Wall clock time and date at job start Tue Mar 31 2020 06:31:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30500 * 125.64957 * 2 1 4 4 C 1.34120 * 109.25748 * 180.02562 * 3 2 1 5 5 C 1.34672 * 108.02085 * 359.73232 * 4 3 2 6 6 N 1.35041 * 125.65212 * 180.02562 * 2 1 3 7 7 C 1.46500 * 126.39427 * 359.96174 * 6 2 1 8 8 C 1.53001 * 109.46947 * 85.00108 * 7 6 2 9 9 N 1.46495 * 109.47406 * 179.97438 * 8 7 6 10 10 C 1.39892 * 120.00505 * 179.97438 * 9 8 7 11 11 C 1.39086 * 119.95788 * 0.02562 * 10 9 8 12 12 C 1.38623 * 120.47074 * 179.97438 * 11 10 9 13 13 C 1.37581 * 120.37886 * 0.02562 * 12 11 10 14 14 C 1.40780 * 119.91486 * 0.02562 * 13 12 11 15 15 C 1.41318 * 120.23251 * 179.97438 * 14 13 12 16 16 H 1.07997 * 120.00045 * 155.39257 * 15 14 13 17 17 C 1.39921 * 119.99879 * 335.11458 * 15 14 13 18 18 N 1.30857 * 120.00100 * 342.18554 * 17 15 14 19 19 Si 1.86803 * 120.00045 * 162.18144 * 17 15 14 20 20 H 1.48494 * 109.46914 * 60.00316 * 19 17 15 21 21 H 1.48503 * 109.46786 * 180.02562 * 19 17 15 22 22 H 1.48494 * 109.47036 * 299.99928 * 19 17 15 23 23 C 1.38594 * 119.96281 * 180.26103 * 10 9 8 24 24 F 1.35096 * 120.19064 * 0.02562 * 23 10 9 25 25 H 1.09010 * 109.46987 * 269.96103 * 1 2 3 26 26 H 1.09005 * 109.47336 * 29.95527 * 1 2 3 27 27 H 1.08993 * 109.47546 * 149.96071 * 1 2 3 28 28 H 1.08007 * 125.99213 * 180.02562 * 4 3 2 29 29 H 1.08001 * 126.59498 * 180.28051 * 5 4 3 30 30 H 1.08995 * 109.47298 * 325.00013 * 7 6 2 31 31 H 1.08996 * 109.47164 * 204.99916 * 7 6 2 32 32 H 1.09005 * 109.47087 * 59.99920 * 8 7 6 33 33 H 1.09003 * 109.47354 * 300.00035 * 8 7 6 34 34 H 0.97004 * 120.00185 * 0.02562 * 9 8 7 35 35 H 1.08004 * 119.76571 * 359.97438 * 11 10 9 36 36 H 1.07995 * 119.81418 * 180.02562 * 12 11 10 37 37 H 1.08006 * 120.04139 * 179.97438 * 13 12 11 38 38 H 0.96997 * 120.00066 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2676 1.0604 0.0000 4 6 3.5543 0.6819 -0.0006 5 6 3.5926 -0.6642 0.0051 6 7 2.2941 -1.0973 -0.0005 7 6 1.8425 -2.4910 -0.0003 8 6 1.5650 -2.9373 -1.4372 9 7 1.1140 -4.3311 -1.4372 10 6 0.7969 -4.9637 -2.6440 11 6 0.9106 -4.2688 -3.8434 12 6 0.5997 -4.8855 -5.0453 13 6 0.1739 -6.1936 -5.0665 14 6 0.0520 -6.9118 -3.8618 15 6 -0.3852 -8.2556 -3.8757 16 1 -0.1152 -8.9197 -3.0680 17 6 -1.1729 -8.7241 -4.9330 18 7 -1.7927 -7.8757 -5.7131 19 14 -1.3395 -10.5606 -5.2312 20 1 -1.9301 -11.2053 -4.0309 21 1 -2.2212 -10.7938 -6.4032 22 1 0.0005 -11.1425 -5.4969 23 6 0.3651 -6.2807 -2.6425 24 9 0.2488 -6.9562 -1.4783 25 1 -0.3633 -0.0007 1.0278 26 1 -0.3634 0.8904 -0.5132 27 1 -0.3634 -0.8895 -0.5144 28 1 4.4098 1.3412 -0.0003 29 1 4.4776 -1.2831 0.0104 30 1 0.9301 -2.5772 0.5896 31 1 2.6168 -3.1237 0.4335 32 1 2.4775 -2.8510 -2.0272 33 1 0.7907 -2.3045 -1.8711 34 1 1.0345 -4.8152 -0.6004 35 1 1.2435 -3.2413 -3.8383 36 1 0.6922 -4.3360 -5.9704 37 1 -0.0673 -6.6685 -6.0060 38 1 -2.3384 -8.2005 -6.4463 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163923571.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:52 Heat of formation + Delta-G solvation = 15.676238 kcal Electronic energy + Delta-G solvation = -21827.433765 eV Core-core repulsion = 18391.101502 eV Total energy + Delta-G solvation = -3436.332263 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.129 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.06927 -43.06776 -39.55466 -37.43688 -35.65285 -34.41875 -32.63925 -31.47974 -30.84843 -28.22539 -27.58482 -27.27483 -24.58722 -22.64114 -22.32486 -22.22900 -20.70442 -19.35563 -18.15871 -17.81085 -17.68636 -16.87345 -16.47501 -16.36927 -16.19949 -15.83594 -15.28470 -15.08357 -14.96640 -14.61422 -14.44480 -13.90293 -13.85475 -13.71451 -13.49050 -13.27449 -13.18143 -13.04932 -12.92394 -12.71097 -12.41279 -12.14385 -11.79767 -11.45129 -11.16810 -10.98250 -10.66343 -10.62899 -9.34549 -9.29942 -8.71477 -8.09138 -6.42391 0.86528 1.04578 1.11219 1.37697 1.48988 1.53851 1.64675 2.16039 2.19153 2.68113 2.71425 3.58837 3.60235 3.63426 3.67674 3.92724 4.03996 4.18840 4.39508 4.44297 4.47969 4.66549 4.67914 4.69396 4.80481 4.86790 4.99191 5.04350 5.06056 5.25026 5.34501 5.41719 5.69267 5.82933 5.84395 6.07502 6.15359 6.20831 6.40461 6.68070 6.79546 6.82878 7.03550 7.13038 8.26264 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.036987 B = 0.003065 C = 0.002994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 756.834651 B = 9132.918548 C = 9349.773534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.194 3.806 3 N -0.531 5.531 4 C -0.053 4.053 5 C -0.054 4.054 6 N -0.452 5.452 7 C 0.103 3.897 8 C 0.130 3.870 9 N -0.747 5.747 10 C 0.214 3.786 11 C -0.283 4.283 12 C -0.073 4.073 13 C -0.209 4.209 14 C 0.090 3.910 15 C -0.494 4.494 16 H 0.070 0.930 17 C 0.041 3.959 18 N -0.812 5.812 19 Si 0.983 3.017 20 H -0.262 1.262 21 H -0.261 1.261 22 H -0.259 1.259 23 C -0.128 4.128 24 F -0.171 7.171 25 H 0.094 0.906 26 H 0.090 0.910 27 H 0.081 0.919 28 H 0.185 0.815 29 H 0.201 0.799 30 H 0.113 0.887 31 H 0.118 0.882 32 H 0.056 0.944 33 H 0.056 0.944 34 H 0.401 0.599 35 H 0.121 0.879 36 H 0.120 0.880 37 H 0.108 0.892 38 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.663 9.007 8.134 13.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.069 4.069 3 N -0.252 5.252 4 C -0.199 4.199 5 C -0.186 4.186 6 N -0.136 5.136 7 C -0.020 4.020 8 C 0.004 3.996 9 N -0.382 5.382 10 C 0.112 3.888 11 C -0.306 4.306 12 C -0.092 4.092 13 C -0.229 4.229 14 C 0.086 3.914 15 C -0.523 4.523 16 H 0.088 0.912 17 C -0.176 4.176 18 N -0.436 5.436 19 Si 0.803 3.197 20 H -0.187 1.187 21 H -0.185 1.185 22 H -0.184 1.184 23 C -0.152 4.152 24 F -0.150 7.150 25 H 0.113 0.887 26 H 0.109 0.891 27 H 0.100 0.900 28 H 0.203 0.797 29 H 0.218 0.782 30 H 0.131 0.869 31 H 0.136 0.864 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.236 0.764 35 H 0.139 0.861 36 H 0.138 0.862 37 H 0.126 0.874 38 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 5.225 9.877 7.930 13.702 hybrid contribution 0.161 -1.848 0.177 1.863 sum 5.386 8.030 8.107 12.618 Atomic orbital electron populations 1.20321 0.83455 1.04623 1.04529 1.23822 0.96818 0.81397 1.04828 1.70221 1.03505 1.29580 1.21850 1.22700 0.94779 0.93883 1.08581 1.23220 0.87675 0.96952 1.10775 1.45364 1.06749 1.07154 1.54291 1.21972 1.04014 0.79107 0.96925 1.21366 0.99338 0.82416 0.96462 1.44070 1.76452 1.12192 1.05454 1.17391 0.94607 0.89194 0.87571 1.20038 1.19659 1.00449 0.90493 1.20800 0.96754 0.94337 0.97284 1.20984 1.09307 0.95491 0.97162 1.17762 0.89476 0.93779 0.90363 1.19665 1.29315 0.96113 1.07177 0.91189 1.26728 0.92216 1.05104 0.93577 1.69868 1.20577 1.38858 1.14327 0.85239 0.79488 0.75994 0.78952 1.18657 1.18527 1.18360 1.17505 1.25091 0.91261 0.81363 1.91173 1.95928 1.80925 1.46994 0.88744 0.89077 0.90016 0.79745 0.78168 0.86879 0.86428 0.92617 0.92606 0.76405 0.86112 0.86199 0.87422 0.89668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.22 10.04 71.24 0.71 -0.51 16 2 C 0.19 4.48 7.90 138.13 1.09 5.57 16 3 N -0.53 -14.38 11.25 -188.13 -2.12 -16.50 16 4 C -0.05 -1.18 11.87 83.53 0.99 -0.19 16 5 C -0.05 -1.03 11.58 83.09 0.96 -0.07 16 6 N -0.45 -9.10 2.75 -514.30 -1.41 -10.52 16 7 C 0.10 1.74 5.79 86.38 0.50 2.24 16 8 C 0.13 3.08 5.23 86.38 0.45 3.53 16 9 N -0.75 -23.31 5.74 -339.34 -1.95 -25.26 16 10 C 0.21 9.03 6.65 38.14 0.25 9.29 16 11 C -0.28 -11.64 9.32 22.57 0.21 -11.43 16 12 C -0.07 -3.22 10.01 22.21 0.22 -3.00 16 13 C -0.21 -10.73 8.69 22.74 0.20 -10.54 16 14 C 0.09 4.90 5.57 -21.27 -0.12 4.78 16 15 C -0.49 -27.14 8.78 23.44 0.21 -26.94 16 16 H 0.07 3.84 7.74 -2.91 -0.02 3.82 16 17 C 0.04 2.03 5.14 85.25 0.44 2.47 16 18 N -0.81 -41.52 10.98 21.82 0.24 -41.28 16 19 Si 0.98 37.83 29.60 68.60 2.03 39.86 16 20 H -0.26 -9.92 7.11 99.48 0.71 -9.21 16 21 H -0.26 -9.29 7.11 99.48 0.71 -8.58 16 22 H -0.26 -9.77 7.11 99.48 0.71 -9.07 16 23 C -0.13 -6.41 7.31 22.99 0.17 -6.24 16 24 F -0.17 -8.39 16.08 44.97 0.72 -7.67 16 25 H 0.09 1.32 8.14 -2.38 -0.02 1.30 16 26 H 0.09 1.54 8.14 -2.38 -0.02 1.52 16 27 H 0.08 1.31 7.36 -2.39 -0.02 1.30 16 28 H 0.19 3.18 8.06 -2.91 -0.02 3.15 16 29 H 0.20 2.52 8.06 -2.91 -0.02 2.50 16 30 H 0.11 1.61 7.92 -2.39 -0.02 1.60 16 31 H 0.12 1.60 8.13 -2.39 -0.02 1.58 16 32 H 0.06 1.41 7.94 -2.38 -0.02 1.39 16 33 H 0.06 1.42 7.47 -2.39 -0.02 1.40 16 34 H 0.40 11.50 7.95 -92.71 -0.74 10.76 16 35 H 0.12 4.28 6.70 -2.91 -0.02 4.26 16 36 H 0.12 4.56 8.06 -2.91 -0.02 4.54 16 37 H 0.11 5.74 6.18 -2.91 -0.02 5.72 16 38 H 0.29 13.39 8.30 -92.71 -0.77 12.62 16 Total: -1.00 -65.97 327.75 4.16 -61.81 By element: Atomic # 1 Polarization: 30.24 SS G_CDS: 0.35 Total: 30.59 kcal Atomic # 6 Polarization: -37.33 SS G_CDS: 6.29 Total: -31.04 kcal Atomic # 7 Polarization: -88.31 SS G_CDS: -5.24 Total: -93.55 kcal Atomic # 9 Polarization: -8.39 SS G_CDS: 0.72 Total: -7.67 kcal Atomic # 14 Polarization: 37.83 SS G_CDS: 2.03 Total: 39.86 kcal Total: -65.97 4.16 -61.81 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163923571.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.487 kcal (2) G-P(sol) polarization free energy of solvation -65.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.811 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds