Wall clock time and date at job start Tue Mar 31 2020 05:52:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.46539 * 2 1 4 4 H 1.08993 * 109.47070 * 304.99745 * 3 2 1 5 5 C 1.50704 * 109.46879 * 184.99823 * 3 2 1 6 6 H 1.07997 * 120.00048 * 240.00349 * 5 3 2 7 7 C 1.37880 * 119.99851 * 60.00393 * 5 3 2 8 8 N 1.31513 * 119.99995 * 359.97438 * 7 5 3 9 9 Si 1.86801 * 119.99743 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47135 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47021 * 119.99840 * 9 7 5 12 12 H 1.48499 * 109.46702 * 239.99738 * 9 7 5 13 13 N 1.46495 * 109.46936 * 65.00109 * 3 2 1 14 14 C 1.34779 * 120.00187 * 274.99286 * 13 3 2 15 15 O 1.21690 * 119.99740 * 0.02562 * 14 13 3 16 16 C 1.46771 * 120.00072 * 179.97438 * 14 13 3 17 17 N 1.32405 * 126.40248 * 0.02562 * 16 14 13 18 18 N 1.28736 * 109.96700 * 179.97438 * 17 16 14 19 19 C 1.32782 * 109.67083 * 359.97438 * 18 17 16 20 20 C 1.40586 * 134.01469 * 179.97438 * 19 18 17 21 21 C 1.50700 * 120.18474 * 0.02562 * 20 19 18 22 22 N 1.31284 * 119.63704 * 180.02562 * 20 19 18 23 23 C 1.33231 * 121.28077 * 359.97438 * 22 20 19 24 24 C 1.35474 * 121.15436 * 359.97438 * 23 22 20 25 25 N 1.35878 * 119.70320 * 0.02562 * 24 23 22 26 26 H 1.09000 * 109.47622 * 60.00467 * 1 2 3 27 27 H 1.09008 * 109.46625 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47655 * 299.99637 * 1 2 3 29 29 H 1.08995 * 109.47176 * 240.00580 * 2 1 3 30 30 H 1.08992 * 109.47312 * 119.99629 * 2 1 3 31 31 H 0.97002 * 120.00103 * 180.02562 * 8 7 5 32 32 H 0.97002 * 120.00244 * 95.00013 * 13 3 2 33 33 H 1.09005 * 109.47061 * 270.02248 * 21 20 19 34 34 H 1.09003 * 109.46747 * 30.01600 * 21 20 19 35 35 H 1.08990 * 109.47633 * 150.02094 * 21 20 19 36 36 H 1.07996 * 119.41989 * 179.97438 * 23 22 20 37 37 H 1.07997 * 120.14429 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6052 1.9815 -0.8418 5 6 3.5418 1.4445 -0.1238 6 1 4.1470 1.8890 0.6523 7 6 4.1432 0.8787 -1.2280 8 7 3.4062 0.3369 -2.1729 9 14 6.0049 0.8804 -1.3811 10 1 6.5986 1.5456 -0.1935 11 1 6.4962 -0.5186 -1.4626 12 1 6.3999 1.6161 -2.6090 13 7 1.6522 2.0975 1.2518 14 6 0.4349 2.6644 1.3670 15 8 -0.3424 2.6318 0.4312 16 6 0.0464 3.3200 2.6213 17 7 0.7871 3.4286 3.7134 18 7 0.1362 4.0635 4.6247 19 6 -1.0635 4.3992 4.1653 20 6 -2.1627 5.0840 4.7126 21 6 -2.1022 5.6085 6.1241 22 7 -3.2421 5.2640 3.9873 23 6 -3.3191 4.8100 2.7371 24 6 -2.2848 4.1457 2.1677 25 7 -1.1465 3.9351 2.8792 26 1 -0.3634 0.5137 -0.8900 27 1 -0.3633 -1.0278 -0.0005 28 1 -0.3634 0.5137 0.8899 29 1 1.8933 -0.5137 -0.8900 30 1 1.8933 -0.5137 0.8899 31 1 3.8293 -0.0615 -2.9495 32 1 2.2717 2.1232 1.9978 33 1 -2.4685 4.8456 6.8112 34 1 -1.0713 5.8585 6.3749 35 1 -2.7229 6.5005 6.2072 36 1 -4.2218 4.9746 2.1677 37 1 -2.3647 3.7852 1.1528 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001156421254.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:58 Heat of formation + Delta-G solvation = 59.909907 kcal Electronic energy + Delta-G solvation = -22693.222144 eV Core-core repulsion = 19278.727958 eV Total energy + Delta-G solvation = -3414.494186 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.128 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -45.08466 -40.91748 -40.38167 -37.24446 -36.32360 -34.51855 -33.63714 -33.04338 -31.58682 -29.38620 -29.05263 -26.20480 -25.38613 -24.97846 -24.30908 -22.22780 -21.37625 -20.14243 -19.30712 -19.02520 -18.32157 -17.75970 -17.31877 -16.41931 -16.37004 -16.27517 -15.96213 -15.25900 -14.98293 -14.64637 -14.19955 -14.00932 -13.98823 -13.57066 -13.38841 -13.22513 -13.13829 -12.94502 -12.73367 -12.71187 -12.31245 -12.22668 -12.12121 -11.67904 -11.50724 -11.21376 -11.18178 -11.10789 -10.58345 -9.93244 -9.51838 -8.19976 -6.36651 -0.89497 -0.65431 0.60879 0.77423 1.43874 1.46113 1.57601 1.93590 2.10533 2.11578 2.41952 2.58269 2.81986 2.91870 3.10023 3.11839 3.50846 3.87683 4.10081 4.26261 4.40587 4.45161 4.50764 4.67076 4.72753 4.74938 4.85621 4.99478 5.16022 5.18843 5.30528 5.32597 5.35813 5.55201 5.69515 5.79057 6.08965 6.30487 6.56474 6.66516 6.88019 7.06303 7.35238 8.85636 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.029613 B = 0.003913 C = 0.003621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.316769 B = 7154.631320 C = 7730.602775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.123 4.123 3 C 0.280 3.720 4 H 0.015 0.985 5 C -0.553 4.553 6 H 0.069 0.931 7 C 0.023 3.977 8 N -0.910 5.910 9 Si 0.969 3.031 10 H -0.265 1.265 11 H -0.277 1.277 12 H -0.282 1.282 13 N -0.673 5.673 14 C 0.596 3.404 15 O -0.560 6.560 16 C 0.087 3.913 17 N -0.210 5.210 18 N -0.267 5.267 19 C 0.134 3.866 20 C 0.222 3.778 21 C -0.097 4.097 22 N -0.449 5.449 23 C 0.076 3.924 24 C 0.002 3.998 25 N -0.339 5.339 26 H 0.036 0.964 27 H 0.048 0.952 28 H 0.035 0.965 29 H 0.081 0.919 30 H 0.040 0.960 31 H 0.267 0.733 32 H 0.408 0.592 33 H 0.110 0.890 34 H 0.092 0.908 35 H 0.112 0.888 36 H 0.233 0.767 37 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.101 8.612 12.659 20.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.162 4.162 3 C 0.178 3.822 4 H 0.033 0.967 5 C -0.591 4.591 6 H 0.087 0.913 7 C -0.178 4.178 8 N -0.548 5.548 9 Si 0.794 3.206 10 H -0.189 1.189 11 H -0.202 1.202 12 H -0.208 1.208 13 N -0.320 5.320 14 C 0.378 3.622 15 O -0.438 6.438 16 C -0.175 4.175 17 N -0.060 5.060 18 N -0.122 5.122 19 C -0.115 4.115 20 C 0.059 3.941 21 C -0.154 4.154 22 N -0.163 5.163 23 C -0.064 4.064 24 C -0.124 4.124 25 N -0.017 5.017 26 H 0.055 0.945 27 H 0.068 0.932 28 H 0.054 0.946 29 H 0.099 0.901 30 H 0.059 0.941 31 H 0.076 0.924 32 H 0.244 0.756 33 H 0.128 0.872 34 H 0.111 0.889 35 H 0.131 0.869 36 H 0.249 0.751 37 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -13.122 8.661 12.797 20.273 hybrid contribution 1.039 -0.612 -1.547 1.961 sum -12.084 8.050 11.251 18.368 Atomic orbital electron populations 1.21688 0.96747 0.99562 1.00184 1.21824 0.93987 0.98611 1.01784 1.18633 0.94150 0.89458 0.79966 0.96731 1.21547 0.91114 1.39491 1.06936 0.91309 1.25671 1.03186 0.94131 0.94846 1.70013 1.36952 1.38000 1.09814 0.85341 0.79197 0.77941 0.78157 1.18896 1.20242 1.20765 1.46120 1.13726 1.53571 1.18604 1.16223 0.83540 0.79009 0.83383 1.90793 1.52080 1.61672 1.39290 1.24192 0.84982 1.08670 0.99633 1.74826 1.23588 1.11058 0.96520 1.75026 1.01169 1.14527 1.21446 1.23889 0.99369 1.04317 0.83938 1.22035 0.83107 0.89883 0.99049 1.20938 1.05578 1.03394 0.85486 1.68231 1.23039 1.18361 1.06621 1.23209 0.98745 0.93293 0.91184 1.23481 0.84189 1.03378 1.01370 1.43374 1.12109 1.33275 1.12987 0.94500 0.93249 0.94589 0.90118 0.94130 0.92356 0.75612 0.87150 0.88926 0.86949 0.75055 0.79012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.35 8.51 71.98 0.61 -4.74 16 2 C -0.12 -5.92 5.45 30.60 0.17 -5.75 16 3 C 0.28 14.11 2.24 44.25 0.10 14.21 16 4 H 0.01 0.86 7.58 -2.39 -0.02 0.84 16 5 C -0.55 -29.14 8.73 25.60 0.22 -28.92 16 6 H 0.07 3.50 7.74 -2.91 -0.02 3.48 16 7 C 0.02 1.19 5.29 84.66 0.45 1.64 16 8 N -0.91 -50.40 11.29 21.45 0.24 -50.16 16 9 Si 0.97 41.81 29.54 68.60 2.03 43.84 16 10 H -0.26 -11.07 7.11 99.48 0.71 -10.36 16 11 H -0.28 -11.66 7.11 99.48 0.71 -10.96 16 12 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 13 N -0.67 -29.19 5.02 -449.98 -2.26 -31.45 16 14 C 0.60 24.60 6.36 86.47 0.55 25.15 16 15 O -0.56 -24.65 12.82 -4.32 -0.06 -24.71 16 16 C 0.09 3.17 7.96 135.86 1.08 4.25 16 17 N -0.21 -7.59 11.94 -51.56 -0.62 -8.21 16 18 N -0.27 -8.59 12.32 -55.51 -0.68 -9.28 16 19 C 0.13 3.72 7.62 133.98 1.02 4.74 16 20 C 0.22 4.43 6.86 43.21 0.30 4.73 16 21 C -0.10 -1.14 10.21 71.24 0.73 -0.42 16 22 N -0.45 -8.21 10.35 -183.56 -1.90 -10.11 16 23 C 0.08 1.24 11.08 83.84 0.93 2.17 16 24 C 0.00 0.04 10.65 83.43 0.89 0.93 16 25 N -0.34 -10.31 2.96 -345.58 -1.02 -11.33 16 26 H 0.04 1.66 7.84 -2.39 -0.02 1.64 16 27 H 0.05 1.86 8.14 -2.38 -0.02 1.84 16 28 H 0.04 1.51 5.64 -2.39 -0.01 1.49 16 29 H 0.08 4.29 5.95 -2.39 -0.01 4.28 16 30 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 31 H 0.27 13.97 8.31 -92.71 -0.77 13.20 16 32 H 0.41 16.55 8.24 -92.71 -0.76 15.79 16 33 H 0.11 0.98 8.14 -2.38 -0.02 0.96 16 34 H 0.09 1.13 8.10 -2.39 -0.02 1.11 16 35 H 0.11 0.88 8.14 -2.39 -0.02 0.86 16 36 H 0.23 1.64 8.06 -2.91 -0.02 1.61 16 37 H 0.19 4.44 7.08 -2.91 -0.02 4.42 16 Total: -1.00 -65.84 315.61 3.14 -62.70 By element: Atomic # 1 Polarization: 20.35 SS G_CDS: 0.36 Total: 20.71 kcal Atomic # 6 Polarization: 10.95 SS G_CDS: 7.04 Total: 18.00 kcal Atomic # 7 Polarization: -114.29 SS G_CDS: -6.24 Total: -120.53 kcal Atomic # 8 Polarization: -24.65 SS G_CDS: -0.06 Total: -24.71 kcal Atomic # 14 Polarization: 41.81 SS G_CDS: 2.03 Total: 43.84 kcal Total: -65.84 3.14 -62.70 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001156421254.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.610 kcal (2) G-P(sol) polarization free energy of solvation -65.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.700 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds