Wall clock time and date at job start Tue Mar 31 2020 06:22:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35618 * 117.00223 * 2 1 4 4 C 1.39163 * 120.50013 * 0.02562 * 3 2 1 5 5 C 1.38305 * 118.62935 * 179.97438 * 4 3 2 6 6 C 1.39937 * 119.59513 * 0.02562 * 5 4 3 7 7 N 1.38907 * 119.49601 * 179.97438 * 6 5 4 8 8 C 1.46494 * 119.99888 * 0.02562 * 7 6 5 9 9 C 1.53003 * 109.47277 * 179.97438 * 8 7 6 10 10 N 1.46494 * 109.47668 * 179.97438 * 9 8 7 11 11 C 1.35313 * 125.87300 * 124.99821 * 10 9 8 12 12 C 1.35348 * 106.17497 * 180.02562 * 11 10 9 13 13 N 1.33771 * 106.50103 * 0.02562 * 12 11 10 14 14 N 1.28637 * 108.88037 * 359.73427 * 13 12 11 15 15 N 1.31874 * 121.00911 * 359.97438 * 6 5 4 16 16 C 1.33818 * 121.47112 * 0.02562 * 15 6 5 17 17 C 1.40916 * 119.84934 * 179.97438 * 16 15 6 18 18 H 1.07996 * 119.99996 * 179.97438 * 17 16 15 19 19 C 1.40026 * 119.99653 * 359.97438 * 17 16 15 20 20 N 1.30775 * 120.00162 * 0.02562 * 19 17 16 21 21 Si 1.86807 * 119.99610 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.46884 * 90.00403 * 21 19 17 23 23 H 1.48497 * 109.46788 * 210.00108 * 21 19 17 24 24 H 1.48497 * 109.47063 * 330.00534 * 21 19 17 25 25 H 1.08998 * 109.47280 * 299.99580 * 1 2 3 26 26 H 1.09003 * 109.47282 * 60.00085 * 1 2 3 27 27 H 1.09001 * 109.46892 * 179.97438 * 1 2 3 28 28 H 1.08001 * 120.68118 * 359.95075 * 4 3 2 29 29 H 1.08002 * 120.19986 * 179.97438 * 5 4 3 30 30 H 0.97002 * 119.99713 * 180.02562 * 7 6 5 31 31 H 1.08998 * 109.47255 * 299.99327 * 8 7 6 32 32 H 1.09005 * 109.47559 * 59.99821 * 8 7 6 33 33 H 1.09003 * 109.46950 * 300.00051 * 9 8 7 34 34 H 1.08997 * 109.47043 * 59.99231 * 9 8 7 35 35 H 1.07995 * 126.91064 * 359.97438 * 11 10 9 36 36 H 1.08003 * 126.74946 * 179.97438 * 12 11 10 37 37 H 0.97004 * 119.99639 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0447 1.2083 0.0000 4 6 1.2970 2.3821 0.0005 5 6 1.9649 3.5932 0.0011 6 6 3.3641 3.6108 0.0005 7 7 4.0327 4.8284 0.0005 8 6 3.2733 6.0811 0.0016 9 6 4.2424 7.2651 0.0020 10 7 3.4830 8.5178 0.0025 11 6 3.6098 9.5215 0.9011 12 6 2.7251 10.4755 0.5281 13 7 2.1079 10.0146 -0.5656 14 7 2.5833 8.8547 -0.8542 15 7 4.0577 2.4892 0.0000 16 6 3.4544 1.2947 -0.0005 17 6 4.2291 0.1177 -0.0016 18 1 3.7448 -0.8476 -0.0016 19 6 5.6270 0.1996 -0.0027 20 7 6.2135 1.3685 -0.0022 21 14 6.6540 -1.3608 -0.0049 22 1 6.9251 -1.7729 -1.4056 23 1 7.9395 -1.1081 0.6943 24 1 5.9139 -2.4415 0.6947 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 0.2176 2.3478 0.0002 29 1 1.4098 4.5196 0.0011 30 1 5.0025 4.8491 -0.0003 31 1 2.6449 6.1258 -0.8879 32 1 2.6462 6.1251 0.8921 33 1 4.8705 7.2202 0.8917 34 1 4.8698 7.2213 -0.8882 35 1 4.2812 9.5544 1.7463 36 1 2.5509 11.4223 1.0178 37 1 7.1818 1.4252 -0.0026 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001161926531.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:26 Heat of formation + Delta-G solvation = 113.178769 kcal Electronic energy + Delta-G solvation = -21890.320812 eV Core-core repulsion = 18478.136537 eV Total energy + Delta-G solvation = -3412.184275 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.128 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -43.33248 -38.89346 -37.23918 -35.92128 -34.16733 -33.07704 -31.14725 -30.35175 -29.88856 -27.93563 -26.41750 -25.07452 -24.00340 -22.74551 -21.78317 -21.11433 -20.43503 -17.86801 -17.42587 -16.80660 -16.47830 -16.18089 -15.31254 -15.08675 -14.83546 -14.77879 -14.61773 -14.32703 -13.86046 -13.19428 -12.85636 -12.69299 -12.50432 -12.06383 -11.93245 -11.64018 -11.60772 -11.23962 -11.20343 -11.01662 -10.61940 -10.47962 -10.45772 -10.21832 -9.83995 -9.52103 -9.49720 -8.55499 -8.06402 -7.74318 -6.43231 -6.39638 -4.39919 1.48586 2.13686 2.48264 2.78208 3.07654 3.09748 3.14342 3.23723 3.95912 4.01099 4.22201 4.48593 4.58594 4.63616 4.76818 4.89052 4.96320 5.08357 5.47782 5.70767 5.79308 5.79781 5.86040 5.95997 5.96563 6.04661 6.07918 6.35805 6.40526 6.61836 6.72994 7.15725 7.21288 7.41088 7.64564 8.10846 8.22962 8.35638 8.40887 8.55702 8.74749 9.11669 10.10492 10.30083 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.018484 B = 0.003722 C = 0.003144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1514.481168 B = 7520.545523 C = 8904.978868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.312 6.312 3 C -0.072 4.072 4 C -0.114 4.114 5 C -0.344 4.344 6 C 0.393 3.607 7 N -0.738 5.738 8 C 0.135 3.865 9 C 0.105 3.895 10 N -0.284 5.284 11 C -0.049 4.049 12 C -0.056 4.056 13 N -0.276 5.276 14 N -0.079 5.079 15 N -0.511 5.511 16 C 0.289 3.711 17 C -0.411 4.411 18 H 0.092 0.908 19 C 0.068 3.932 20 N -0.715 5.715 21 Si 0.909 3.091 22 H -0.269 1.269 23 H -0.277 1.277 24 H -0.261 1.261 25 H 0.037 0.963 26 H 0.037 0.963 27 H 0.080 0.920 28 H 0.100 0.900 29 H 0.092 0.908 30 H 0.397 0.603 31 H 0.071 0.929 32 H 0.058 0.942 33 H 0.113 0.887 34 H 0.107 0.893 35 H 0.191 0.809 36 H 0.189 0.811 37 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.694 9.999 3.212 10.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.225 6.225 3 C -0.120 4.120 4 C -0.139 4.139 5 C -0.370 4.370 6 C 0.156 3.844 7 N -0.377 5.377 8 C 0.008 3.992 9 C -0.017 4.017 10 N -0.078 5.078 11 C -0.200 4.200 12 C -0.213 4.213 13 N -0.141 5.141 14 N -0.059 5.059 15 N -0.233 5.233 16 C 0.160 3.840 17 C -0.443 4.443 18 H 0.110 0.890 19 C -0.157 4.157 20 N -0.337 5.337 21 Si 0.733 3.267 22 H -0.194 1.194 23 H -0.203 1.203 24 H -0.184 1.184 25 H 0.055 0.945 26 H 0.056 0.944 27 H 0.099 0.901 28 H 0.118 0.882 29 H 0.110 0.890 30 H 0.232 0.768 31 H 0.089 0.911 32 H 0.077 0.923 33 H 0.131 0.869 34 H 0.125 0.875 35 H 0.208 0.792 36 H 0.206 0.794 37 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -0.453 9.593 1.945 9.799 hybrid contribution 0.277 -0.057 1.095 1.131 sum -0.177 9.536 3.040 10.011 Atomic orbital electron populations 1.22697 0.82089 1.01577 0.99711 1.85918 1.17922 1.27826 1.90832 1.20045 0.93436 0.83154 1.15370 1.20681 0.97391 0.92307 1.03479 1.20357 0.92754 0.96449 1.27466 1.18332 0.87596 0.86307 0.92202 1.43699 1.07686 1.01041 1.85297 1.21121 0.93341 0.82145 1.02604 1.22296 0.93909 0.79364 1.06150 1.47383 1.26754 1.15204 1.18445 1.23733 1.06206 0.90251 0.99817 1.23620 0.98142 1.02152 0.97432 1.75140 1.21827 1.03134 1.14039 1.78379 1.03049 1.10013 1.14460 1.68335 1.34726 0.94902 1.25385 1.17740 0.85020 0.90944 0.90265 1.19551 0.90545 0.93145 1.41077 0.89023 1.26079 0.98753 0.97214 0.93655 1.70157 1.10191 1.24526 1.28827 0.86305 0.79000 0.82181 0.79229 1.19435 1.20259 1.18439 0.94465 0.94429 0.90115 0.88158 0.89026 0.76768 0.91124 0.92338 0.86924 0.87473 0.79242 0.79426 0.91869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.62 9.83 101.05 0.99 1.61 16 2 O -0.31 -7.25 9.61 -18.55 -0.18 -7.43 16 3 C -0.07 -1.83 6.74 -38.10 -0.26 -2.09 16 4 C -0.11 -2.64 9.12 -39.21 -0.36 -2.99 16 5 C -0.34 -7.85 9.33 -38.92 -0.36 -8.21 16 6 C 0.39 9.21 7.65 -155.26 -1.19 8.02 16 7 N -0.74 -13.41 5.72 -60.35 -0.35 -13.76 16 8 C 0.14 1.94 5.01 -4.04 -0.02 1.92 16 9 C 0.10 1.08 6.57 -4.04 -0.03 1.05 16 10 N -0.28 -3.32 3.44 -61.27 -0.21 -3.53 16 11 C -0.05 -0.45 11.57 -17.05 -0.20 -0.65 16 12 C -0.06 -0.58 12.05 -17.74 -0.21 -0.79 16 13 N -0.28 -3.98 12.41 30.24 0.38 -3.61 16 14 N -0.08 -1.17 12.92 60.35 0.78 -0.39 16 15 N -0.51 -13.61 7.88 -10.20 -0.08 -13.69 16 16 C 0.29 7.94 6.56 -84.85 -0.56 7.38 16 17 C -0.41 -11.09 8.94 -37.90 -0.34 -11.43 16 18 H 0.09 2.41 7.31 -52.49 -0.38 2.03 16 19 C 0.07 1.70 5.50 -17.33 -0.10 1.61 16 20 N -0.72 -18.25 11.45 55.55 0.64 -17.61 16 21 Si 0.91 18.47 29.56 -169.99 -5.02 13.44 16 22 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 23 H -0.28 -5.47 7.11 56.52 0.40 -5.07 16 24 H -0.26 -5.27 7.11 56.52 0.40 -4.87 16 25 H 0.04 0.60 7.69 -51.93 -0.40 0.20 16 26 H 0.04 0.61 7.69 -51.93 -0.40 0.21 16 27 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 28 H 0.10 2.03 6.43 -52.49 -0.34 1.69 16 29 H 0.09 1.90 6.67 -52.49 -0.35 1.55 16 30 H 0.40 6.83 8.59 -40.82 -0.35 6.48 16 31 H 0.07 1.13 7.89 -51.93 -0.41 0.72 16 32 H 0.06 0.88 7.92 -51.93 -0.41 0.47 16 33 H 0.11 0.85 8.07 -51.93 -0.42 0.43 16 34 H 0.11 1.02 8.14 -51.93 -0.42 0.60 16 35 H 0.19 0.94 8.06 -52.49 -0.42 0.52 16 36 H 0.19 1.24 8.06 -52.48 -0.42 0.81 16 37 H 0.27 6.22 8.30 -40.82 -0.34 5.89 16 LS Contribution 322.12 15.07 4.85 4.85 Total: -1.00 -32.81 322.12 -6.10 -38.91 By element: Atomic # 1 Polarization: 11.66 SS G_CDS: -4.29 Total: 7.37 kcal Atomic # 6 Polarization: -1.94 SS G_CDS: -2.62 Total: -4.56 kcal Atomic # 7 Polarization: -53.75 SS G_CDS: 1.15 Total: -52.59 kcal Atomic # 8 Polarization: -7.25 SS G_CDS: -0.18 Total: -7.43 kcal Atomic # 14 Polarization: 18.47 SS G_CDS: -5.02 Total: 13.44 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -32.81 -6.10 -38.91 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161926531.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.092 kcal (2) G-P(sol) polarization free energy of solvation -32.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.914 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds