Wall clock time and date at job start Tue Mar 31 2020 06:34:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 109.46838 * 2 1 4 4 H 1.08999 * 109.47278 * 305.33221 * 3 2 1 5 5 C 1.50702 * 109.46728 * 185.33691 * 3 2 1 6 6 H 1.08004 * 119.99944 * 244.78556 * 5 3 2 7 7 C 1.37873 * 120.00187 * 64.78461 * 5 3 2 8 8 N 1.31515 * 119.99871 * 7.04842 * 7 5 3 9 9 Si 1.86803 * 120.00139 * 187.04386 * 7 5 3 10 10 H 1.48491 * 109.47003 * 84.99341 * 9 7 5 11 11 H 1.48504 * 109.47072 * 204.99537 * 9 7 5 12 12 H 1.48495 * 109.46926 * 324.99099 * 9 7 5 13 13 N 1.46501 * 109.46972 * 65.33936 * 3 2 1 14 14 C 1.37882 * 119.99690 * 274.99518 * 13 3 2 15 15 N 1.32627 * 120.91250 * 359.72191 * 14 13 3 16 16 C 1.32345 * 121.49116 * 179.75901 * 15 14 13 17 17 C 1.50708 * 118.51516 * 180.27631 * 16 15 14 18 18 N 1.31180 * 122.97433 * 0.54132 * 16 15 14 19 19 C 1.34147 * 120.46205 * 359.73137 * 18 16 15 20 20 C 1.40160 * 121.95592 * 179.97438 * 19 18 16 21 21 C 1.36283 * 119.61576 * 180.02562 * 20 19 18 22 22 C 1.39420 * 121.00321 * 0.02562 * 21 20 19 23 23 F 1.35099 * 119.57428 * 180.02562 * 22 21 20 24 24 C 1.36573 * 120.84358 * 359.95492 * 22 21 20 25 25 C 1.39923 * 119.49219 * 0.04579 * 24 22 21 26 26 H 1.08996 * 109.47258 * 59.99990 * 1 2 3 27 27 H 1.08998 * 109.47266 * 300.00126 * 1 2 3 28 28 H 1.09000 * 109.47307 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47021 * 119.99514 * 2 1 3 30 30 H 1.08998 * 109.47266 * 239.99874 * 2 1 3 31 31 H 0.96998 * 120.00201 * 180.02562 * 8 7 5 32 32 H 0.96996 * 120.00097 * 95.00078 * 13 3 2 33 33 H 1.09004 * 109.46811 * 270.25246 * 17 16 15 34 34 H 1.09003 * 109.47045 * 30.25010 * 17 16 15 35 35 H 1.09000 * 109.47158 * 150.25081 * 17 16 15 36 36 H 1.08003 * 120.19446 * 0.05290 * 20 19 18 37 37 H 1.07996 * 119.50192 * 180.02562 * 21 20 19 38 38 H 1.08005 * 120.25478 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6007 1.9832 -0.8384 5 6 3.5411 1.4446 -0.1322 6 1 4.1538 1.8173 0.6754 7 6 4.1324 0.9706 -1.2839 8 7 3.3891 0.6466 -2.3193 9 14 5.9894 0.7886 -1.3738 10 1 6.3866 -0.5221 -0.8000 11 1 6.4258 0.8612 -2.7914 12 1 6.6318 1.8823 -0.6015 13 7 1.6593 2.0950 1.2553 14 6 0.4146 2.6747 1.3811 15 7 -0.4501 2.6570 0.3755 16 6 -1.6494 3.2057 0.4853 17 6 -2.5810 3.1414 -0.6976 18 7 -2.0621 3.8075 1.5754 19 6 -1.2651 3.8875 2.6514 20 6 -1.6738 4.5234 3.8317 21 6 -0.8248 4.5773 4.8964 22 6 0.4468 4.0094 4.8304 23 9 1.2647 4.0793 5.9034 24 6 0.8755 3.3823 3.6955 25 6 0.0267 3.3106 2.5855 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 1.8933 -0.5137 0.8900 30 1 1.8933 -0.5138 -0.8899 31 1 3.8050 0.3128 -3.1295 32 1 2.2829 2.1192 1.9978 33 1 -2.4260 4.0155 -1.3301 34 1 -2.3779 2.2371 -1.2713 35 1 -3.6129 3.1250 -0.3469 36 1 -2.6560 4.9677 3.8973 37 1 -1.1418 5.0674 5.8051 38 1 1.8624 2.9453 3.6549 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001161049645.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:46 Heat of formation + Delta-G solvation = 2.017057 kcal Electronic energy + Delta-G solvation = -22850.030544 eV Core-core repulsion = 19413.105975 eV Total energy + Delta-G solvation = -3436.924570 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.129 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -49.91206 -42.27474 -38.82906 -38.21539 -35.47613 -33.64558 -33.17668 -31.91283 -31.76573 -29.00930 -28.50533 -25.62012 -24.73177 -23.89247 -22.95415 -21.81442 -19.77133 -19.42293 -18.68114 -18.02965 -17.17980 -16.89223 -16.79514 -16.34206 -16.26092 -15.68806 -15.28398 -14.90299 -14.79876 -14.55027 -14.42458 -13.91115 -13.83443 -13.58957 -13.28690 -13.08449 -12.91144 -12.82918 -12.54749 -12.52392 -12.24970 -12.12624 -11.90816 -11.75475 -11.51293 -11.07128 -10.56244 -10.21543 -10.04092 -9.91861 -8.56279 -8.21220 -6.34948 -0.58003 -0.27558 0.93005 1.42505 1.43692 1.52160 1.91367 2.17222 2.43771 3.08902 3.11958 3.13554 3.17631 3.34028 3.52789 3.73533 3.93394 4.22164 4.36985 4.50794 4.54224 4.62784 4.71692 4.80618 4.81597 4.86017 4.97701 5.06048 5.06689 5.09583 5.24438 5.39631 5.46902 5.55288 5.62831 5.70822 5.78608 5.93505 6.08038 6.35594 6.66309 6.85952 7.33843 7.50696 8.85967 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.015819 B = 0.005367 C = 0.004275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1769.573396 B = 5216.065065 C = 6547.430043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.112 4.112 3 C 0.283 3.717 4 H 0.027 0.973 5 C -0.557 4.557 6 H 0.065 0.935 7 C 0.026 3.974 8 N -0.908 5.908 9 Si 0.961 3.039 10 H -0.272 1.272 11 H -0.285 1.285 12 H -0.269 1.269 13 N -0.666 5.666 14 C 0.467 3.533 15 N -0.604 5.604 16 C 0.355 3.645 17 C -0.079 4.079 18 N -0.577 5.577 19 C 0.168 3.832 20 C -0.086 4.086 21 C -0.091 4.091 22 C 0.068 3.932 23 F -0.141 7.141 24 C -0.105 4.105 25 C -0.206 4.206 26 H 0.047 0.953 27 H 0.033 0.967 28 H 0.040 0.960 29 H 0.035 0.965 30 H 0.059 0.941 31 H 0.266 0.734 32 H 0.409 0.591 33 H 0.093 0.907 34 H 0.081 0.919 35 H 0.100 0.900 36 H 0.171 0.829 37 H 0.179 0.821 38 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.154 5.584 11.111 15.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.152 4.152 3 C 0.181 3.819 4 H 0.045 0.955 5 C -0.595 4.595 6 H 0.083 0.917 7 C -0.175 4.175 8 N -0.545 5.545 9 Si 0.787 3.213 10 H -0.197 1.197 11 H -0.211 1.211 12 H -0.194 1.194 13 N -0.292 5.292 14 C 0.210 3.790 15 N -0.333 5.333 16 C 0.086 3.914 17 C -0.137 4.137 18 N -0.299 5.299 19 C 0.041 3.959 20 C -0.105 4.105 21 C -0.112 4.112 22 C 0.047 3.953 23 F -0.120 7.120 24 C -0.127 4.127 25 C -0.215 4.215 26 H 0.067 0.933 27 H 0.052 0.948 28 H 0.059 0.941 29 H 0.054 0.946 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.246 0.754 33 H 0.111 0.889 34 H 0.100 0.900 35 H 0.119 0.881 36 H 0.188 0.812 37 H 0.197 0.803 38 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -9.688 5.414 10.034 14.962 hybrid contribution 2.258 -0.329 0.626 2.366 sum -7.430 5.085 10.660 13.954 Atomic orbital electron populations 1.21642 0.96200 0.98915 1.00722 1.21702 0.94545 0.98736 1.00170 1.18566 0.93529 0.89261 0.80577 0.95512 1.21497 0.91559 1.43841 1.02578 0.91734 1.25607 1.02652 0.94599 0.94672 1.70071 1.37166 1.43507 1.03755 0.85523 0.79830 0.78805 0.77185 1.19743 1.21076 1.19386 1.45263 1.11049 1.54646 1.18216 1.18965 0.86838 0.85075 0.88107 1.68109 1.05343 1.28678 1.31217 1.23495 0.88693 0.85466 0.93794 1.20621 0.96920 1.04132 0.92002 1.68684 1.35818 1.24762 1.00664 1.19221 0.88429 0.93735 0.94523 1.20777 1.01623 0.98903 0.89230 1.21252 0.90814 0.98133 1.01013 1.17319 0.90531 1.03348 0.84064 1.91500 1.72011 1.94866 1.53574 1.20750 1.00354 0.99885 0.91697 1.18845 0.98607 1.08569 0.95504 0.93345 0.94759 0.94130 0.94572 0.92263 0.92471 0.75359 0.88890 0.90008 0.88122 0.81181 0.80342 0.84065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.82 8.46 71.98 0.61 -4.21 16 2 C -0.11 -5.18 5.49 30.59 0.17 -5.01 16 3 C 0.28 13.67 2.12 44.25 0.09 13.77 16 4 H 0.03 1.51 7.55 -2.39 -0.02 1.49 16 5 C -0.56 -28.56 8.67 25.60 0.22 -28.34 16 6 H 0.06 3.17 7.73 -2.91 -0.02 3.15 16 7 C 0.03 1.37 5.20 84.65 0.44 1.81 16 8 N -0.91 -50.06 12.00 21.45 0.26 -49.81 16 9 Si 0.96 41.28 29.54 68.60 2.03 43.31 16 10 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 11 H -0.29 -12.18 7.11 99.48 0.71 -11.47 16 12 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 13 N -0.67 -27.00 5.08 -326.68 -1.66 -28.66 16 14 C 0.47 18.19 6.09 133.99 0.82 19.00 16 15 N -0.60 -24.13 6.50 -184.59 -1.20 -25.33 16 16 C 0.35 12.35 7.62 138.77 1.06 13.41 16 17 C -0.08 -2.07 10.28 71.24 0.73 -1.34 16 18 N -0.58 -19.19 10.32 -181.77 -1.88 -21.07 16 19 C 0.17 5.28 6.61 40.09 0.27 5.54 16 20 C -0.09 -1.96 10.01 22.28 0.22 -1.74 16 21 C -0.09 -1.79 9.92 22.10 0.22 -1.57 16 22 C 0.07 1.65 7.24 22.17 0.16 1.81 16 23 F -0.14 -3.41 17.25 44.97 0.78 -2.64 16 24 C -0.11 -3.02 9.50 22.29 0.21 -2.80 16 25 C -0.21 -6.93 5.75 -21.20 -0.12 -7.05 16 26 H 0.05 2.07 7.72 -2.39 -0.02 2.05 16 27 H 0.03 1.39 5.59 -2.39 -0.01 1.37 16 28 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 29 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 30 H 0.06 3.05 6.64 -2.39 -0.02 3.04 16 31 H 0.27 13.97 8.31 -92.71 -0.77 13.20 16 32 H 0.41 14.79 6.78 -92.71 -0.63 14.16 16 33 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 34 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 35 H 0.10 2.19 8.14 -2.39 -0.02 2.17 16 36 H 0.17 2.94 8.06 -2.91 -0.02 2.92 16 37 H 0.18 2.10 8.06 -2.91 -0.02 2.08 16 38 H 0.14 3.76 6.59 -2.91 -0.02 3.74 16 Total: -1.00 -60.69 318.71 3.89 -56.80 By element: Atomic # 1 Polarization: 23.66 SS G_CDS: 0.47 Total: 24.13 kcal Atomic # 6 Polarization: -1.83 SS G_CDS: 5.10 Total: 3.27 kcal Atomic # 7 Polarization: -120.39 SS G_CDS: -4.48 Total: -124.87 kcal Atomic # 9 Polarization: -3.41 SS G_CDS: 0.78 Total: -2.64 kcal Atomic # 14 Polarization: 41.28 SS G_CDS: 2.03 Total: 43.31 kcal Total: -60.69 3.89 -56.80 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161049645.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.813 kcal (2) G-P(sol) polarization free energy of solvation -60.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.796 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds