Wall clock time and date at job start Tue Mar 31 2020 05:42:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.31123 * 126.55313 * 2 1 4 4 C 1.34488 * 105.61651 * 179.97438 * 3 2 1 5 5 C 1.50705 * 126.29119 * 180.02562 * 4 3 2 6 6 C 1.53004 * 109.47004 * 270.02298 * 5 4 3 7 7 N 1.46498 * 109.47090 * 179.97438 * 6 5 4 8 8 C 1.46504 * 120.00112 * 270.00361 * 7 6 5 9 9 C 1.38825 * 119.99822 * 89.99888 * 7 6 5 10 10 C 1.39963 * 119.97211 * 4.99962 * 9 7 6 11 11 N 1.32127 * 120.32004 * 179.97438 * 10 9 7 12 12 C 1.31921 * 120.27212 * 0.02562 * 11 10 9 13 13 C 1.40681 * 119.93455 * 359.97438 * 12 11 10 14 14 C 1.41278 * 120.15610 * 180.02562 * 13 12 11 15 15 H 1.08000 * 119.99978 * 353.92469 * 14 13 12 16 16 C 1.40057 * 119.99941 * 173.91918 * 14 13 12 17 17 N 1.30733 * 119.99881 * 6.40741 * 16 14 13 18 18 Si 1.86791 * 120.00208 * 186.40520 * 16 14 13 19 19 H 1.48503 * 109.47213 * 60.00144 * 18 16 14 20 20 H 1.48500 * 109.47394 * 180.02562 * 18 16 14 21 21 H 1.48504 * 109.47185 * 300.00389 * 18 16 14 22 22 N 1.32239 * 119.97033 * 184.72495 * 9 7 6 23 23 N 1.29945 * 107.42654 * 359.97438 * 4 3 2 24 24 O 1.21298 * 110.24809 * 0.02562 * 23 4 3 25 25 H 1.08993 * 109.47454 * 90.00423 * 1 2 3 26 26 H 1.09004 * 109.47256 * 210.00079 * 1 2 3 27 27 H 1.09000 * 109.47179 * 329.99512 * 1 2 3 28 28 H 1.09001 * 109.46802 * 30.02040 * 5 4 3 29 29 H 1.08997 * 109.47381 * 150.02159 * 5 4 3 30 30 H 1.08998 * 109.47015 * 300.00068 * 6 5 4 31 31 H 1.09004 * 109.46866 * 59.99539 * 6 5 4 32 32 H 1.08998 * 109.47415 * 89.99767 * 8 7 6 33 33 H 1.09005 * 109.46689 * 210.00058 * 8 7 6 34 34 H 1.08999 * 109.47067 * 329.99478 * 8 7 6 35 35 H 1.08007 * 119.83803 * 359.95572 * 10 9 7 36 36 H 1.08005 * 120.03236 * 179.97438 * 12 11 10 37 37 H 0.97001 * 119.99892 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2879 1.0533 0.0000 4 6 3.5440 0.5727 0.0006 5 6 4.8112 1.3885 0.0014 6 6 5.2404 1.6653 -1.4409 7 7 6.4719 2.4588 -1.4402 8 6 6.4005 3.9221 -1.4396 9 6 7.7066 1.8241 -1.4399 10 6 7.7763 0.4302 -1.5460 11 7 8.9477 -0.1809 -1.5470 12 6 10.0623 0.5177 -1.4474 13 6 10.0052 1.9193 -1.3402 14 6 11.1960 2.6721 -1.2338 15 1 12.1463 2.1684 -1.1359 16 6 11.1440 4.0715 -1.2556 17 7 9.9885 4.6829 -1.2478 18 14 12.7257 5.0644 -1.2955 19 1 13.4987 4.7152 -2.5145 20 1 12.4004 6.5132 -1.3133 21 1 13.5355 4.7541 -0.0900 22 7 8.8160 2.5374 -1.3449 23 7 3.4645 -0.7243 0.0015 24 8 2.3029 -1.0736 0.0009 25 1 -0.3634 -0.0001 -1.0276 26 1 -0.3634 -0.8900 0.5139 27 1 -0.3633 0.8899 0.5139 28 1 4.6347 2.3333 0.5156 29 1 5.5983 0.8367 0.5152 30 1 5.4168 0.7205 -1.9551 31 1 4.4533 2.2171 -1.9547 32 1 6.3824 4.2846 -0.4118 33 1 7.2719 4.3285 -1.9530 34 1 5.4940 4.2418 -1.9537 35 1 6.8681 -0.1486 -1.6272 36 1 11.0178 0.0142 -1.4482 37 1 9.9525 5.6521 -1.2625 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001165218185.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:18 Heat of formation + Delta-G solvation = 121.417450 kcal Electronic energy + Delta-G solvation = -22163.515036 eV Core-core repulsion = 18751.688017 eV Total energy + Delta-G solvation = -3411.827019 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.128 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -45.64066 -39.05639 -36.86698 -35.74459 -33.96496 -33.89122 -31.87941 -30.58990 -29.41671 -28.93661 -26.75625 -25.24778 -24.14715 -23.19009 -21.93529 -21.31129 -20.17497 -18.23446 -17.55859 -17.45796 -16.34030 -15.58864 -15.33973 -14.92712 -14.85603 -14.51893 -13.82727 -13.73506 -13.63262 -13.44572 -12.96857 -12.78703 -12.57274 -12.24678 -12.21100 -11.62594 -11.47245 -11.33889 -11.31903 -11.21938 -11.10320 -10.71577 -10.64660 -10.39240 -9.97109 -9.76150 -9.48446 -9.33692 -8.30537 -7.37335 -6.64119 -6.45416 -4.65503 1.08976 2.16424 2.70142 2.73687 3.03243 3.05407 3.11226 3.28332 3.47142 3.82008 3.86942 4.15063 4.70524 4.83429 4.92289 4.93930 5.17994 5.27929 5.33212 5.55299 5.69580 5.80267 5.85746 5.93577 5.98060 6.07892 6.24056 6.35845 6.40364 6.44039 6.68968 6.91511 7.03190 7.16328 7.62033 7.77737 8.08647 8.15564 8.22273 8.56096 8.82447 9.42351 9.98759 10.17786 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.033082 B = 0.003418 C = 0.003164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.172167 B = 8189.723864 C = 8848.535087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 C 0.167 3.833 3 N -0.481 5.481 4 C 0.183 3.817 5 C -0.052 4.052 6 C 0.147 3.853 7 N -0.614 5.614 8 C 0.111 3.889 9 C 0.371 3.629 10 C -0.168 4.168 11 N -0.407 5.407 12 C -0.107 4.107 13 C 0.244 3.756 14 C -0.415 4.415 15 H 0.089 0.911 16 C 0.069 3.931 17 N -0.709 5.709 18 Si 0.911 3.089 19 H -0.264 1.264 20 H -0.277 1.277 21 H -0.264 1.264 22 N -0.501 5.501 23 N -0.378 5.378 24 O 0.075 5.925 25 H 0.100 0.900 26 H 0.096 0.904 27 H 0.103 0.897 28 H 0.096 0.904 29 H 0.096 0.904 30 H 0.077 0.923 31 H 0.072 0.928 32 H 0.034 0.966 33 H 0.090 0.910 34 H 0.042 0.958 35 H 0.121 0.879 36 H 0.130 0.870 37 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.224 -1.563 1.628 16.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.054 4.054 3 N -0.216 5.216 4 C -0.091 4.091 5 C -0.093 4.093 6 C 0.020 3.980 7 N -0.331 5.331 8 C -0.032 4.032 9 C 0.129 3.871 10 C -0.329 4.329 11 N -0.118 5.118 12 C -0.277 4.277 13 C 0.116 3.884 14 C -0.448 4.448 15 H 0.107 0.893 16 C -0.157 4.157 17 N -0.330 5.330 18 Si 0.735 3.265 19 H -0.188 1.188 20 H -0.202 1.202 21 H -0.188 1.188 22 N -0.227 5.227 23 N -0.085 5.085 24 O 0.016 5.984 25 H 0.118 0.882 26 H 0.114 0.886 27 H 0.121 0.879 28 H 0.114 0.886 29 H 0.115 0.885 30 H 0.095 0.905 31 H 0.091 0.909 32 H 0.053 0.947 33 H 0.108 0.892 34 H 0.060 0.940 35 H 0.138 0.862 36 H 0.147 0.853 37 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -15.662 -1.378 1.613 15.805 hybrid contribution 0.438 0.481 0.112 0.660 sum -15.224 -0.897 1.726 15.348 Atomic orbital electron populations 1.20351 0.80423 1.05691 1.05305 1.28836 0.98920 0.81070 0.96526 1.71899 1.00426 1.28924 1.20335 1.25851 0.95131 0.88148 0.99942 1.20620 0.88668 0.98636 1.01343 1.21095 0.86570 0.96961 0.93372 1.45890 1.01492 1.04914 1.80845 1.21414 1.01687 0.79672 1.00477 1.19472 0.87280 0.89360 0.91000 1.21982 0.95566 0.90914 1.24468 1.67525 0.98400 1.39958 1.05885 1.22915 0.95397 0.92788 1.16595 1.19109 0.91144 0.89842 0.88287 1.19578 0.93094 0.90911 1.41194 0.89256 1.26108 0.97543 0.98643 0.93454 1.70083 1.25534 1.09832 1.27572 0.86326 0.81828 0.78314 0.80040 1.18806 1.20220 1.18836 1.69049 0.95556 1.34819 1.23300 1.74728 0.96894 1.15875 1.20985 1.85306 1.11588 1.35760 1.65723 0.88163 0.88575 0.87874 0.88601 0.88537 0.90463 0.90947 0.94696 0.89180 0.93958 0.86183 0.85287 0.91463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.26 10.51 36.01 0.38 0.11 16 2 C 0.17 1.73 8.51 -13.06 -0.11 1.62 16 3 N -0.48 -6.45 11.55 -9.87 -0.11 -6.57 16 4 C 0.18 2.75 7.47 -156.38 -1.17 1.58 16 5 C -0.05 -0.81 6.17 -27.88 -0.17 -0.98 16 6 C 0.15 2.42 5.28 -4.04 -0.02 2.40 16 7 N -0.61 -12.37 2.98 -181.55 -0.54 -12.91 16 8 C 0.11 2.07 10.47 59.85 0.63 2.69 16 9 C 0.37 9.09 7.37 -155.02 -1.14 7.95 16 10 C -0.17 -4.14 10.44 -16.78 -0.18 -4.31 16 11 N -0.41 -10.63 10.47 -12.11 -0.13 -10.76 16 12 C -0.11 -2.80 10.97 -16.59 -0.18 -2.99 16 13 C 0.24 6.70 6.54 -84.83 -0.55 6.14 16 14 C -0.42 -10.79 9.15 -37.75 -0.35 -11.14 16 15 H 0.09 2.14 7.86 -52.49 -0.41 1.73 16 16 C 0.07 1.68 5.49 -17.34 -0.10 1.59 16 17 N -0.71 -17.83 11.51 55.55 0.64 -17.19 16 18 Si 0.91 17.93 29.56 -169.99 -5.03 12.90 16 19 H -0.26 -5.16 7.11 56.52 0.40 -4.75 16 20 H -0.28 -5.32 7.11 56.52 0.40 -4.92 16 21 H -0.26 -5.13 7.11 56.52 0.40 -4.73 16 22 N -0.50 -13.56 6.89 -10.14 -0.07 -13.63 16 23 N -0.38 -5.85 12.16 30.89 0.38 -5.48 16 24 O 0.08 0.95 11.31 18.10 0.20 1.15 16 25 H 0.10 0.29 8.14 -51.93 -0.42 -0.13 16 26 H 0.10 0.23 8.14 -51.93 -0.42 -0.20 16 27 H 0.10 0.38 8.14 -51.93 -0.42 -0.05 16 28 H 0.10 1.43 8.14 -51.93 -0.42 1.00 16 29 H 0.10 1.68 8.14 -51.93 -0.42 1.25 16 30 H 0.08 1.33 5.99 -51.93 -0.31 1.02 16 31 H 0.07 1.06 7.89 -51.93 -0.41 0.65 16 32 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.09 1.94 7.46 -51.93 -0.39 1.56 16 34 H 0.04 0.64 7.89 -51.93 -0.41 0.23 16 35 H 0.12 2.71 6.02 -52.48 -0.32 2.39 16 36 H 0.13 3.09 8.06 -52.48 -0.42 2.67 16 37 H 0.27 6.25 8.29 -40.82 -0.34 5.91 16 LS Contribution 324.42 15.07 4.89 4.89 Total: -1.00 -31.99 324.42 -7.07 -39.06 By element: Atomic # 1 Polarization: 8.20 SS G_CDS: -4.34 Total: 3.86 kcal Atomic # 6 Polarization: 7.63 SS G_CDS: -2.96 Total: 4.67 kcal Atomic # 7 Polarization: -66.69 SS G_CDS: 0.16 Total: -66.53 kcal Atomic # 8 Polarization: 0.95 SS G_CDS: 0.20 Total: 1.15 kcal Atomic # 14 Polarization: 17.93 SS G_CDS: -5.03 Total: 12.90 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -31.99 -7.07 -39.06 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165218185.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.478 kcal (2) G-P(sol) polarization free energy of solvation -31.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 128.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.061 kcal (6) G-S(sol) free energy of system = (1) + (5) 121.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds