Wall clock time and date at job start Tue Mar 31 2020 06:31:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30500 * 125.64957 * 2 1 4 4 C 1.34120 * 109.25748 * 180.02562 * 3 2 1 5 5 C 1.34672 * 108.02085 * 359.73232 * 4 3 2 6 6 N 1.35041 * 125.65212 * 180.02562 * 2 1 3 7 7 C 1.46500 * 126.39427 * 359.96174 * 6 2 1 8 8 C 1.53001 * 109.46947 * 85.00108 * 7 6 2 9 9 N 1.46495 * 109.47406 * 179.97438 * 8 7 6 10 10 C 1.39892 * 120.00505 * 179.97438 * 9 8 7 11 11 C 1.39086 * 119.95788 * 0.02562 * 10 9 8 12 12 C 1.38623 * 120.47074 * 179.97438 * 11 10 9 13 13 C 1.37581 * 120.37886 * 0.02562 * 12 11 10 14 14 C 1.40780 * 119.91486 * 0.02562 * 13 12 11 15 15 C 1.41318 * 120.23251 * 179.97438 * 14 13 12 16 16 H 1.07997 * 120.00045 * 155.39257 * 15 14 13 17 17 C 1.39921 * 119.99879 * 335.11458 * 15 14 13 18 18 N 1.30857 * 120.00100 * 342.18554 * 17 15 14 19 19 Si 1.86803 * 120.00045 * 162.18144 * 17 15 14 20 20 H 1.48494 * 109.46914 * 60.00316 * 19 17 15 21 21 H 1.48503 * 109.46786 * 180.02562 * 19 17 15 22 22 H 1.48494 * 109.47036 * 299.99928 * 19 17 15 23 23 C 1.38594 * 119.96281 * 180.26103 * 10 9 8 24 24 F 1.35096 * 120.19064 * 0.02562 * 23 10 9 25 25 H 1.09010 * 109.46987 * 269.96103 * 1 2 3 26 26 H 1.09005 * 109.47336 * 29.95527 * 1 2 3 27 27 H 1.08993 * 109.47546 * 149.96071 * 1 2 3 28 28 H 1.08007 * 125.99213 * 180.02562 * 4 3 2 29 29 H 1.08001 * 126.59498 * 180.28051 * 5 4 3 30 30 H 1.08995 * 109.47298 * 325.00013 * 7 6 2 31 31 H 1.08996 * 109.47164 * 204.99916 * 7 6 2 32 32 H 1.09005 * 109.47087 * 59.99920 * 8 7 6 33 33 H 1.09003 * 109.47354 * 300.00035 * 8 7 6 34 34 H 0.97004 * 120.00185 * 0.02562 * 9 8 7 35 35 H 1.08004 * 119.76571 * 359.97438 * 11 10 9 36 36 H 1.07995 * 119.81418 * 180.02562 * 12 11 10 37 37 H 1.08006 * 120.04139 * 179.97438 * 13 12 11 38 38 H 0.96997 * 120.00066 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2676 1.0604 0.0000 4 6 3.5543 0.6819 -0.0006 5 6 3.5926 -0.6642 0.0051 6 7 2.2941 -1.0973 -0.0005 7 6 1.8425 -2.4910 -0.0003 8 6 1.5650 -2.9373 -1.4372 9 7 1.1140 -4.3311 -1.4372 10 6 0.7969 -4.9637 -2.6440 11 6 0.9106 -4.2688 -3.8434 12 6 0.5997 -4.8855 -5.0453 13 6 0.1739 -6.1936 -5.0665 14 6 0.0520 -6.9118 -3.8618 15 6 -0.3852 -8.2556 -3.8757 16 1 -0.1152 -8.9197 -3.0680 17 6 -1.1729 -8.7241 -4.9330 18 7 -1.7927 -7.8757 -5.7131 19 14 -1.3395 -10.5606 -5.2312 20 1 -1.9301 -11.2053 -4.0309 21 1 -2.2212 -10.7938 -6.4032 22 1 0.0005 -11.1425 -5.4969 23 6 0.3651 -6.2807 -2.6425 24 9 0.2488 -6.9562 -1.4783 25 1 -0.3633 -0.0007 1.0278 26 1 -0.3634 0.8904 -0.5132 27 1 -0.3634 -0.8895 -0.5144 28 1 4.4098 1.3412 -0.0003 29 1 4.4776 -1.2831 0.0104 30 1 0.9301 -2.5772 0.5896 31 1 2.6168 -3.1237 0.4335 32 1 2.4775 -2.8510 -2.0272 33 1 0.7907 -2.3045 -1.8711 34 1 1.0345 -4.8152 -0.6004 35 1 1.2435 -3.2413 -3.8383 36 1 0.6922 -4.3360 -5.9704 37 1 -0.0673 -6.6685 -6.0060 38 1 -2.3384 -8.2005 -6.4463 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163923571.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:53 Heat of formation + Delta-G solvation = 31.598521 kcal Electronic energy + Delta-G solvation = -21826.743323 eV Core-core repulsion = 18391.101502 eV Total energy + Delta-G solvation = -3435.641821 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.129 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -47.18424 -42.20497 -37.89611 -36.03711 -34.18170 -32.96658 -31.84690 -29.67282 -29.47844 -27.10635 -26.47965 -25.43331 -23.39328 -21.49195 -20.86148 -20.54995 -19.78303 -17.73188 -16.95905 -16.39851 -15.96017 -15.37548 -15.30816 -15.09658 -14.70001 -14.29862 -13.98373 -13.85953 -13.53920 -13.23400 -13.09077 -12.99911 -12.79408 -12.44457 -12.19707 -12.14916 -11.87458 -11.59153 -11.18362 -11.08438 -10.87078 -10.56371 -10.08216 -9.95826 -9.74173 -9.62742 -9.42831 -8.97111 -8.45115 -7.47289 -6.89767 -6.43368 -4.47869 1.90995 2.53413 2.66320 2.91666 3.01858 3.04913 3.05104 3.16698 3.85163 4.00546 4.38886 4.41690 4.51739 4.63507 4.73254 4.99871 5.17230 5.29369 5.37261 5.48360 5.59465 5.64029 5.72498 5.80437 5.88958 6.13061 6.19917 6.56477 6.65336 6.75402 6.87488 7.05051 7.09124 7.13307 7.47789 7.63282 7.92879 8.00331 8.01608 8.18579 8.28980 8.54378 8.70994 8.85960 10.06103 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.036987 B = 0.003065 C = 0.002994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 756.834651 B = 9132.918548 C = 9349.773534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.208 3.792 3 N -0.495 5.495 4 C -0.031 4.031 5 C -0.057 4.057 6 N -0.450 5.450 7 C 0.093 3.907 8 C 0.127 3.873 9 N -0.759 5.759 10 C 0.203 3.797 11 C -0.285 4.285 12 C -0.077 4.077 13 C -0.180 4.180 14 C 0.118 3.882 15 C -0.453 4.453 16 H 0.082 0.918 17 C 0.078 3.922 18 N -0.784 5.784 19 Si 0.912 3.088 20 H -0.264 1.264 21 H -0.277 1.277 22 H -0.262 1.262 23 C -0.095 4.095 24 F -0.167 7.167 25 H 0.079 0.921 26 H 0.090 0.910 27 H 0.077 0.923 28 H 0.169 0.831 29 H 0.174 0.826 30 H 0.097 0.903 31 H 0.098 0.902 32 H 0.059 0.941 33 H 0.059 0.941 34 H 0.394 0.606 35 H 0.093 0.907 36 H 0.093 0.907 37 H 0.122 0.878 38 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.105 8.607 7.586 12.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.054 4.054 3 N -0.214 5.214 4 C -0.178 4.178 5 C -0.189 4.189 6 N -0.134 5.134 7 C -0.030 4.030 8 C 0.001 3.999 9 N -0.395 5.395 10 C 0.104 3.896 11 C -0.308 4.308 12 C -0.097 4.097 13 C -0.201 4.201 14 C 0.114 3.886 15 C -0.482 4.482 16 H 0.100 0.900 17 C -0.141 4.141 18 N -0.408 5.408 19 Si 0.736 3.264 20 H -0.188 1.188 21 H -0.202 1.202 22 H -0.186 1.186 23 C -0.119 4.119 24 F -0.147 7.147 25 H 0.098 0.902 26 H 0.109 0.891 27 H 0.095 0.905 28 H 0.186 0.814 29 H 0.191 0.809 30 H 0.115 0.885 31 H 0.116 0.884 32 H 0.077 0.923 33 H 0.078 0.922 34 H 0.227 0.773 35 H 0.111 0.889 36 H 0.112 0.888 37 H 0.140 0.860 38 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 4.651 9.437 7.347 12.832 hybrid contribution 0.270 -1.905 0.289 1.946 sum 4.920 7.532 7.637 11.801 Atomic orbital electron populations 1.20240 0.84954 1.04424 1.03470 1.23347 0.95775 0.81295 1.05008 1.70245 1.02300 1.28290 1.20594 1.22264 0.94789 0.92750 1.08044 1.22736 0.87050 0.96919 1.12229 1.45283 1.06612 1.07051 1.54424 1.22018 1.02454 0.79489 0.99049 1.21285 0.99892 0.84701 0.94047 1.44033 1.77751 1.10933 1.06758 1.17337 0.96455 0.90163 0.85619 1.19724 1.20672 0.99382 0.91060 1.20480 0.98425 0.95216 0.95532 1.21043 1.06886 0.94134 0.98032 1.17395 0.88865 0.93172 0.89151 1.19488 1.27190 0.95547 1.05930 0.90017 1.25925 0.93266 1.00505 0.94454 1.69837 1.20290 1.36834 1.13866 0.86292 0.79322 0.82037 0.78717 1.18849 1.20178 1.18645 1.17251 1.23192 0.89804 0.81695 1.91203 1.95741 1.80612 1.47107 0.90246 0.89101 0.90450 0.81395 0.80916 0.88453 0.88386 0.92284 0.92238 0.77264 0.88855 0.88847 0.85981 0.90544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.69 10.04 36.01 0.36 -0.33 16 2 C 0.21 2.60 7.90 -155.42 -1.23 1.37 16 3 N -0.49 -6.99 11.25 -10.82 -0.12 -7.11 16 4 C -0.03 -0.37 11.87 -17.82 -0.21 -0.58 16 5 C -0.06 -0.62 11.58 -16.56 -0.19 -0.81 16 6 N -0.45 -5.14 2.75 -113.91 -0.31 -5.45 16 7 C 0.09 0.94 5.79 -4.04 -0.02 0.92 16 8 C 0.13 1.70 5.23 -4.04 -0.02 1.68 16 9 N -0.76 -12.70 5.74 -58.61 -0.34 -13.04 16 10 C 0.20 4.41 6.65 -83.73 -0.56 3.85 16 11 C -0.29 -6.13 9.32 -39.13 -0.36 -6.49 16 12 C -0.08 -1.75 10.01 -39.68 -0.40 -2.14 16 13 C -0.18 -4.55 8.69 -38.86 -0.34 -4.89 16 14 C 0.12 3.12 5.57 -106.79 -0.60 2.53 16 15 C -0.45 -12.00 8.78 -37.78 -0.33 -12.33 16 16 H 0.08 2.14 7.74 -52.49 -0.41 1.73 16 17 C 0.08 1.91 5.14 -17.34 -0.09 1.83 16 18 N -0.78 -19.66 10.98 55.55 0.61 -19.05 16 19 Si 0.91 18.30 29.60 -169.99 -5.03 13.26 16 20 H -0.26 -5.27 7.11 56.52 0.40 -4.87 16 21 H -0.28 -5.35 7.11 56.52 0.40 -4.95 16 22 H -0.26 -5.21 7.11 56.52 0.40 -4.81 16 23 C -0.10 -2.36 7.31 -38.47 -0.28 -2.64 16 24 F -0.17 -4.05 16.08 2.25 0.04 -4.01 16 25 H 0.08 0.64 8.14 -51.92 -0.42 0.21 16 26 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 27 H 0.08 0.71 7.36 -51.93 -0.38 0.33 16 28 H 0.17 1.57 8.06 -52.48 -0.42 1.14 16 29 H 0.17 1.39 8.06 -52.49 -0.42 0.97 16 30 H 0.10 0.87 7.92 -51.93 -0.41 0.46 16 31 H 0.10 0.86 8.13 -51.93 -0.42 0.44 16 32 H 0.06 0.84 7.94 -51.93 -0.41 0.43 16 33 H 0.06 0.84 7.47 -51.93 -0.39 0.46 16 34 H 0.39 6.09 7.95 -40.82 -0.32 5.77 16 35 H 0.09 1.80 6.70 -52.48 -0.35 1.45 16 36 H 0.09 1.86 8.06 -52.49 -0.42 1.44 16 37 H 0.12 3.14 6.18 -52.48 -0.32 2.82 16 38 H 0.28 6.44 8.30 -40.82 -0.34 6.10 16 LS Contribution 327.75 15.07 4.94 4.94 Total: -1.00 -29.82 327.75 -9.16 -38.97 By element: Atomic # 1 Polarization: 14.20 SS G_CDS: -4.67 Total: 9.53 kcal Atomic # 6 Polarization: -13.77 SS G_CDS: -4.27 Total: -18.04 kcal Atomic # 7 Polarization: -44.49 SS G_CDS: -0.16 Total: -44.65 kcal Atomic # 9 Polarization: -4.05 SS G_CDS: 0.04 Total: -4.01 kcal Atomic # 14 Polarization: 18.30 SS G_CDS: -5.03 Total: 13.26 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -29.82 -9.16 -38.97 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163923571.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.570 kcal (2) G-P(sol) polarization free energy of solvation -29.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.972 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds