438 * 23 22 20 25 25 N 1.35878 * 119.70320 * 0.02562 * 24 23 22 26 26 H 1.09000 * 109.47622 * 60.00467 * 1 2 3 27 27 H 1.09008 * 109.46625 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47655 * 299.99637 * 1 2 3 29 29 H 1.08995 * 109.47176 * 240.00580 * 2 1 3 30 30 H 1.08992 * 109.47312 * 119.99629 * 2 1 3 31 31 H 0.97002 * 120.00103 * 180.02562 * 8 7 5 32 32 H 0.97002 * 120.00244 * 95.00013 * 13 3 2 33 33 H 1.09005 * 109.47061 * 270.02248 * 21 20 19 34 34 H 1.09003 * 109.46747 * 30.01600 * 21 20 19 35 35 H 1.08990 * 109.47633 * 150.02094 * 21 20 19 36 36 H 1.07996 * 119.41989 * 179.97438 * 23 22 20 37 37 H 1.07997 * 120.14429 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6052 1.9815 -0.8418 5 6 3.5418 1.4445 -0.1238 6 1 4.1470 1.8890 0.6523 7 6 4.1432 0.8787 -1.2280 8 7 3.4062 0.3369 -2.1729 9 14 6.0049 0.8804 -1.3811 10 1 6.5986 1.5456 -0.1935 11 1 6.4962 -0.5186 -1.4626 12 1 6.3999 1.6161 -2.6090 13 7 1.6522 2.0975 1.2518 14 6 0.4349 2.6644 1.3670 15 8 -0.3424 2.6318 0.4312 16 6 0.0464 3.3200 2.6213 17 7 0.7871 3.4286 3.7134 18 7 0.1362 4.0635 4.6247 19 6 -1.0635 4.3992 4.1653 20 6 -2.1627 5.0840 4.7126 21 6 -2.1022 5.6085 6.1241 22 7 -3.2421 5.2640 3.9873 23 6 -3.3191 4.8100 2.7371 24 6 -2.2848 4.1457 2.1677 25 7 -1.1465 3.9351 2.8792 26 1 -0.3634 0.5137 -0.8900 27 1 -0.3633 -1.0278 -0.0005 28 1 -0.3634 0.5137 0.8899 29 1 1.8933 -0.5137 -0.8900 30 1 1.8933 -0.5137 0.8899 31 1 3.8293 -0.0615 -2.9495 32 1 2.2717 2.1232 1.9978 33 1 -2.4685 4.8456 6.8112 34 1 -1.0713 5.8585 6.3749 35 1 -2.7229 6.5005 6.2072 36 1 -4.2218 4.9746 2.1677 37 1 -2.3647 3.7852 1.1528 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001156421254.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:58 Heat of formation + Delta-G solvation = 78.976849 kcal Electronic energy + Delta-G solvation = -22692.395339 eV Core-core repulsion = 19278.727958 eV Total energy + Delta-G solvation = -3413.667381 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.128 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -43.91995 -39.60381 -39.03456 -35.68633 -35.02062 -32.85996 -32.42277 -31.37679 -30.24878 -28.55862 -27.20367 -24.83454 -24.30816 -23.52354 -22.81119 -20.73572 -19.61256 -18.90025 -18.16844 -17.59214 -17.12841 -16.01969 -15.56675 -15.38522 -15.06331 -14.80299 -14.51859 -14.05740 -13.55845 -13.27225 -13.04849 -12.79171 -12.64841 -12.28541 -12.13120 -11.83148 -11.66661 -11.35822 -11.12333 -11.00119 -10.92361 -10.49669 -10.40501 -10.31578 -10.03970 -9.80865 -9.61100 -9.17009 -8.61806 -8.55457 -8.06564 -6.20754 -4.30297 0.07003 0.51221 1.76539 2.03635 3.02627 3.21200 3.29425 3.32758 3.48033 3.50524 3.61442 3.75281 3.93944 4.28691 4.37655 4.73659 4.77549 5.04554 5.11552 5.21288 5.26394 5.44025 5.51144 5.64941 5.89321 6.26138 6.28715 6.31168 6.50084 6.90455 7.01274 7.08874 7.22189 7.23474 7.45321 7.60680 7.74507 8.03681 8.04722 8.38708 8.56447 8.81620 9.36751 10.84788 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.029613 B = 0.003913 C = 0.003621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.316769 B = 7154.631320 C = 7730.602775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.129 4.129 3 C 0.270 3.730 4 H 0.055 0.945 5 C -0.536 4.536 6 H 0.066 0.934 7 C 0.068 3.932 8 N -0.882 5.882 9 Si 0.904 3.096 10 H -0.271 1.271 11 H -0.282 1.282 12 H -0.282 1.282 13 N -0.669 5.669 14 C 0.590 3.410 15 O -0.541 6.541 16 C 0.118 3.882 17 N -0.200 5.200 18 N -0.253 5.253 19 C 0.135 3.865 20 C 0.218 3.782 21 C -0.097 4.097 22 N -0.451 5.451 23 C 0.043 3.957 24 C 0.035 3.965 25 N -0.341 5.341 26 H 0.051 0.949 27 H 0.026 0.974 28 H 0.033 0.967 29 H 0.104 0.896 30 H 0.036 0.964 31 H 0.265 0.735 32 H 0.402 0.598 33 H 0.092 0.908 34 H 0.091 0.909 35 H 0.090 0.910 36 H 0.189 0.811 37 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.786 7.588 11.078 17.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.168 4.168 3 C 0.170 3.830 4 H 0.073 0.927 5 C -0.575 4.575 6 H 0.084 0.916 7 C -0.135 4.135 8 N -0.519 5.519 9 Si 0.731 3.269 10 H -0.195 1.195 11 H -0.208 1.208 12 H -0.208 1.208 13 N -0.316 5.316 14 C 0.371 3.629 15 O -0.419 6.419 16 C -0.145 4.145 17 N -0.048 5.048 18 N -0.106 5.106 19 C -0.114 4.114 20 C 0.054 3.946 21 C -0.155 4.155 22 N -0.165 5.165 23 C -0.097 4.097 24 C -0.091 4.091 25 N -0.021 5.021 26 H 0.070 0.930 27 H 0.045 0.955 28 H 0.052 0.948 29 H 0.122 0.878 30 H 0.054 0.946 31 H 0.075 0.925 32 H 0.237 0.763 33 H 0.110 0.890 34 H 0.110 0.890 35 H 0.109 0.891 36 H 0.206 0.794 37 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -11.787 7.621 11.189 17.950 hybrid contribution 0.843 -0.421 -1.126 1.468 sum -10.943 7.200 10.063 16.518 Atomic orbital electron populations 1.21850 0.98427 0.98387 1.00902 1.21971 0.92549 0.99417 1.02872 1.19027 0.94873 0.89321 0.79827 0.92742 1.21245 0.90217 1.39393 1.06612 0.91593 1.24871 0.98888 0.94558 0.95210 1.69890 1.35223 1.37458 1.09371 0.86348 0.84456 0.77870 0.78231 1.19548 1.20772 1.20843 1.46385 1.12869 1.52881 1.19438 1.16142 0.84315 0.79712 0.82779 1.90820 1.51703 1.61103 1.38266 1.24941 0.83292 1.06001 1.00281 1.74913 1.22907 1.10722 0.96274 1.75110 1.00224 1.13776 1.21506 1.23340 0.99116 1.04647 0.84323 1.21312 0.84341 0.91298 0.97650 1.20750 1.04835 1.02175 0.87745 1.68035 1.23629 1.18522 1.06315 1.22440 0.98658 0.96904 0.91708 1.23131 0.84199 1.01053 1.00759 1.43291 1.12181 1.34137 1.12441 0.92982 0.95469 0.94780 0.87756 0.94556 0.92480 0.76317 0.88955 0.89026 0.89148 0.79447 0.79027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.94 8.51 37.16 0.32 -2.62 16 2 C -0.13 -3.03 5.45 -26.73 -0.15 -3.17 16 3 C 0.27 6.56 2.24 -69.08 -0.15 6.41 16 4 H 0.05 1.50 7.58 -51.93 -0.39 1.10 16 5 C -0.54 -13.83 8.73 -34.44 -0.30 -14.13 16 6 H 0.07 1.66 7.74 -52.49 -0.41 1.25 16 7 C 0.07 1.78 5.29 -17.82 -0.09 1.69 16 8 N -0.88 -23.88 11.29 55.43 0.63 -23.25 16 9 Si 0.90 20.26 29.54 -169.99 -5.02 15.24 16 10 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 11 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 12 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 13 N -0.67 -14.03 5.02 -56.21 -0.28 -14.31 16 14 C 0.59 11.81 6.36 -12.81 -0.08 11.73 16 15 O -0.54 -11.54 12.82 5.20 0.07 -11.47 16 16 C 0.12 2.11 7.96 -154.13 -1.23 0.88 16 17 N -0.20 -3.57 11.94 32.35 0.39 -3.19 16 18 N -0.25 -4.12 12.32 31.10 0.38 -3.73 16 19 C 0.14 1.96 7.62 -156.08 -1.19 0.77 16 20 C 0.22 2.47 6.86 -81.94 -0.56 1.91 16 21 C -0.10 -0.73 10.21 36.01 0.37 -0.37 16 22 N -0.45 -4.93 10.35 -9.37 -0.10 -5.03 16 23 C 0.04 0.42 11.08 -17.93 -0.20 0.22 16 24 C 0.03 0.43 10.65 -16.75 -0.18 0.25 16 25 N -0.34 -5.28 2.96 -60.58 -0.18 -5.46 16 26 H 0.05 1.15 7.84 -51.93 -0.41 0.74 16 27 H 0.03 0.51 8.14 -51.92 -0.42 0.09 16 28 H 0.03 0.70 5.64 -51.93 -0.29 0.41 16 29 H 0.10 2.69 5.95 -51.93 -0.31 2.38 16 30 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16 32 H 0.40 7.89 8.24 -40.82 -0.34 7.55 16 33 H 0.09 0.58 8.14 -51.93 -0.42 0.15 16 34 H 0.09 0.68 8.10 -51.93 -0.42 0.26 16 35 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.19 1.12 8.06 -52.49 -0.42 0.69 16 37 H 0.19 2.26 7.08 -52.49 -0.37 1.89 16 LS Contribution 315.61 15.07 4.76 4.76 Total: -1.00 -29.80 315.61 -7.00 -36.80 By element: Atomic # 1 Polarization: 10.27 SS G_CDS: -4.19 Total: 6.09 kcal Atomic # 6 Polarization: 7.01 SS G_CDS: -3.45 Total: 3.56 kcal Atomic # 7 Polarization: -55.81 SS G_CDS: 0.84 Total: -54.97 kcal Atomic # 8 Polarization: -11.54 SS G_CDS: 0.07 Total: -11.47 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -5.02 Total: 15.24 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -29.80 -7.00 -36.80 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001156421254.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.772 kcal (2) G-P(sol) polarization free energy of solvation -29.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.795 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds