Wall clock time and date at job start Tue Mar 31 2020 06:55:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00588 * 2 1 4 4 H 1.48501 * 109.47364 * 179.72223 * 3 2 1 5 5 H 1.48508 * 109.46883 * 299.72346 * 3 2 1 6 6 H 1.48497 * 109.46870 * 59.72156 * 3 2 1 7 7 C 1.37884 * 119.99573 * 179.72306 * 2 1 3 8 8 H 1.07999 * 120.00052 * 180.28126 * 7 2 1 9 9 C 1.50696 * 119.99746 * 0.27650 * 7 2 1 10 10 C 1.53002 * 109.46919 * 180.02562 * 9 7 2 11 11 C 1.53006 * 109.47348 * 179.97438 * 10 9 7 12 12 C 1.50699 * 109.47240 * 179.97438 * 11 10 9 13 13 O 1.21282 * 120.00041 * 0.02562 * 12 11 10 14 14 N 1.34779 * 120.00033 * 180.02562 * 12 11 10 15 15 C 1.46497 * 119.99798 * 179.97438 * 14 12 11 16 16 H 1.08998 * 110.73163 * 36.95625 * 15 14 12 17 17 C 1.54338 * 110.82215 * 273.54070 * 15 14 12 18 18 C 1.51367 * 105.17370 * 268.12316 * 17 15 14 19 19 C 1.38503 * 130.39370 * 162.85267 * 18 17 15 20 20 C 1.38104 * 120.21634 * 180.02562 * 19 18 17 21 21 C 1.38260 * 119.93459 * 359.91343 * 20 19 18 22 22 C 1.38104 * 119.93069 * 0.03244 * 21 20 19 23 23 C 1.38215 * 109.76017 * 342.81795 * 18 17 15 24 24 C 1.51371 * 109.75507 * 359.97438 * 23 18 17 25 25 H 1.09008 * 110.29589 * 136.11691 * 24 23 18 26 26 O 1.42898 * 110.30529 * 258.26791 * 24 23 18 27 27 H 0.97001 * 120.00651 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47319 * 299.99477 * 9 7 2 29 29 H 1.08999 * 109.47742 * 60.00602 * 9 7 2 30 30 H 1.09004 * 109.46930 * 299.99899 * 10 9 7 31 31 H 1.09000 * 109.47312 * 59.99955 * 10 9 7 32 32 H 1.09001 * 109.46611 * 299.99902 * 11 10 9 33 33 H 1.09000 * 109.46866 * 59.99785 * 11 10 9 34 34 H 0.97004 * 119.99472 * 359.97438 * 14 12 11 35 35 H 1.08998 * 110.30660 * 27.04875 * 17 15 14 36 36 H 1.08998 * 110.30227 * 149.09877 * 17 15 14 37 37 H 1.08003 * 119.89161 * 359.94077 * 19 18 17 38 38 H 1.07997 * 120.03703 * 179.97438 * 20 19 18 39 39 H 1.07999 * 120.02961 * 180.02562 * 21 20 19 40 40 H 1.08005 * 119.88673 * 179.97438 * 22 21 20 41 41 H 0.96700 * 114.00239 * 295.74709 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.7093 1.3462 0.0068 5 1 1.8957 2.3934 -1.2159 6 1 1.8855 2.3993 1.2091 7 6 2.0045 -1.1941 0.0058 8 1 3.0845 -1.1942 0.0104 9 6 1.2508 -2.4991 0.0058 10 6 2.2450 -3.6621 0.0134 11 6 1.4799 -4.9872 0.0141 12 6 2.4591 -6.1327 0.0209 13 8 3.6515 -5.9111 0.0254 14 7 2.0098 -7.4033 0.0221 15 6 2.9618 -8.5168 0.0282 16 1 3.8293 -8.2794 0.6438 17 6 3.3914 -8.8792 -1.4092 18 6 2.4225 -9.9541 -1.8532 19 6 2.1228 -10.4241 -3.1211 20 6 1.1888 -11.4277 -3.2875 21 6 0.5516 -11.9669 -2.1852 22 6 0.8500 -11.5002 -0.9201 23 6 1.7852 -10.4928 -0.7514 24 6 2.2826 -9.8171 0.5085 25 1 1.4466 -9.5853 1.1686 26 8 3.2282 -10.6527 1.1790 27 1 -0.4851 -0.8400 -0.0004 28 1 0.6205 -2.5547 0.8933 29 1 0.6280 -2.5591 -0.8867 30 1 2.8757 -3.6068 -0.8739 31 1 2.8676 -3.6021 0.9061 32 1 0.8495 -5.0422 0.9016 33 1 0.8570 -5.0475 -0.8784 34 1 1.0561 -7.5805 0.0189 35 1 3.3127 -8.0074 -2.0587 36 1 4.4118 -9.2624 -1.4137 37 1 2.6201 -10.0035 -3.9826 38 1 0.9570 -11.7918 -4.2774 39 1 -0.1788 -12.7520 -2.3135 40 1 0.3515 -11.9216 -0.0596 41 1 2.8574 -11.4848 1.5032 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001158965729.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:29 Heat of formation + Delta-G solvation = -105.130008 kcal Electronic energy + Delta-G solvation = -21992.605271 eV Core-core repulsion = 18642.202010 eV Total energy + Delta-G solvation = -3350.403261 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.78902 -40.44450 -38.03419 -36.58489 -36.17024 -34.21752 -33.69257 -32.07616 -30.05867 -28.73616 -27.76139 -25.65753 -23.66796 -22.78919 -22.09402 -21.69098 -21.33895 -19.08750 -18.76951 -17.93944 -17.42915 -16.97691 -16.80321 -16.15127 -15.98720 -15.67236 -15.45675 -15.07845 -15.00063 -14.90045 -14.61768 -14.24977 -13.99420 -13.54235 -13.40676 -13.09630 -12.98342 -12.63365 -12.61205 -12.53053 -12.11908 -11.97119 -11.84095 -11.80145 -11.68296 -11.15063 -11.03701 -10.62913 -10.53893 -10.32081 -9.84330 -9.61068 -8.69579 -6.39018 0.29629 0.40578 1.51444 1.53428 1.60862 1.78705 1.90886 2.55594 2.73433 3.11212 3.14906 3.29182 3.57718 3.80751 3.85690 3.95013 4.07315 4.12463 4.14740 4.18881 4.27447 4.47622 4.56927 4.61511 4.70061 4.74660 4.79011 4.80857 4.91340 4.97113 5.00714 5.12046 5.34225 5.45810 5.47177 5.51668 5.55431 5.60683 6.02236 6.02428 6.19314 6.41779 6.60579 6.73017 7.15557 7.40852 8.72392 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.029044 B = 0.002655 C = 0.002577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 963.825970 B =10541.685059 C =10862.914892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.037 4.037 3 Si 1.120 2.880 4 H -0.276 1.276 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.624 4.624 8 H 0.041 0.959 9 C 0.010 3.990 10 C -0.077 4.077 11 C -0.129 4.129 12 C 0.521 3.479 13 O -0.578 6.578 14 N -0.706 5.706 15 C 0.147 3.853 16 H 0.088 0.912 17 C -0.091 4.091 18 C -0.092 4.092 19 C -0.128 4.128 20 C -0.112 4.112 21 C -0.128 4.128 22 C -0.093 4.093 23 C -0.150 4.150 24 C 0.154 3.846 25 H 0.092 0.908 26 O -0.564 6.564 27 H 0.259 0.741 28 H -0.001 1.001 29 H -0.001 1.001 30 H 0.039 0.961 31 H 0.041 0.959 32 H 0.112 0.888 33 H 0.109 0.891 34 H 0.416 0.584 35 H 0.066 0.934 36 H 0.088 0.912 37 H 0.124 0.876 38 H 0.145 0.855 39 H 0.151 0.849 40 H 0.147 0.853 41 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.205 -29.840 -2.485 29.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.234 4.234 3 Si 0.942 3.058 4 H -0.202 1.202 5 H -0.200 1.200 6 H -0.200 1.200 7 C -0.662 4.662 8 H 0.059 0.941 9 C -0.027 4.027 10 C -0.115 4.115 11 C -0.169 4.169 12 C 0.310 3.690 13 O -0.457 6.457 14 N -0.360 5.360 15 C 0.042 3.958 16 H 0.106 0.894 17 C -0.129 4.129 18 C -0.092 4.092 19 C -0.146 4.146 20 C -0.130 4.130 21 C -0.145 4.145 22 C -0.111 4.111 23 C -0.151 4.151 24 C 0.094 3.906 25 H 0.110 0.890 26 O -0.373 6.373 27 H 0.068 0.932 28 H 0.018 0.982 29 H 0.017 0.983 30 H 0.058 0.942 31 H 0.059 0.941 32 H 0.130 0.870 33 H 0.127 0.873 34 H 0.254 0.746 35 H 0.085 0.915 36 H 0.106 0.894 37 H 0.142 0.858 38 H 0.163 0.837 39 H 0.169 0.831 40 H 0.165 0.835 41 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges -0.143 -27.596 -2.607 27.719 hybrid contribution -0.445 -2.009 -0.075 2.059 sum -0.588 -29.605 -2.682 29.732 Atomic orbital electron populations 1.70855 1.07666 1.30067 1.48798 1.27387 0.96713 1.06643 0.92688 0.82892 0.74000 0.71111 0.77827 1.20151 1.20031 1.20028 1.22569 0.94483 0.93950 1.55184 0.94078 1.19192 0.94911 0.93765 0.94882 1.21046 0.97403 0.92649 1.00382 1.21688 0.97879 0.91361 1.05975 1.21024 0.89451 0.84443 0.74117 1.90686 1.18964 1.85319 1.50715 1.45679 1.10713 1.04116 1.75469 1.21183 0.92884 0.85476 0.96266 0.89435 1.21426 0.98768 0.96857 0.95898 1.20615 0.97061 0.97189 0.94328 1.20897 0.99368 0.98293 0.96068 1.21427 0.95528 0.95617 1.00435 1.21438 1.00437 1.00665 0.92002 1.20938 0.96192 0.95187 0.98795 1.21190 0.98861 0.99204 0.95835 1.21049 0.90821 0.88311 0.90409 0.88989 1.86489 1.38847 1.35611 1.76308 0.93177 0.98222 0.98308 0.94170 0.94057 0.86959 0.87263 0.74643 0.91491 0.89410 0.85788 0.83708 0.83114 0.83489 0.74655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.56 13.65 21.45 0.29 -58.26 16 2 C -0.04 -2.20 5.46 84.66 0.46 -1.73 16 3 Si 1.12 52.21 29.90 68.60 2.05 54.26 16 4 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 5 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 6 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 7 C -0.62 -37.46 9.11 25.60 0.23 -37.23 16 8 H 0.04 2.48 7.74 -2.91 -0.02 2.46 16 9 C 0.01 0.50 4.28 29.85 0.13 0.63 16 10 C -0.08 -3.41 4.44 30.60 0.14 -3.27 16 11 C -0.13 -4.14 5.70 29.85 0.17 -3.97 16 12 C 0.52 16.52 7.83 87.66 0.69 17.21 16 13 O -0.58 -23.67 15.71 -3.04 -0.05 -23.71 16 14 N -0.71 -16.11 5.14 -438.21 -2.25 -18.36 16 15 C 0.15 3.38 3.08 45.91 0.14 3.53 16 16 H 0.09 2.48 7.67 -2.39 -0.02 2.46 16 17 C -0.09 -2.11 6.48 30.51 0.20 -1.91 16 18 C -0.09 -1.81 6.14 -19.59 -0.12 -1.93 16 19 C -0.13 -2.25 10.04 22.30 0.22 -2.03 16 20 C -0.11 -1.51 10.05 22.24 0.22 -1.28 16 21 C -0.13 -1.44 10.05 22.24 0.22 -1.22 16 22 C -0.09 -1.11 10.04 22.30 0.22 -0.88 16 23 C -0.15 -2.43 5.81 -19.60 -0.11 -2.54 16 24 C 0.15 2.52 3.82 30.52 0.12 2.63 16 25 H 0.09 1.14 8.05 -2.38 -0.02 1.12 16 26 O -0.56 -9.29 13.36 -148.98 -1.99 -11.28 16 27 H 0.26 16.13 7.22 -92.71 -0.67 15.46 16 28 H 0.00 -0.03 8.00 -2.39 -0.02 -0.05 16 29 H 0.00 -0.07 8.01 -2.39 -0.02 -0.09 16 30 H 0.04 1.89 8.10 -2.38 -0.02 1.87 16 31 H 0.04 1.94 8.10 -2.39 -0.02 1.92 16 32 H 0.11 3.09 8.14 -2.39 -0.02 3.07 16 33 H 0.11 3.07 8.14 -2.39 -0.02 3.05 16 34 H 0.42 6.82 8.58 -92.71 -0.80 6.03 16 35 H 0.07 1.75 8.09 -2.39 -0.02 1.73 16 36 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 37 H 0.12 1.99 8.06 -2.91 -0.02 1.96 16 38 H 0.15 1.27 8.06 -2.91 -0.02 1.25 16 39 H 0.15 0.88 8.06 -2.91 -0.02 0.86 16 40 H 0.15 0.90 8.06 -2.91 -0.02 0.88 16 41 H 0.40 2.78 9.12 -74.06 -0.68 2.10 16 Total: -1.00 -78.42 346.76 0.66 -77.76 By element: Atomic # 1 Polarization: 13.92 SS G_CDS: -0.33 Total: 13.60 kcal Atomic # 6 Polarization: -36.93 SS G_CDS: 2.93 Total: -34.00 kcal Atomic # 7 Polarization: -74.66 SS G_CDS: -1.96 Total: -76.63 kcal Atomic # 8 Polarization: -32.96 SS G_CDS: -2.04 Total: -34.99 kcal Atomic # 14 Polarization: 52.21 SS G_CDS: 2.05 Total: 54.26 kcal Total: -78.42 0.66 -77.76 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158965729.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.371 kcal (2) G-P(sol) polarization free energy of solvation -78.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds