Wall clock time and date at job start Tue Mar 31 2020 06:31:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.30495 * 125.64837 * 2 1 4 4 C 1.34121 * 109.25657 * 180.02562 * 3 2 1 5 5 C 1.34660 * 108.02065 * 359.73201 * 4 3 2 6 6 N 1.35035 * 125.65234 * 180.02562 * 2 1 3 7 7 C 1.46504 * 126.39589 * 359.96666 * 6 2 1 8 8 C 1.53002 * 109.47427 * 84.99690 * 7 6 2 9 9 N 1.46492 * 109.47392 * 179.97438 * 8 7 6 10 10 C 1.39678 * 120.00485 * 179.97438 * 9 8 7 11 11 C 1.39295 * 119.93365 * 359.72668 * 10 9 8 12 12 C 1.38698 * 120.39578 * 179.76134 * 11 10 9 13 13 F 1.35107 * 119.86248 * 180.27806 * 12 11 10 14 14 C 1.37921 * 120.27810 * 0.51754 * 12 11 10 15 15 C 1.40712 * 119.86387 * 359.73786 * 14 12 11 16 16 C 1.41412 * 120.19208 * 180.02562 * 15 14 12 17 17 H 1.08001 * 119.99575 * 204.46318 * 16 15 14 18 18 C 1.39926 * 119.99938 * 24.46736 * 16 15 14 19 19 N 1.30828 * 120.00025 * 17.90971 * 18 16 15 20 20 Si 1.86794 * 119.99850 * 197.90776 * 18 16 15 21 21 H 1.48498 * 109.47198 * 359.97438 * 20 18 16 22 22 H 1.48507 * 109.47127 * 120.00094 * 20 18 16 23 23 H 1.48500 * 109.47449 * 239.99992 * 20 18 16 24 24 C 1.38293 * 119.94271 * 179.97438 * 10 9 8 25 25 H 1.08999 * 109.46838 * 269.95364 * 1 2 3 26 26 H 1.09000 * 109.47276 * 29.95300 * 1 2 3 27 27 H 1.08998 * 109.46979 * 149.96084 * 1 2 3 28 28 H 1.08003 * 125.98810 * 180.02562 * 4 3 2 29 29 H 1.08004 * 126.59077 * 180.27632 * 5 4 3 30 30 H 1.09008 * 109.46993 * 204.99855 * 7 6 2 31 31 H 1.08999 * 109.47280 * 324.99261 * 7 6 2 32 32 H 1.08997 * 109.46719 * 300.00199 * 8 7 6 33 33 H 1.09001 * 109.46555 * 59.99837 * 8 7 6 34 34 H 0.97011 * 119.99778 * 0.02562 * 9 8 7 35 35 H 1.08000 * 119.79672 * 0.02562 * 11 10 9 36 36 H 1.07996 * 120.06710 * 179.76583 * 14 12 11 37 37 H 0.97000 * 120.00270 * 180.02562 * 19 18 16 38 38 H 1.08005 * 120.13295 * 359.96397 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2676 1.0604 0.0000 4 6 3.5543 0.6819 -0.0006 5 6 3.5926 -0.6641 0.0051 6 7 2.2941 -1.0973 -0.0005 7 6 1.8426 -2.4910 -0.0004 8 6 1.5650 -2.9373 -1.4373 9 7 1.1141 -4.3311 -1.4373 10 6 0.7975 -4.9628 -2.6422 11 6 0.9055 -4.2644 -3.8425 12 6 0.5983 -4.8838 -5.0449 13 9 0.7123 -4.1979 -6.2034 14 6 0.1722 -6.1954 -5.0626 15 6 0.0539 -6.9100 -3.8562 16 6 -0.3818 -8.2553 -3.8662 17 1 -0.8454 -8.6792 -2.9878 18 6 -0.2120 -9.0370 -5.0142 19 7 0.6387 -8.6681 -5.9371 20 14 -1.2002 -10.6076 -5.2291 21 1 -2.0853 -10.8004 -4.0525 22 1 -2.0260 -10.5084 -6.4594 23 1 -0.2745 -11.7628 -5.3462 24 6 0.3724 -6.2788 -2.6407 25 1 -0.3633 -0.0008 1.0277 26 1 -0.3634 0.8904 -0.5131 27 1 -0.3633 -0.8896 -0.5144 28 1 4.4097 1.3412 -0.0003 29 1 4.4777 -1.2830 0.0104 30 1 2.6169 -3.1238 0.4335 31 1 0.9301 -2.5773 0.5895 32 1 0.7908 -2.3045 -1.8711 33 1 2.4775 -2.8510 -2.0272 34 1 1.0346 -4.8152 -0.6004 35 1 1.2345 -3.2358 -3.8372 36 1 -0.0697 -6.6732 -6.0004 37 1 0.7562 -9.2098 -6.7331 38 1 0.2853 -6.8194 -1.7098 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163933341.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:56 Heat of formation + Delta-G solvation = 13.678120 kcal Electronic energy + Delta-G solvation = -21632.359643 eV Core-core repulsion = 18195.940735 eV Total energy + Delta-G solvation = -3436.418908 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.129 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -49.57243 -43.06312 -39.72128 -37.36898 -35.61037 -34.30465 -32.63450 -31.48809 -30.85619 -28.24538 -27.60738 -27.38777 -24.50194 -22.83550 -22.33150 -22.20308 -20.70554 -19.55380 -18.12407 -17.65553 -17.45075 -16.65155 -16.52152 -16.34083 -16.28880 -16.15378 -15.65505 -15.35812 -15.10845 -14.66336 -14.47440 -13.92459 -13.86269 -13.66464 -13.49749 -13.27693 -13.18527 -13.02980 -12.77324 -12.68177 -12.35882 -12.12273 -11.98333 -11.56276 -11.15686 -10.97929 -10.65658 -10.49325 -9.38618 -9.30006 -8.70006 -8.14640 -6.45188 0.82484 1.04763 1.10407 1.41041 1.52736 1.56896 1.67455 2.16011 2.20126 2.67204 2.73351 3.60325 3.62119 3.67013 3.69993 3.84927 3.96175 4.20854 4.39799 4.47952 4.49317 4.68241 4.68625 4.70884 4.76494 4.87243 4.90192 5.05353 5.07000 5.25531 5.34612 5.42193 5.65046 5.80614 5.83027 5.90664 6.11243 6.22553 6.45939 6.68731 6.86712 6.90184 7.09306 7.13284 8.28294 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.029934 B = 0.003062 C = 0.002934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 935.154008 B = 9141.640084 C = 9542.440144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.194 3.806 3 N -0.533 5.533 4 C -0.055 4.055 5 C -0.054 4.054 6 N -0.453 5.453 7 C 0.104 3.896 8 C 0.125 3.875 9 N -0.739 5.739 10 C 0.265 3.735 11 C -0.342 4.342 12 C 0.122 3.878 13 F -0.169 7.169 14 C -0.263 4.263 15 C 0.135 3.865 16 C -0.485 4.485 17 H 0.089 0.911 18 C 0.034 3.966 19 N -0.818 5.818 20 Si 0.985 3.015 21 H -0.251 1.251 22 H -0.268 1.268 23 H -0.265 1.265 24 C -0.305 4.305 25 H 0.097 0.903 26 H 0.088 0.912 27 H 0.083 0.917 28 H 0.184 0.816 29 H 0.201 0.799 30 H 0.120 0.880 31 H 0.119 0.881 32 H 0.052 0.948 33 H 0.046 0.954 34 H 0.409 0.591 35 H 0.112 0.888 36 H 0.104 0.896 37 H 0.289 0.711 38 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.619 7.814 12.311 14.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.069 4.069 3 N -0.254 5.254 4 C -0.201 4.201 5 C -0.187 4.187 6 N -0.136 5.136 7 C -0.019 4.019 8 C -0.001 4.001 9 N -0.373 5.373 10 C 0.163 3.837 11 C -0.365 4.365 12 C 0.102 3.898 13 F -0.148 7.148 14 C -0.284 4.284 15 C 0.132 3.868 16 C -0.514 4.514 17 H 0.107 0.893 18 C -0.182 4.182 19 N -0.443 5.443 20 Si 0.805 3.195 21 H -0.174 1.174 22 H -0.193 1.193 23 H -0.190 1.190 24 C -0.330 4.330 25 H 0.115 0.885 26 H 0.107 0.893 27 H 0.102 0.898 28 H 0.201 0.799 29 H 0.218 0.782 30 H 0.139 0.861 31 H 0.137 0.863 32 H 0.070 0.930 33 H 0.065 0.935 34 H 0.246 0.754 35 H 0.130 0.870 36 H 0.122 0.878 37 H 0.100 0.900 38 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 1.487 8.638 12.014 14.871 hybrid contribution 0.336 -1.351 -0.702 1.559 sum 1.823 7.287 11.312 13.578 Atomic orbital electron populations 1.20328 0.83298 1.04615 1.04639 1.23857 0.96893 0.81404 1.04719 1.70212 1.03497 1.29734 1.21917 1.22687 0.94794 0.93951 1.08687 1.23211 0.87784 0.96926 1.10745 1.45385 1.06640 1.07362 1.54261 1.22014 1.04323 0.78927 0.96630 1.21358 0.99009 0.83168 0.96574 1.44043 1.75985 1.11759 1.05509 1.16999 0.90963 0.90429 0.85336 1.19850 1.25215 1.00946 0.90514 1.17629 1.00985 0.90531 0.80620 1.91313 1.94295 1.80229 1.48955 1.21074 1.14531 0.92499 1.00301 1.17412 0.86192 0.92962 0.90266 1.19924 1.35687 0.95757 1.00038 0.89286 1.26894 0.93934 1.03322 0.94080 1.69918 1.26897 1.38970 1.08542 0.85111 0.78664 0.76131 0.79554 1.17429 1.19320 1.19024 1.20575 1.19581 0.94937 0.97862 0.88491 0.89311 0.89839 0.79900 0.78204 0.86144 0.86251 0.92970 0.93545 0.75433 0.87012 0.87819 0.89986 0.86771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.17 10.04 71.24 0.72 -0.45 16 2 C 0.19 4.44 7.90 138.13 1.09 5.53 16 3 N -0.53 -14.57 11.25 -188.14 -2.12 -16.69 16 4 C -0.05 -1.25 11.87 83.52 0.99 -0.26 16 5 C -0.05 -1.05 11.58 83.08 0.96 -0.09 16 6 N -0.45 -8.94 2.75 -514.28 -1.41 -10.35 16 7 C 0.10 1.58 5.79 86.38 0.50 2.08 16 8 C 0.12 2.87 5.23 86.38 0.45 3.32 16 9 N -0.74 -20.37 5.73 -339.62 -1.95 -22.32 16 10 C 0.26 10.58 6.64 38.16 0.25 10.83 16 11 C -0.34 -15.09 9.30 22.63 0.21 -14.88 16 12 C 0.12 6.15 7.28 22.30 0.16 6.31 16 13 F -0.17 -8.31 17.26 44.97 0.78 -7.53 16 14 C -0.26 -14.25 8.67 22.80 0.20 -14.05 16 15 C 0.14 7.06 5.57 -21.31 -0.12 6.94 16 16 C -0.49 -24.87 9.05 23.46 0.21 -24.66 16 17 H 0.09 4.27 7.91 -2.91 -0.02 4.25 16 18 C 0.03 1.66 5.14 85.25 0.44 2.10 16 19 N -0.82 -42.50 10.96 21.82 0.24 -42.27 16 20 Si 0.99 36.59 29.59 68.60 2.03 38.62 16 21 H -0.25 -8.91 7.11 99.48 0.71 -8.21 16 22 H -0.27 -9.78 7.11 99.48 0.71 -9.07 16 23 H -0.27 -9.44 7.11 99.48 0.71 -8.73 16 24 C -0.31 -13.70 9.63 22.86 0.22 -13.48 16 25 H 0.10 1.23 8.14 -2.39 -0.02 1.22 16 26 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 27 H 0.08 1.25 7.36 -2.39 -0.02 1.23 16 28 H 0.18 3.27 8.06 -2.91 -0.02 3.25 16 29 H 0.20 2.58 8.06 -2.91 -0.02 2.55 16 30 H 0.12 1.38 8.14 -2.38 -0.02 1.36 16 31 H 0.12 1.36 7.92 -2.39 -0.02 1.34 16 32 H 0.05 1.32 7.46 -2.39 -0.02 1.31 16 33 H 0.05 1.23 7.95 -2.39 -0.02 1.21 16 34 H 0.41 8.94 8.48 -92.70 -0.79 8.15 16 35 H 0.11 4.53 6.70 -2.91 -0.02 4.51 16 36 H 0.10 5.99 6.15 -2.91 -0.02 5.97 16 37 H 0.29 13.57 8.30 -92.71 -0.77 12.80 16 38 H 0.11 4.61 8.06 -2.91 -0.02 4.59 16 Total: -1.00 -66.26 329.36 4.16 -62.11 By element: Atomic # 1 Polarization: 28.88 SS G_CDS: 0.30 Total: 29.18 kcal Atomic # 6 Polarization: -37.04 SS G_CDS: 6.29 Total: -30.75 kcal Atomic # 7 Polarization: -86.39 SS G_CDS: -5.24 Total: -91.63 kcal Atomic # 9 Polarization: -8.31 SS G_CDS: 0.78 Total: -7.53 kcal Atomic # 14 Polarization: 36.59 SS G_CDS: 2.03 Total: 38.62 kcal Total: -66.26 4.16 -62.11 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163933341.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.784 kcal (2) G-P(sol) polarization free energy of solvation -66.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.106 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds