Wall clock time and date at job start Tue Mar 31 2020 06:22:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35618 * 117.00223 * 2 1 4 4 C 1.39163 * 120.50013 * 0.02562 * 3 2 1 5 5 C 1.38305 * 118.62935 * 179.97438 * 4 3 2 6 6 C 1.39937 * 119.59513 * 0.02562 * 5 4 3 7 7 N 1.38907 * 119.49601 * 179.97438 * 6 5 4 8 8 C 1.46494 * 119.99888 * 0.02562 * 7 6 5 9 9 C 1.53003 * 109.47277 * 179.97438 * 8 7 6 10 10 N 1.46494 * 109.47668 * 179.97438 * 9 8 7 11 11 C 1.35313 * 125.87300 * 124.99821 * 10 9 8 12 12 C 1.35348 * 106.17497 * 180.02562 * 11 10 9 13 13 N 1.33771 * 106.50103 * 0.02562 * 12 11 10 14 14 N 1.28637 * 108.88037 * 359.73427 * 13 12 11 15 15 N 1.31874 * 121.00911 * 359.97438 * 6 5 4 16 16 C 1.33818 * 121.47112 * 0.02562 * 15 6 5 17 17 C 1.40916 * 119.84934 * 179.97438 * 16 15 6 18 18 H 1.07996 * 119.99996 * 179.97438 * 17 16 15 19 19 C 1.40026 * 119.99653 * 359.97438 * 17 16 15 20 20 N 1.30775 * 120.00162 * 0.02562 * 19 17 16 21 21 Si 1.86807 * 119.99610 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.46884 * 90.00403 * 21 19 17 23 23 H 1.48497 * 109.46788 * 210.00108 * 21 19 17 24 24 H 1.48497 * 109.47063 * 330.00534 * 21 19 17 25 25 H 1.08998 * 109.47280 * 299.99580 * 1 2 3 26 26 H 1.09003 * 109.47282 * 60.00085 * 1 2 3 27 27 H 1.09001 * 109.46892 * 179.97438 * 1 2 3 28 28 H 1.08001 * 120.68118 * 359.95075 * 4 3 2 29 29 H 1.08002 * 120.19986 * 179.97438 * 5 4 3 30 30 H 0.97002 * 119.99713 * 180.02562 * 7 6 5 31 31 H 1.08998 * 109.47255 * 299.99327 * 8 7 6 32 32 H 1.09005 * 109.47559 * 59.99821 * 8 7 6 33 33 H 1.09003 * 109.46950 * 300.00051 * 9 8 7 34 34 H 1.08997 * 109.47043 * 59.99231 * 9 8 7 35 35 H 1.07995 * 126.91064 * 359.97438 * 11 10 9 36 36 H 1.08003 * 126.74946 * 179.97438 * 12 11 10 37 37 H 0.97004 * 119.99639 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0447 1.2083 0.0000 4 6 1.2970 2.3821 0.0005 5 6 1.9649 3.5932 0.0011 6 6 3.3641 3.6108 0.0005 7 7 4.0327 4.8284 0.0005 8 6 3.2733 6.0811 0.0016 9 6 4.2424 7.2651 0.0020 10 7 3.4830 8.5178 0.0025 11 6 3.6098 9.5215 0.9011 12 6 2.7251 10.4755 0.5281 13 7 2.1079 10.0146 -0.5656 14 7 2.5833 8.8547 -0.8542 15 7 4.0577 2.4892 0.0000 16 6 3.4544 1.2947 -0.0005 17 6 4.2291 0.1177 -0.0016 18 1 3.7448 -0.8476 -0.0016 19 6 5.6270 0.1996 -0.0027 20 7 6.2135 1.3685 -0.0022 21 14 6.6540 -1.3608 -0.0049 22 1 6.9251 -1.7729 -1.4056 23 1 7.9395 -1.1081 0.6943 24 1 5.9139 -2.4415 0.6947 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 0.2176 2.3478 0.0002 29 1 1.4098 4.5196 0.0011 30 1 5.0025 4.8491 -0.0003 31 1 2.6449 6.1258 -0.8879 32 1 2.6462 6.1251 0.8921 33 1 4.8705 7.2202 0.8917 34 1 4.8698 7.2213 -0.8882 35 1 4.2812 9.5544 1.7463 36 1 2.5509 11.4223 1.0178 37 1 7.1818 1.4252 -0.0026 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001161926531.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:25 Heat of formation + Delta-G solvation = 89.946739 kcal Electronic energy + Delta-G solvation = -21891.328228 eV Core-core repulsion = 18478.136537 eV Total energy + Delta-G solvation = -3413.191691 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.128 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -44.18760 -40.66397 -38.81545 -37.27168 -35.67580 -34.61393 -32.20024 -31.96606 -31.34169 -29.33482 -28.01069 -26.80914 -25.19603 -23.58303 -23.38228 -22.30719 -22.07015 -19.37236 -18.81755 -18.30404 -17.95584 -17.37077 -16.71983 -16.48054 -16.29522 -16.13365 -15.69446 -15.67545 -14.98640 -14.78353 -14.40325 -14.17759 -14.10354 -13.32325 -13.29720 -13.15997 -12.89883 -12.81601 -12.54415 -12.49509 -12.06905 -12.02463 -11.86043 -11.58857 -11.28071 -11.14203 -10.33004 -10.19719 -9.93188 -9.61926 -8.27298 -8.14936 -6.33420 0.66161 0.96784 1.23842 1.29474 1.44253 1.55935 1.59433 1.65175 2.27702 2.63209 2.90220 3.02345 3.39430 3.65500 3.76453 3.94956 4.12009 4.24576 4.25905 4.34009 4.43170 4.50141 4.53497 4.57864 4.65055 4.74298 4.84979 4.89313 4.93072 5.29306 5.32457 5.45825 5.60405 5.68268 5.81855 6.26584 6.37773 6.65384 6.81203 6.96752 7.30508 7.53198 8.24714 8.48030 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.018484 B = 0.003722 C = 0.003144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1514.481168 B = 7520.545523 C = 8904.978868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.336 6.336 3 C -0.096 4.096 4 C -0.114 4.114 5 C -0.347 4.347 6 C 0.378 3.622 7 N -0.727 5.727 8 C 0.140 3.860 9 C 0.114 3.886 10 N -0.287 5.287 11 C -0.030 4.030 12 C -0.065 4.065 13 N -0.313 5.313 14 N -0.130 5.130 15 N -0.537 5.537 16 C 0.253 3.747 17 C -0.448 4.448 18 H 0.083 0.917 19 C 0.027 3.973 20 N -0.744 5.744 21 Si 0.985 3.015 22 H -0.265 1.265 23 H -0.264 1.264 24 H -0.261 1.261 25 H 0.047 0.953 26 H 0.046 0.954 27 H 0.112 0.888 28 H 0.128 0.872 29 H 0.111 0.889 30 H 0.402 0.598 31 H 0.051 0.949 32 H 0.055 0.945 33 H 0.150 0.850 34 H 0.115 0.885 35 H 0.238 0.762 36 H 0.221 0.779 37 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.030 10.849 4.348 11.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.251 6.251 3 C -0.144 4.144 4 C -0.139 4.139 5 C -0.374 4.374 6 C 0.140 3.860 7 N -0.365 5.365 8 C 0.014 3.986 9 C -0.007 4.007 10 N -0.081 5.081 11 C -0.181 4.181 12 C -0.223 4.223 13 N -0.178 5.178 14 N -0.109 5.109 15 N -0.260 5.260 16 C 0.125 3.875 17 C -0.480 4.480 18 H 0.101 0.899 19 C -0.195 4.195 20 N -0.366 5.366 21 Si 0.805 3.195 22 H -0.189 1.189 23 H -0.188 1.188 24 H -0.185 1.185 25 H 0.065 0.935 26 H 0.064 0.936 27 H 0.130 0.870 28 H 0.146 0.854 29 H 0.129 0.871 30 H 0.238 0.762 31 H 0.070 0.930 32 H 0.073 0.927 33 H 0.168 0.832 34 H 0.133 0.867 35 H 0.254 0.746 36 H 0.238 0.762 37 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 0.246 10.488 3.064 10.929 hybrid contribution -0.068 -0.178 0.789 0.811 sum 0.179 10.309 3.853 11.007 Atomic orbital electron populations 1.23025 0.79132 1.04050 1.00509 1.85854 1.21012 1.27228 1.90960 1.20103 0.93329 0.84472 1.16447 1.21018 0.98828 0.91750 1.02260 1.20665 0.92935 0.97229 1.26522 1.18727 0.88371 0.87229 0.91680 1.43713 1.08085 1.00682 1.84049 1.21117 0.93968 0.82117 1.01438 1.22279 0.92683 0.77311 1.08462 1.47496 1.26322 1.15787 1.18525 1.24519 1.05490 0.88548 0.99551 1.24306 0.97824 1.03691 0.96489 1.75075 1.23140 1.03563 1.16044 1.78351 1.05221 1.10894 1.16477 1.68306 1.35785 0.95543 1.26407 1.18183 0.86586 0.91676 0.91074 1.19744 0.91995 0.92917 1.43347 0.89852 1.26884 0.99125 1.00720 0.92789 1.70206 1.10963 1.26459 1.28964 0.85178 0.77352 0.77634 0.79337 1.18947 1.18785 1.18522 0.93473 0.93574 0.86959 0.85392 0.87136 0.76184 0.93036 0.92653 0.83235 0.86660 0.74616 0.76242 0.91003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.94 9.83 113.37 1.11 2.06 16 2 O -0.34 -15.87 9.61 -89.30 -0.86 -16.73 16 3 C -0.10 -4.95 6.74 23.23 0.16 -4.79 16 4 C -0.11 -5.26 9.12 22.51 0.21 -5.06 16 5 C -0.35 -15.81 9.33 22.70 0.21 -15.60 16 6 C 0.38 17.91 7.65 133.45 1.02 18.93 16 7 N -0.73 -26.05 5.72 -344.85 -1.97 -28.03 16 8 C 0.14 3.88 5.01 86.38 0.43 4.31 16 9 C 0.11 2.08 6.57 86.38 0.57 2.64 16 10 N -0.29 -6.12 3.44 -347.75 -1.20 -7.32 16 11 C -0.03 -0.44 11.57 83.49 0.97 0.52 16 12 C -0.07 -1.20 12.05 83.73 1.01 -0.19 16 13 N -0.31 -8.86 12.41 -58.26 -0.72 -9.58 16 14 N -0.13 -3.82 12.92 37.02 0.48 -3.34 16 15 N -0.54 -29.33 7.88 -186.18 -1.47 -30.80 16 16 C 0.25 14.40 6.56 40.23 0.26 14.67 16 17 C -0.45 -25.04 8.94 23.36 0.21 -24.83 16 18 H 0.08 4.59 7.31 -2.91 -0.02 4.57 16 19 C 0.03 1.38 5.50 85.28 0.47 1.84 16 20 N -0.74 -38.53 11.45 21.84 0.25 -38.27 16 21 Si 0.98 38.23 29.56 68.60 2.03 40.26 16 22 H -0.26 -9.99 7.11 99.48 0.71 -9.28 16 23 H -0.26 -9.53 7.11 99.48 0.71 -8.83 16 24 H -0.26 -10.05 7.11 99.48 0.71 -9.34 16 25 H 0.05 1.46 7.69 -2.39 -0.02 1.44 16 26 H 0.05 1.44 7.69 -2.39 -0.02 1.43 16 27 H 0.11 2.97 8.14 -2.39 -0.02 2.95 16 28 H 0.13 5.01 6.43 -2.91 -0.02 4.99 16 29 H 0.11 4.51 6.67 -2.91 -0.02 4.49 16 30 H 0.40 13.54 8.59 -92.71 -0.80 12.75 16 31 H 0.05 1.65 7.89 -2.39 -0.02 1.63 16 32 H 0.06 1.59 7.92 -2.38 -0.02 1.57 16 33 H 0.15 1.65 8.07 -2.39 -0.02 1.63 16 34 H 0.12 1.96 8.14 -2.39 -0.02 1.94 16 35 H 0.24 1.02 8.06 -2.91 -0.02 1.00 16 36 H 0.22 2.21 8.06 -2.91 -0.02 2.18 16 37 H 0.28 12.90 8.30 -92.71 -0.77 12.13 16 Total: -1.00 -75.51 322.12 3.48 -72.03 By element: Atomic # 1 Polarization: 26.95 SS G_CDS: 0.32 Total: 27.27 kcal Atomic # 6 Polarization: -12.12 SS G_CDS: 6.63 Total: -5.49 kcal Atomic # 7 Polarization: -112.71 SS G_CDS: -4.63 Total: -117.34 kcal Atomic # 8 Polarization: -15.87 SS G_CDS: -0.86 Total: -16.73 kcal Atomic # 14 Polarization: 38.23 SS G_CDS: 2.03 Total: 40.26 kcal Total: -75.51 3.48 -72.03 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161926531.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.978 kcal (2) G-P(sol) polarization free energy of solvation -75.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.031 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds