Wall clock time and date at job start Tue Mar 31 2020 06:55:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00588 * 2 1 4 4 H 1.48501 * 109.47364 * 179.72223 * 3 2 1 5 5 H 1.48508 * 109.46883 * 299.72346 * 3 2 1 6 6 H 1.48497 * 109.46870 * 59.72156 * 3 2 1 7 7 C 1.37884 * 119.99573 * 179.72306 * 2 1 3 8 8 H 1.07999 * 120.00052 * 180.28126 * 7 2 1 9 9 C 1.50696 * 119.99746 * 0.27650 * 7 2 1 10 10 C 1.53002 * 109.46919 * 180.02562 * 9 7 2 11 11 C 1.53006 * 109.47348 * 179.97438 * 10 9 7 12 12 C 1.50699 * 109.47240 * 179.97438 * 11 10 9 13 13 O 1.21282 * 120.00041 * 0.02562 * 12 11 10 14 14 N 1.34779 * 120.00033 * 180.02562 * 12 11 10 15 15 C 1.46497 * 119.99798 * 179.97438 * 14 12 11 16 16 H 1.08998 * 110.73163 * 36.95625 * 15 14 12 17 17 C 1.54338 * 110.82215 * 273.54070 * 15 14 12 18 18 C 1.51367 * 105.17370 * 268.12316 * 17 15 14 19 19 C 1.38503 * 130.39370 * 162.85267 * 18 17 15 20 20 C 1.38104 * 120.21634 * 180.02562 * 19 18 17 21 21 C 1.38260 * 119.93459 * 359.91343 * 20 19 18 22 22 C 1.38104 * 119.93069 * 0.03244 * 21 20 19 23 23 C 1.38215 * 109.76017 * 342.81795 * 18 17 15 24 24 C 1.51371 * 109.75507 * 359.97438 * 23 18 17 25 25 H 1.09008 * 110.29589 * 136.11691 * 24 23 18 26 26 O 1.42898 * 110.30529 * 258.26791 * 24 23 18 27 27 H 0.97001 * 120.00651 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47319 * 299.99477 * 9 7 2 29 29 H 1.08999 * 109.47742 * 60.00602 * 9 7 2 30 30 H 1.09004 * 109.46930 * 299.99899 * 10 9 7 31 31 H 1.09000 * 109.47312 * 59.99955 * 10 9 7 32 32 H 1.09001 * 109.46611 * 299.99902 * 11 10 9 33 33 H 1.09000 * 109.46866 * 59.99785 * 11 10 9 34 34 H 0.97004 * 119.99472 * 359.97438 * 14 12 11 35 35 H 1.08998 * 110.30660 * 27.04875 * 17 15 14 36 36 H 1.08998 * 110.30227 * 149.09877 * 17 15 14 37 37 H 1.08003 * 119.89161 * 359.94077 * 19 18 17 38 38 H 1.07997 * 120.03703 * 179.97438 * 20 19 18 39 39 H 1.07999 * 120.02961 * 180.02562 * 21 20 19 40 40 H 1.08005 * 119.88673 * 179.97438 * 22 21 20 41 41 H 0.96700 * 114.00239 * 295.74709 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.7093 1.3462 0.0068 5 1 1.8957 2.3934 -1.2159 6 1 1.8855 2.3993 1.2091 7 6 2.0045 -1.1941 0.0058 8 1 3.0845 -1.1942 0.0104 9 6 1.2508 -2.4991 0.0058 10 6 2.2450 -3.6621 0.0134 11 6 1.4799 -4.9872 0.0141 12 6 2.4591 -6.1327 0.0209 13 8 3.6515 -5.9111 0.0254 14 7 2.0098 -7.4033 0.0221 15 6 2.9618 -8.5168 0.0282 16 1 3.8293 -8.2794 0.6438 17 6 3.3914 -8.8792 -1.4092 18 6 2.4225 -9.9541 -1.8532 19 6 2.1228 -10.4241 -3.1211 20 6 1.1888 -11.4277 -3.2875 21 6 0.5516 -11.9669 -2.1852 22 6 0.8500 -11.5002 -0.9201 23 6 1.7852 -10.4928 -0.7514 24 6 2.2826 -9.8171 0.5085 25 1 1.4466 -9.5853 1.1686 26 8 3.2282 -10.6527 1.1790 27 1 -0.4851 -0.8400 -0.0004 28 1 0.6205 -2.5547 0.8933 29 1 0.6280 -2.5591 -0.8867 30 1 2.8757 -3.6068 -0.8739 31 1 2.8676 -3.6021 0.9061 32 1 0.8495 -5.0422 0.9016 33 1 0.8570 -5.0475 -0.8784 34 1 1.0561 -7.5805 0.0189 35 1 3.3127 -8.0074 -2.0587 36 1 4.4118 -9.2624 -1.4137 37 1 2.6201 -10.0035 -3.9826 38 1 0.9570 -11.7918 -4.2774 39 1 -0.1788 -12.7520 -2.3135 40 1 0.3515 -11.9216 -0.0596 41 1 2.8574 -11.4848 1.5032 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001158965729.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:29 Heat of formation + Delta-G solvation = -80.182300 kcal Electronic energy + Delta-G solvation = -21991.523457 eV Core-core repulsion = 18642.202010 eV Total energy + Delta-G solvation = -3349.321448 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.96596 -39.29488 -37.31889 -35.42290 -34.42364 -32.97350 -32.01669 -31.45506 -28.87778 -27.33053 -26.93579 -23.75123 -22.72171 -21.51783 -21.30296 -20.61200 -19.96358 -18.01560 -17.22028 -16.78351 -16.33465 -15.96905 -15.75592 -15.28783 -15.08899 -14.41157 -14.11196 -13.89908 -13.69592 -13.52140 -13.38347 -13.13391 -12.96608 -12.48009 -12.22582 -11.87547 -11.48983 -11.45759 -11.40297 -11.15332 -10.88610 -10.68942 -10.47690 -10.08051 -9.86182 -9.81032 -9.56239 -9.25300 -9.22122 -8.93020 -8.48623 -8.27307 -6.31720 -3.99718 0.91647 1.02684 2.80628 2.94634 3.36325 3.48203 3.52017 3.66611 3.87792 3.99760 4.32479 4.55724 4.59201 4.62802 4.68743 4.78264 4.94651 5.07975 5.15488 5.30637 5.35369 5.45465 5.46588 5.58418 5.61372 5.65675 5.74532 5.80326 6.04360 6.13647 6.14925 6.26208 6.39116 6.59784 6.61055 6.77042 7.00511 7.16256 7.45572 7.50525 7.57986 8.28806 8.35056 8.54049 8.94653 9.72019 11.09282 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.029044 B = 0.002655 C = 0.002577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 963.825970 B =10541.685059 C =10862.914892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.013 3.987 3 Si 1.074 2.926 4 H -0.289 1.289 5 H -0.287 1.287 6 H -0.287 1.287 7 C -0.599 4.599 8 H 0.050 0.950 9 C 0.007 3.993 10 C -0.088 4.088 11 C -0.139 4.139 12 C 0.517 3.483 13 O -0.531 6.531 14 N -0.729 5.729 15 C 0.154 3.846 16 H 0.113 0.887 17 C -0.094 4.094 18 C -0.069 4.069 19 C -0.112 4.112 20 C -0.108 4.108 21 C -0.128 4.128 22 C -0.094 4.094 23 C -0.147 4.147 24 C 0.142 3.858 25 H 0.072 0.928 26 O -0.548 6.548 27 H 0.268 0.732 28 H 0.007 0.993 29 H 0.006 0.994 30 H 0.056 0.944 31 H 0.057 0.943 32 H 0.089 0.911 33 H 0.088 0.912 34 H 0.400 0.600 35 H 0.085 0.915 36 H 0.094 0.906 37 H 0.122 0.878 38 H 0.125 0.875 39 H 0.125 0.875 40 H 0.120 0.880 41 H 0.383 0.617 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.087 -28.061 -2.599 28.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.190 4.190 3 Si 0.902 3.098 4 H -0.215 1.215 5 H -0.214 1.214 6 H -0.214 1.214 7 C -0.637 4.637 8 H 0.069 0.931 9 C -0.030 4.030 10 C -0.126 4.126 11 C -0.179 4.179 12 C 0.305 3.695 13 O -0.406 6.406 14 N -0.383 5.383 15 C 0.048 3.952 16 H 0.130 0.870 17 C -0.132 4.132 18 C -0.069 4.069 19 C -0.130 4.130 20 C -0.126 4.126 21 C -0.146 4.146 22 C -0.112 4.112 23 C -0.147 4.147 24 C 0.083 3.917 25 H 0.090 0.910 26 O -0.353 6.353 27 H 0.078 0.922 28 H 0.025 0.975 29 H 0.025 0.975 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.107 0.893 33 H 0.106 0.894 34 H 0.234 0.766 35 H 0.104 0.896 36 H 0.112 0.888 37 H 0.140 0.860 38 H 0.143 0.857 39 H 0.142 0.858 40 H 0.138 0.862 41 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges 1.197 -25.744 -2.725 25.916 hybrid contribution -0.832 -2.452 -0.016 2.589 sum 0.366 -28.196 -2.742 28.331 Atomic orbital electron populations 1.70730 1.06882 1.30532 1.47258 1.25863 0.96571 1.02765 0.93844 0.83481 0.74569 0.74809 0.76895 1.21469 1.21379 1.21368 1.22138 0.94528 0.91960 1.55086 0.93122 1.19266 0.94617 0.93318 0.95823 1.21314 0.98347 0.90935 1.01993 1.21866 0.98184 0.94074 1.03772 1.21218 0.90438 0.83366 0.74452 1.90696 1.17208 1.84547 1.48175 1.45991 1.09667 1.05265 1.77410 1.21174 0.93387 0.84452 0.96175 0.86959 1.21551 0.98362 0.96934 0.96402 1.20638 0.96357 0.96650 0.93235 1.20711 0.98541 0.97477 0.96266 1.21119 0.96202 0.96279 0.98979 1.21043 1.00560 1.00588 0.92389 1.20612 0.96956 0.96081 0.97556 1.21156 0.98365 0.98566 0.96619 1.21242 0.90901 0.89674 0.89894 0.91014 1.86531 1.38140 1.34385 1.76229 0.92157 0.97518 0.97528 0.92488 0.92459 0.89309 0.89351 0.76604 0.89629 0.88820 0.85956 0.85706 0.85752 0.86226 0.76959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -28.54 13.65 55.43 0.76 -27.79 16 2 C 0.01 0.38 5.46 -17.82 -0.10 0.28 16 3 Si 1.07 26.14 29.90 -169.99 -5.08 21.05 16 4 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 5 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 6 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 7 C -0.60 -17.69 9.11 -34.44 -0.31 -18.00 16 8 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16 9 C 0.01 0.18 4.28 -27.88 -0.12 0.06 16 10 C -0.09 -1.92 4.44 -26.73 -0.12 -2.04 16 11 C -0.14 -2.28 5.70 -27.88 -0.16 -2.44 16 12 C 0.52 8.21 7.83 -10.99 -0.09 8.13 16 13 O -0.53 -10.53 15.71 5.56 0.09 -10.44 16 14 N -0.73 -8.63 5.14 -52.44 -0.27 -8.90 16 15 C 0.15 1.77 3.08 -66.52 -0.20 1.56 16 16 H 0.11 1.53 7.67 -51.93 -0.40 1.13 16 17 C -0.09 -1.05 6.48 -26.85 -0.17 -1.23 16 18 C -0.07 -0.70 6.14 -104.21 -0.64 -1.34 16 19 C -0.11 -1.03 10.04 -39.53 -0.40 -1.43 16 20 C -0.11 -0.85 10.05 -39.62 -0.40 -1.24 16 21 C -0.13 -0.94 10.05 -39.62 -0.40 -1.34 16 22 C -0.09 -0.72 10.04 -39.54 -0.40 -1.11 16 23 C -0.15 -1.33 5.81 -104.21 -0.61 -1.94 16 24 C 0.14 1.29 3.82 -26.84 -0.10 1.19 16 25 H 0.07 0.55 8.05 -51.92 -0.42 0.13 16 26 O -0.55 -4.94 13.36 -35.23 -0.47 -5.41 16 27 H 0.27 8.24 7.22 -40.82 -0.29 7.94 16 28 H 0.01 0.17 8.00 -51.93 -0.42 -0.24 16 29 H 0.01 0.17 8.01 -51.93 -0.42 -0.24 16 30 H 0.06 1.30 8.10 -51.93 -0.42 0.88 16 31 H 0.06 1.31 8.10 -51.93 -0.42 0.89 16 32 H 0.09 1.31 8.14 -51.93 -0.42 0.88 16 33 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 34 H 0.40 3.71 8.58 -40.82 -0.35 3.36 16 35 H 0.09 1.05 8.09 -51.93 -0.42 0.63 16 36 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.12 0.98 8.06 -52.48 -0.42 0.55 16 38 H 0.12 0.71 8.06 -52.49 -0.42 0.29 16 39 H 0.12 0.64 8.06 -52.49 -0.42 0.21 16 40 H 0.12 0.64 8.06 -52.48 -0.42 0.21 16 41 H 0.38 1.78 9.12 45.56 0.42 2.19 16 LS Contribution 346.76 15.07 5.23 5.23 Total: -1.00 -35.62 346.76 -9.27 -44.88 By element: Atomic # 1 Polarization: 7.56 SS G_CDS: -5.30 Total: 2.26 kcal Atomic # 6 Polarization: -16.68 SS G_CDS: -4.21 Total: -20.89 kcal Atomic # 7 Polarization: -37.17 SS G_CDS: 0.49 Total: -36.68 kcal Atomic # 8 Polarization: -15.46 SS G_CDS: -0.38 Total: -15.85 kcal Atomic # 14 Polarization: 26.14 SS G_CDS: -5.08 Total: 21.05 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -35.62 -9.27 -44.88 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158965729.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.299 kcal (2) G-P(sol) polarization free energy of solvation -35.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.883 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds