Wall clock time and date at job start Tue Mar 31 2020 06:31:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.30495 * 125.64837 * 2 1 4 4 C 1.34121 * 109.25657 * 180.02562 * 3 2 1 5 5 C 1.34660 * 108.02065 * 359.73201 * 4 3 2 6 6 N 1.35035 * 125.65234 * 180.02562 * 2 1 3 7 7 C 1.46504 * 126.39589 * 359.96666 * 6 2 1 8 8 C 1.53002 * 109.47427 * 84.99690 * 7 6 2 9 9 N 1.46492 * 109.47392 * 179.97438 * 8 7 6 10 10 C 1.39678 * 120.00485 * 179.97438 * 9 8 7 11 11 C 1.39295 * 119.93365 * 359.72668 * 10 9 8 12 12 C 1.38698 * 120.39578 * 179.76134 * 11 10 9 13 13 F 1.35107 * 119.86248 * 180.27806 * 12 11 10 14 14 C 1.37921 * 120.27810 * 0.51754 * 12 11 10 15 15 C 1.40712 * 119.86387 * 359.73786 * 14 12 11 16 16 C 1.41412 * 120.19208 * 180.02562 * 15 14 12 17 17 H 1.08001 * 119.99575 * 204.46318 * 16 15 14 18 18 C 1.39926 * 119.99938 * 24.46736 * 16 15 14 19 19 N 1.30828 * 120.00025 * 17.90971 * 18 16 15 20 20 Si 1.86794 * 119.99850 * 197.90776 * 18 16 15 21 21 H 1.48498 * 109.47198 * 359.97438 * 20 18 16 22 22 H 1.48507 * 109.47127 * 120.00094 * 20 18 16 23 23 H 1.48500 * 109.47449 * 239.99992 * 20 18 16 24 24 C 1.38293 * 119.94271 * 179.97438 * 10 9 8 25 25 H 1.08999 * 109.46838 * 269.95364 * 1 2 3 26 26 H 1.09000 * 109.47276 * 29.95300 * 1 2 3 27 27 H 1.08998 * 109.46979 * 149.96084 * 1 2 3 28 28 H 1.08003 * 125.98810 * 180.02562 * 4 3 2 29 29 H 1.08004 * 126.59077 * 180.27632 * 5 4 3 30 30 H 1.09008 * 109.46993 * 204.99855 * 7 6 2 31 31 H 1.08999 * 109.47280 * 324.99261 * 7 6 2 32 32 H 1.08997 * 109.46719 * 300.00199 * 8 7 6 33 33 H 1.09001 * 109.46555 * 59.99837 * 8 7 6 34 34 H 0.97011 * 119.99778 * 0.02562 * 9 8 7 35 35 H 1.08000 * 119.79672 * 0.02562 * 11 10 9 36 36 H 1.07996 * 120.06710 * 179.76583 * 14 12 11 37 37 H 0.97000 * 120.00270 * 180.02562 * 19 18 16 38 38 H 1.08005 * 120.13295 * 359.96397 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2676 1.0604 0.0000 4 6 3.5543 0.6819 -0.0006 5 6 3.5926 -0.6641 0.0051 6 7 2.2941 -1.0973 -0.0005 7 6 1.8426 -2.4910 -0.0004 8 6 1.5650 -2.9373 -1.4373 9 7 1.1141 -4.3311 -1.4373 10 6 0.7975 -4.9628 -2.6422 11 6 0.9055 -4.2644 -3.8425 12 6 0.5983 -4.8838 -5.0449 13 9 0.7123 -4.1979 -6.2034 14 6 0.1722 -6.1954 -5.0626 15 6 0.0539 -6.9100 -3.8562 16 6 -0.3818 -8.2553 -3.8662 17 1 -0.8454 -8.6792 -2.9878 18 6 -0.2120 -9.0370 -5.0142 19 7 0.6387 -8.6681 -5.9371 20 14 -1.2002 -10.6076 -5.2291 21 1 -2.0853 -10.8004 -4.0525 22 1 -2.0260 -10.5084 -6.4594 23 1 -0.2745 -11.7628 -5.3462 24 6 0.3724 -6.2788 -2.6407 25 1 -0.3633 -0.0008 1.0277 26 1 -0.3634 0.8904 -0.5131 27 1 -0.3633 -0.8896 -0.5144 28 1 4.4097 1.3412 -0.0003 29 1 4.4777 -1.2830 0.0104 30 1 2.6169 -3.1238 0.4335 31 1 0.9301 -2.5773 0.5895 32 1 0.7908 -2.3045 -1.8711 33 1 2.4775 -2.8510 -2.0272 34 1 1.0346 -4.8152 -0.6004 35 1 1.2345 -3.2358 -3.8372 36 1 -0.0697 -6.6732 -6.0004 37 1 0.7562 -9.2098 -6.7331 38 1 0.2853 -6.8194 -1.7098 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163933341.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:56 Heat of formation + Delta-G solvation = 29.665423 kcal Electronic energy + Delta-G solvation = -21631.666382 eV Core-core repulsion = 18195.940735 eV Total energy + Delta-G solvation = -3435.725647 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.129 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -47.63868 -42.21286 -38.07678 -35.99892 -34.17998 -32.84804 -31.85896 -29.66118 -29.49316 -27.12911 -26.52007 -25.57430 -23.33870 -21.50467 -21.04214 -20.51744 -19.80036 -17.90120 -17.03214 -16.18499 -15.92482 -15.36874 -15.17765 -14.83691 -14.71888 -14.34967 -14.21020 -14.07231 -13.96910 -13.46076 -13.08424 -13.05004 -12.88709 -12.45713 -12.28691 -12.17423 -11.84024 -11.64205 -11.18455 -11.08840 -10.76246 -10.50684 -10.14981 -10.07707 -9.77721 -9.72958 -9.42673 -8.80924 -8.45710 -7.51000 -6.90321 -6.51136 -4.54361 1.90264 2.52690 2.63533 2.90926 3.02142 3.04752 3.06887 3.14323 3.83422 3.98322 4.37719 4.39284 4.48395 4.61446 4.72115 4.96490 5.15987 5.28801 5.35493 5.50044 5.59049 5.63905 5.71484 5.72784 5.82064 6.18807 6.27325 6.55433 6.64750 6.70545 6.90604 7.04060 7.06010 7.08967 7.38867 7.69068 7.74955 7.96616 7.99780 8.23533 8.31711 8.52158 8.76801 8.82872 10.05680 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.029934 B = 0.003062 C = 0.002934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 935.154008 B = 9141.640084 C = 9542.440144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.207 3.793 3 N -0.495 5.495 4 C -0.030 4.030 5 C -0.056 4.056 6 N -0.451 5.451 7 C 0.094 3.906 8 C 0.123 3.877 9 N -0.757 5.757 10 C 0.249 3.751 11 C -0.338 4.338 12 C 0.135 3.865 13 F -0.167 7.167 14 C -0.231 4.231 15 C 0.159 3.841 16 C -0.455 4.455 17 H 0.083 0.917 18 C 0.076 3.924 19 N -0.782 5.782 20 Si 0.910 3.090 21 H -0.259 1.259 22 H -0.270 1.270 23 H -0.274 1.274 24 C -0.295 4.295 25 H 0.079 0.921 26 H 0.090 0.910 27 H 0.076 0.924 28 H 0.169 0.831 29 H 0.174 0.826 30 H 0.098 0.902 31 H 0.097 0.903 32 H 0.060 0.940 33 H 0.059 0.941 34 H 0.393 0.607 35 H 0.097 0.903 36 H 0.127 0.873 37 H 0.283 0.717 38 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.673 8.275 10.309 13.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.055 4.055 3 N -0.214 5.214 4 C -0.178 4.178 5 C -0.189 4.189 6 N -0.134 5.134 7 C -0.029 4.029 8 C -0.003 4.003 9 N -0.392 5.392 10 C 0.150 3.850 11 C -0.362 4.362 12 C 0.115 3.885 13 F -0.146 7.146 14 C -0.252 4.252 15 C 0.156 3.844 16 C -0.484 4.484 17 H 0.101 0.899 18 C -0.144 4.144 19 N -0.406 5.406 20 Si 0.734 3.266 21 H -0.183 1.183 22 H -0.195 1.195 23 H -0.199 1.199 24 C -0.319 4.319 25 H 0.097 0.903 26 H 0.109 0.891 27 H 0.095 0.905 28 H 0.186 0.814 29 H 0.191 0.809 30 H 0.116 0.884 31 H 0.115 0.885 32 H 0.078 0.922 33 H 0.077 0.923 34 H 0.226 0.774 35 H 0.115 0.885 36 H 0.145 0.855 37 H 0.094 0.906 38 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 1.522 9.068 9.963 13.558 hybrid contribution 0.243 -1.638 -0.125 1.661 sum 1.765 7.430 9.838 12.454 Atomic orbital electron populations 1.20235 0.84966 1.04416 1.03424 1.23342 0.95772 0.81309 1.05055 1.70242 1.02313 1.28303 1.20557 1.22264 0.94786 0.92769 1.08003 1.22738 0.87050 0.96931 1.12172 1.45278 1.06614 1.07052 1.54491 1.22017 1.02387 0.79546 0.98984 1.21322 1.00032 0.84933 0.94062 1.44128 1.77592 1.10827 1.06683 1.17033 0.92983 0.91042 0.83928 1.19660 1.25539 1.00221 0.90762 1.17382 1.00670 0.90627 0.79800 1.91331 1.94252 1.80354 1.48670 1.21178 1.11757 0.91570 1.00665 1.17064 0.85657 0.92259 0.89439 1.19612 1.34543 0.95349 0.98927 0.89934 1.25985 0.93510 0.99979 0.94885 1.69848 1.25579 1.37325 1.07834 0.86235 0.80311 0.80512 0.79556 1.18251 1.19549 1.19887 1.20405 1.19439 0.93948 0.98125 0.90258 0.89112 0.90476 0.81385 0.80893 0.88387 0.88480 0.92232 0.92267 0.77357 0.88531 0.85538 0.90609 0.88506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.67 10.04 36.01 0.36 -0.30 16 2 C 0.21 2.56 7.90 -155.42 -1.23 1.33 16 3 N -0.49 -6.98 11.25 -10.82 -0.12 -7.10 16 4 C -0.03 -0.37 11.87 -17.82 -0.21 -0.58 16 5 C -0.06 -0.61 11.58 -16.57 -0.19 -0.81 16 6 N -0.45 -5.06 2.75 -113.90 -0.31 -5.37 16 7 C 0.09 0.89 5.79 -4.04 -0.02 0.87 16 8 C 0.12 1.60 5.23 -4.04 -0.02 1.57 16 9 N -0.76 -11.63 5.73 -58.70 -0.34 -11.96 16 10 C 0.25 5.18 6.64 -83.87 -0.56 4.62 16 11 C -0.34 -7.60 9.30 -39.02 -0.36 -7.96 16 12 C 0.13 3.34 7.28 -39.53 -0.29 3.05 16 13 F -0.17 -4.03 17.26 2.25 0.04 -3.99 16 14 C -0.23 -6.04 8.67 -38.76 -0.34 -6.38 16 15 C 0.16 4.09 5.57 -106.86 -0.60 3.50 16 16 C -0.46 -11.53 9.05 -37.74 -0.34 -11.87 16 17 H 0.08 1.98 7.91 -52.49 -0.42 1.57 16 18 C 0.08 1.84 5.14 -17.35 -0.09 1.75 16 19 N -0.78 -19.76 10.96 55.55 0.61 -19.15 16 20 Si 0.91 17.88 29.59 -169.99 -5.03 12.85 16 21 H -0.26 -5.00 7.11 56.52 0.40 -4.60 16 22 H -0.27 -5.27 7.11 56.52 0.40 -4.87 16 23 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 24 C -0.30 -6.75 9.63 -38.67 -0.37 -7.12 16 25 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 27 H 0.08 0.67 7.36 -51.93 -0.38 0.29 16 28 H 0.17 1.58 8.06 -52.48 -0.42 1.16 16 29 H 0.17 1.40 8.06 -52.48 -0.42 0.98 16 30 H 0.10 0.79 8.14 -51.92 -0.42 0.37 16 31 H 0.10 0.77 7.92 -51.93 -0.41 0.36 16 32 H 0.06 0.83 7.46 -51.93 -0.39 0.45 16 33 H 0.06 0.86 7.95 -51.93 -0.41 0.45 16 34 H 0.39 5.07 8.48 -40.81 -0.35 4.73 16 35 H 0.10 2.02 6.70 -52.49 -0.35 1.67 16 36 H 0.13 3.46 6.15 -52.49 -0.32 3.14 16 37 H 0.28 6.47 8.30 -40.82 -0.34 6.13 16 38 H 0.10 2.04 8.06 -52.48 -0.42 1.62 16 LS Contribution 329.36 15.07 4.96 4.96 Total: -1.00 -29.82 329.36 -9.15 -38.96 By element: Atomic # 1 Polarization: 13.82 SS G_CDS: -4.70 Total: 9.12 kcal Atomic # 6 Polarization: -14.06 SS G_CDS: -4.26 Total: -18.32 kcal Atomic # 7 Polarization: -43.43 SS G_CDS: -0.16 Total: -43.59 kcal Atomic # 9 Polarization: -4.03 SS G_CDS: 0.04 Total: -3.99 kcal Atomic # 14 Polarization: 17.88 SS G_CDS: -5.03 Total: 12.85 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -29.82 -9.15 -38.96 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163933341.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.629 kcal (2) G-P(sol) polarization free energy of solvation -29.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.964 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds