Wall clock time and date at job start Tue Mar 31 2020 06:34:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 109.46838 * 2 1 4 4 H 1.08999 * 109.47278 * 305.33221 * 3 2 1 5 5 C 1.50702 * 109.46728 * 185.33691 * 3 2 1 6 6 H 1.08004 * 119.99944 * 244.78556 * 5 3 2 7 7 C 1.37873 * 120.00187 * 64.78461 * 5 3 2 8 8 N 1.31515 * 119.99871 * 7.04842 * 7 5 3 9 9 Si 1.86803 * 120.00139 * 187.04386 * 7 5 3 10 10 H 1.48491 * 109.47003 * 84.99341 * 9 7 5 11 11 H 1.48504 * 109.47072 * 204.99537 * 9 7 5 12 12 H 1.48495 * 109.46926 * 324.99099 * 9 7 5 13 13 N 1.46501 * 109.46972 * 65.33936 * 3 2 1 14 14 C 1.37882 * 119.99690 * 274.99518 * 13 3 2 15 15 N 1.32627 * 120.91250 * 359.72191 * 14 13 3 16 16 C 1.32345 * 121.49116 * 179.75901 * 15 14 13 17 17 C 1.50708 * 118.51516 * 180.27631 * 16 15 14 18 18 N 1.31180 * 122.97433 * 0.54132 * 16 15 14 19 19 C 1.34147 * 120.46205 * 359.73137 * 18 16 15 20 20 C 1.40160 * 121.95592 * 179.97438 * 19 18 16 21 21 C 1.36283 * 119.61576 * 180.02562 * 20 19 18 22 22 C 1.39420 * 121.00321 * 0.02562 * 21 20 19 23 23 F 1.35099 * 119.57428 * 180.02562 * 22 21 20 24 24 C 1.36573 * 120.84358 * 359.95492 * 22 21 20 25 25 C 1.39923 * 119.49219 * 0.04579 * 24 22 21 26 26 H 1.08996 * 109.47258 * 59.99990 * 1 2 3 27 27 H 1.08998 * 109.47266 * 300.00126 * 1 2 3 28 28 H 1.09000 * 109.47307 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47021 * 119.99514 * 2 1 3 30 30 H 1.08998 * 109.47266 * 239.99874 * 2 1 3 31 31 H 0.96998 * 120.00201 * 180.02562 * 8 7 5 32 32 H 0.96996 * 120.00097 * 95.00078 * 13 3 2 33 33 H 1.09004 * 109.46811 * 270.25246 * 17 16 15 34 34 H 1.09003 * 109.47045 * 30.25010 * 17 16 15 35 35 H 1.09000 * 109.47158 * 150.25081 * 17 16 15 36 36 H 1.08003 * 120.19446 * 0.05290 * 20 19 18 37 37 H 1.07996 * 119.50192 * 180.02562 * 21 20 19 38 38 H 1.08005 * 120.25478 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6007 1.9832 -0.8384 5 6 3.5411 1.4446 -0.1322 6 1 4.1538 1.8173 0.6754 7 6 4.1324 0.9706 -1.2839 8 7 3.3891 0.6466 -2.3193 9 14 5.9894 0.7886 -1.3738 10 1 6.3866 -0.5221 -0.8000 11 1 6.4258 0.8612 -2.7914 12 1 6.6318 1.8823 -0.6015 13 7 1.6593 2.0950 1.2553 14 6 0.4146 2.6747 1.3811 15 7 -0.4501 2.6570 0.3755 16 6 -1.6494 3.2057 0.4853 17 6 -2.5810 3.1414 -0.6976 18 7 -2.0621 3.8075 1.5754 19 6 -1.2651 3.8875 2.6514 20 6 -1.6738 4.5234 3.8317 21 6 -0.8248 4.5773 4.8964 22 6 0.4468 4.0094 4.8304 23 9 1.2647 4.0793 5.9034 24 6 0.8755 3.3823 3.6955 25 6 0.0267 3.3106 2.5855 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 1.8933 -0.5137 0.8900 30 1 1.8933 -0.5138 -0.8899 31 1 3.8050 0.3128 -3.1295 32 1 2.2829 2.1192 1.9978 33 1 -2.4260 4.0155 -1.3301 34 1 -2.3779 2.2371 -1.2713 35 1 -3.6129 3.1250 -0.3469 36 1 -2.6560 4.9677 3.8973 37 1 -1.1418 5.0674 5.8051 38 1 1.8624 2.9453 3.6549 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001161049645.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:47 Heat of formation + Delta-G solvation = 15.833562 kcal Electronic energy + Delta-G solvation = -22849.431416 eV Core-core repulsion = 19413.105975 eV Total energy + Delta-G solvation = -3436.325441 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.129 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -48.80795 -40.98987 -37.50069 -36.80033 -33.83763 -31.98404 -31.83167 -30.62482 -30.39374 -27.66248 -26.90719 -24.22950 -23.06358 -22.68912 -21.61784 -20.12391 -18.47289 -18.16690 -17.16857 -16.51169 -15.90939 -15.63796 -15.19462 -15.03490 -14.85118 -14.24384 -13.89818 -13.64901 -13.50993 -13.21026 -12.79160 -12.75937 -12.67587 -12.07823 -11.83350 -11.50618 -11.42486 -11.32743 -11.08006 -11.00346 -10.74383 -10.46455 -10.30245 -10.27773 -9.77902 -9.24264 -9.06815 -8.72077 -8.63304 -8.45592 -7.17823 -6.26389 -4.33893 0.61166 0.91937 2.21467 3.07083 3.18170 3.25452 3.26286 3.64530 4.24549 4.27085 4.35452 4.38521 4.54486 4.66129 4.91171 5.05886 5.07415 5.37467 5.51383 5.75596 5.84357 5.89028 5.91922 6.06177 6.11359 6.18123 6.23417 6.27389 6.45500 6.63276 6.78283 6.88138 7.02304 7.17634 7.30164 7.33514 7.53513 7.65769 7.87306 7.97791 8.29489 8.66945 8.87336 9.32154 10.81091 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.015819 B = 0.005367 C = 0.004275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1769.573396 B = 5216.065065 C = 6547.430043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.120 4.120 3 C 0.269 3.731 4 H 0.068 0.932 5 C -0.544 4.544 6 H 0.061 0.939 7 C 0.073 3.927 8 N -0.877 5.877 9 Si 0.899 3.101 10 H -0.278 1.278 11 H -0.284 1.284 12 H -0.274 1.274 13 N -0.658 5.658 14 C 0.481 3.519 15 N -0.579 5.579 16 C 0.375 3.625 17 C -0.083 4.083 18 N -0.579 5.579 19 C 0.192 3.808 20 C -0.092 4.092 21 C -0.108 4.108 22 C 0.058 3.942 23 F -0.144 7.144 24 C -0.090 4.090 25 C -0.196 4.196 26 H 0.059 0.941 27 H 0.033 0.967 28 H 0.023 0.977 29 H 0.032 0.968 30 H 0.086 0.914 31 H 0.266 0.734 32 H 0.401 0.599 33 H 0.082 0.918 34 H 0.084 0.916 35 H 0.079 0.921 36 H 0.143 0.857 37 H 0.138 0.862 38 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.490 4.635 8.927 13.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.159 4.159 3 C 0.168 3.832 4 H 0.085 0.915 5 C -0.582 4.582 6 H 0.079 0.921 7 C -0.132 4.132 8 N -0.513 5.513 9 Si 0.726 3.274 10 H -0.203 1.203 11 H -0.210 1.210 12 H -0.199 1.199 13 N -0.281 5.281 14 C 0.224 3.776 15 N -0.308 5.308 16 C 0.105 3.895 17 C -0.142 4.142 18 N -0.303 5.303 19 C 0.065 3.935 20 C -0.112 4.112 21 C -0.130 4.130 22 C 0.038 3.962 23 F -0.123 7.123 24 C -0.111 4.111 25 C -0.206 4.206 26 H 0.078 0.922 27 H 0.052 0.948 28 H 0.042 0.958 29 H 0.051 0.949 30 H 0.105 0.895 31 H 0.076 0.924 32 H 0.238 0.762 33 H 0.101 0.899 34 H 0.103 0.897 35 H 0.098 0.902 36 H 0.161 0.839 37 H 0.156 0.844 38 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -8.988 4.439 7.814 12.710 hybrid contribution 2.138 -0.143 1.168 2.441 sum -6.850 4.296 8.982 12.085 Atomic orbital electron populations 1.21836 0.97940 0.98114 1.01297 1.21860 0.93094 0.99416 1.01532 1.19071 0.94696 0.89263 0.80195 0.91458 1.21137 0.90334 1.44268 1.02482 0.92119 1.24838 0.98611 0.94798 0.94933 1.69948 1.35535 1.42562 1.03291 0.86495 0.84743 0.78718 0.77400 1.20341 1.21006 1.19893 1.45668 1.10115 1.53224 1.19091 1.18766 0.87181 0.84629 0.87059 1.68112 1.04394 1.27853 1.30422 1.22857 0.88741 0.85326 0.92532 1.20540 0.96666 1.03850 0.93110 1.68634 1.35768 1.25316 1.00541 1.18700 0.88500 0.92887 0.93440 1.20464 1.00322 0.99877 0.90502 1.20865 0.92303 0.99761 1.00024 1.17142 0.89958 1.04442 0.84672 1.91483 1.71894 1.95020 1.53869 1.20683 1.00067 0.98820 0.91572 1.18807 0.97801 1.08237 0.95732 0.92244 0.94784 0.95787 0.94879 0.89512 0.92379 0.76233 0.89935 0.89671 0.90175 0.83904 0.84418 0.84617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.70 8.46 37.15 0.31 -2.39 16 2 C -0.12 -2.68 5.49 -26.73 -0.15 -2.83 16 3 C 0.27 6.25 2.12 -69.08 -0.15 6.10 16 4 H 0.07 1.79 7.55 -51.93 -0.39 1.40 16 5 C -0.54 -13.65 8.67 -34.44 -0.30 -13.94 16 6 H 0.06 1.48 7.73 -52.48 -0.41 1.07 16 7 C 0.07 1.87 5.20 -17.82 -0.09 1.77 16 8 N -0.88 -23.46 12.00 55.43 0.66 -22.80 16 9 Si 0.90 19.94 29.54 -169.99 -5.02 14.92 16 10 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 11 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 12 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 13 N -0.66 -12.96 5.08 -54.61 -0.28 -13.24 16 14 C 0.48 9.19 6.09 -154.95 -0.94 8.25 16 15 N -0.58 -11.26 6.50 -9.70 -0.06 -11.33 16 16 C 0.38 6.53 7.62 -157.24 -1.20 5.33 16 17 C -0.08 -1.12 10.28 36.01 0.37 -0.75 16 18 N -0.58 -9.95 10.32 -8.81 -0.09 -10.04 16 19 C 0.19 3.17 6.61 -84.84 -0.56 2.60 16 20 C -0.09 -1.21 10.01 -39.56 -0.40 -1.60 16 21 C -0.11 -1.29 9.92 -39.85 -0.40 -1.68 16 22 C 0.06 0.79 7.24 -39.74 -0.29 0.51 16 23 F -0.14 -1.96 17.25 2.25 0.04 -1.92 16 24 C -0.09 -1.34 9.50 -39.55 -0.38 -1.72 16 25 C -0.20 -3.35 5.75 -106.69 -0.61 -3.96 16 26 H 0.06 1.23 7.72 -51.93 -0.40 0.83 16 27 H 0.03 0.68 5.59 -51.93 -0.29 0.39 16 28 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 30 H 0.09 2.15 6.64 -51.93 -0.34 1.81 16 31 H 0.27 6.80 8.31 -40.82 -0.34 6.46 16 32 H 0.40 7.09 6.78 -40.82 -0.28 6.81 16 33 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 35 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 36 H 0.14 1.55 8.06 -52.48 -0.42 1.12 16 37 H 0.14 1.22 8.06 -52.49 -0.42 0.79 16 38 H 0.14 1.84 6.59 -52.48 -0.35 1.49 16 LS Contribution 318.71 15.07 4.80 4.80 Total: -1.00 -27.63 318.71 -9.27 -36.90 By element: Atomic # 1 Polarization: 11.56 SS G_CDS: -4.55 Total: 7.01 kcal Atomic # 6 Polarization: 0.47 SS G_CDS: -4.77 Total: -4.30 kcal Atomic # 7 Polarization: -57.64 SS G_CDS: 0.23 Total: -57.41 kcal Atomic # 9 Polarization: -1.96 SS G_CDS: 0.04 Total: -1.92 kcal Atomic # 14 Polarization: 19.94 SS G_CDS: -5.02 Total: 14.92 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -27.63 -9.27 -36.90 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161049645.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.730 kcal (2) G-P(sol) polarization free energy of solvation -27.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.896 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds