Wall clock time and date at job start Tue Mar 31 2020 05:42:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.31123 * 126.55313 * 2 1 4 4 C 1.34488 * 105.61651 * 179.97438 * 3 2 1 5 5 C 1.50705 * 126.29119 * 180.02562 * 4 3 2 6 6 C 1.53004 * 109.47004 * 270.02298 * 5 4 3 7 7 N 1.46498 * 109.47090 * 179.97438 * 6 5 4 8 8 C 1.46504 * 120.00112 * 270.00361 * 7 6 5 9 9 C 1.38825 * 119.99822 * 89.99888 * 7 6 5 10 10 C 1.39963 * 119.97211 * 4.99962 * 9 7 6 11 11 N 1.32127 * 120.32004 * 179.97438 * 10 9 7 12 12 C 1.31921 * 120.27212 * 0.02562 * 11 10 9 13 13 C 1.40681 * 119.93455 * 359.97438 * 12 11 10 14 14 C 1.41278 * 120.15610 * 180.02562 * 13 12 11 15 15 H 1.08000 * 119.99978 * 353.92469 * 14 13 12 16 16 C 1.40057 * 119.99941 * 173.91918 * 14 13 12 17 17 N 1.30733 * 119.99881 * 6.40741 * 16 14 13 18 18 Si 1.86791 * 120.00208 * 186.40520 * 16 14 13 19 19 H 1.48503 * 109.47213 * 60.00144 * 18 16 14 20 20 H 1.48500 * 109.47394 * 180.02562 * 18 16 14 21 21 H 1.48504 * 109.47185 * 300.00389 * 18 16 14 22 22 N 1.32239 * 119.97033 * 184.72495 * 9 7 6 23 23 N 1.29945 * 107.42654 * 359.97438 * 4 3 2 24 24 O 1.21298 * 110.24809 * 0.02562 * 23 4 3 25 25 H 1.08993 * 109.47454 * 90.00423 * 1 2 3 26 26 H 1.09004 * 109.47256 * 210.00079 * 1 2 3 27 27 H 1.09000 * 109.47179 * 329.99512 * 1 2 3 28 28 H 1.09001 * 109.46802 * 30.02040 * 5 4 3 29 29 H 1.08997 * 109.47381 * 150.02159 * 5 4 3 30 30 H 1.08998 * 109.47015 * 300.00068 * 6 5 4 31 31 H 1.09004 * 109.46866 * 59.99539 * 6 5 4 32 32 H 1.08998 * 109.47415 * 89.99767 * 8 7 6 33 33 H 1.09005 * 109.46689 * 210.00058 * 8 7 6 34 34 H 1.08999 * 109.47067 * 329.99478 * 8 7 6 35 35 H 1.08007 * 119.83803 * 359.95572 * 10 9 7 36 36 H 1.08005 * 120.03236 * 179.97438 * 12 11 10 37 37 H 0.97001 * 119.99892 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2879 1.0533 0.0000 4 6 3.5440 0.5727 0.0006 5 6 4.8112 1.3885 0.0014 6 6 5.2404 1.6653 -1.4409 7 7 6.4719 2.4588 -1.4402 8 6 6.4005 3.9221 -1.4396 9 6 7.7066 1.8241 -1.4399 10 6 7.7763 0.4302 -1.5460 11 7 8.9477 -0.1809 -1.5470 12 6 10.0623 0.5177 -1.4474 13 6 10.0052 1.9193 -1.3402 14 6 11.1960 2.6721 -1.2338 15 1 12.1463 2.1684 -1.1359 16 6 11.1440 4.0715 -1.2556 17 7 9.9885 4.6829 -1.2478 18 14 12.7257 5.0644 -1.2955 19 1 13.4987 4.7152 -2.5145 20 1 12.4004 6.5132 -1.3133 21 1 13.5355 4.7541 -0.0900 22 7 8.8160 2.5374 -1.3449 23 7 3.4645 -0.7243 0.0015 24 8 2.3029 -1.0736 0.0009 25 1 -0.3634 -0.0001 -1.0276 26 1 -0.3634 -0.8900 0.5139 27 1 -0.3633 0.8899 0.5139 28 1 4.6347 2.3333 0.5156 29 1 5.5983 0.8367 0.5152 30 1 5.4168 0.7205 -1.9551 31 1 4.4533 2.2171 -1.9547 32 1 6.3824 4.2846 -0.4118 33 1 7.2719 4.3285 -1.9530 34 1 5.4940 4.2418 -1.9537 35 1 6.8681 -0.1486 -1.6272 36 1 11.0178 0.0142 -1.4482 37 1 9.9525 5.6521 -1.2625 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001165218185.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:18 Heat of formation + Delta-G solvation = 99.704035 kcal Electronic energy + Delta-G solvation = -22164.456600 eV Core-core repulsion = 18751.688017 eV Total energy + Delta-G solvation = -3412.768583 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.128 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -46.66813 -40.93342 -38.32971 -36.94294 -35.83167 -34.92845 -33.64107 -32.09058 -31.12393 -29.66421 -28.48696 -26.93357 -25.60278 -24.35507 -23.84977 -22.45085 -21.79400 -19.51267 -19.18093 -18.52369 -18.08669 -17.34873 -16.91335 -16.59554 -16.30206 -15.73798 -15.31812 -15.05959 -14.73895 -14.34201 -14.29076 -14.14707 -13.77275 -13.69190 -13.36523 -13.22439 -12.96892 -12.94467 -12.79899 -12.50268 -12.40386 -12.25729 -12.03179 -11.97672 -11.67193 -11.36039 -11.27623 -10.89598 -10.18440 -9.31219 -8.41941 -8.32558 -6.63331 0.17806 0.81071 1.11928 1.25216 1.43230 1.54791 1.58471 1.96413 2.12330 2.21799 2.70987 2.83063 3.04567 3.78383 3.84681 3.98206 4.02846 4.11653 4.27923 4.35829 4.43037 4.53720 4.60411 4.62380 4.68601 4.79532 4.80580 4.91010 4.92262 5.03587 5.10749 5.17682 5.19962 5.30625 5.70082 6.00866 6.27308 6.41020 6.65750 6.90273 7.18975 7.44893 8.04355 8.34960 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.033082 B = 0.003418 C = 0.003164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.172167 B = 8189.723864 C = 8848.535087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 C 0.185 3.815 3 N -0.504 5.504 4 C 0.171 3.829 5 C -0.039 4.039 6 C 0.150 3.850 7 N -0.611 5.611 8 C 0.115 3.885 9 C 0.366 3.634 10 C -0.178 4.178 11 N -0.419 5.419 12 C -0.133 4.133 13 C 0.213 3.787 14 C -0.437 4.437 15 H 0.100 0.900 16 C 0.025 3.975 17 N -0.734 5.734 18 Si 0.992 3.008 19 H -0.260 1.260 20 H -0.267 1.267 21 H -0.258 1.258 22 N -0.526 5.526 23 N -0.408 5.408 24 O 0.076 5.924 25 H 0.123 0.877 26 H 0.122 0.878 27 H 0.116 0.884 28 H 0.103 0.897 29 H 0.071 0.929 30 H 0.068 0.932 31 H 0.100 0.900 32 H 0.034 0.966 33 H 0.059 0.941 34 H 0.082 0.918 35 H 0.137 0.863 36 H 0.141 0.859 37 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.914 -0.552 1.570 17.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.034 4.034 3 N -0.239 5.239 4 C -0.102 4.102 5 C -0.080 4.080 6 C 0.025 3.975 7 N -0.327 5.327 8 C -0.027 4.027 9 C 0.122 3.878 10 C -0.340 4.340 11 N -0.130 5.130 12 C -0.302 4.302 13 C 0.085 3.915 14 C -0.469 4.469 15 H 0.118 0.882 16 C -0.199 4.199 17 N -0.355 5.355 18 Si 0.812 3.188 19 H -0.184 1.184 20 H -0.191 1.191 21 H -0.182 1.182 22 N -0.253 5.253 23 N -0.116 5.116 24 O 0.016 5.984 25 H 0.141 0.859 26 H 0.141 0.859 27 H 0.134 0.866 28 H 0.121 0.879 29 H 0.090 0.910 30 H 0.086 0.914 31 H 0.118 0.882 32 H 0.053 0.947 33 H 0.077 0.923 34 H 0.101 0.899 35 H 0.154 0.846 36 H 0.159 0.841 37 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -17.399 -0.373 1.558 17.472 hybrid contribution 0.742 0.157 0.142 0.771 sum -16.657 -0.216 1.700 16.745 Atomic orbital electron populations 1.20787 0.76045 1.07595 1.07258 1.29995 1.00633 0.79593 0.93184 1.71895 0.99921 1.29997 1.22053 1.25674 0.95522 0.88148 1.00825 1.20335 0.88627 0.98742 1.00297 1.21217 0.85565 0.96484 0.94221 1.46108 1.01085 1.05825 1.79660 1.21410 1.02188 0.78573 1.00575 1.19753 0.88303 0.89648 0.90104 1.22274 0.95735 0.91488 1.24539 1.67498 0.98918 1.40447 1.06135 1.23078 0.95992 0.92838 1.18277 1.19555 0.92114 0.90634 0.89156 1.20005 0.93189 0.92264 1.41466 0.88233 1.27044 1.01327 0.99043 0.92535 1.70160 1.27802 1.10689 1.26838 0.85102 0.76868 0.76707 0.80113 1.18406 1.19123 1.18219 1.69075 0.96085 1.35419 1.24695 1.74714 0.98525 1.16262 1.22145 1.85266 1.11036 1.36304 1.65760 0.85859 0.85930 0.86605 0.87905 0.90999 0.91388 0.88206 0.94727 0.92261 0.89908 0.84569 0.84129 0.90574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.30 10.51 71.24 0.75 0.45 16 2 C 0.19 3.42 8.51 88.38 0.75 4.17 16 3 N -0.50 -12.69 11.55 -303.23 -3.50 -16.20 16 4 C 0.17 5.06 7.47 138.47 1.03 6.09 16 5 C -0.04 -1.22 6.17 29.85 0.18 -1.04 16 6 C 0.15 4.84 5.28 86.38 0.46 5.30 16 7 N -0.61 -24.53 2.98 -728.29 -2.17 -26.70 16 8 C 0.12 4.23 10.47 127.77 1.34 5.56 16 9 C 0.37 18.35 7.37 133.37 0.98 19.33 16 10 C -0.18 -9.01 10.44 85.07 0.89 -8.12 16 11 N -0.42 -22.54 10.47 -192.23 -2.01 -24.56 16 12 C -0.13 -7.22 10.97 85.28 0.94 -6.29 16 13 C 0.21 12.06 6.54 40.15 0.26 12.32 16 14 C -0.44 -23.15 9.15 23.46 0.21 -22.93 16 15 H 0.10 4.85 7.86 -2.91 -0.02 4.83 16 16 C 0.02 1.21 5.49 85.30 0.47 1.67 16 17 N -0.73 -37.19 11.51 21.84 0.25 -36.94 16 18 Si 0.99 36.28 29.56 68.60 2.03 38.31 16 19 H -0.26 -9.29 7.11 99.48 0.71 -8.58 16 20 H -0.27 -9.23 7.11 99.48 0.71 -8.52 16 21 H -0.26 -9.14 7.11 99.48 0.71 -8.43 16 22 N -0.53 -29.26 6.89 -185.99 -1.28 -30.54 16 23 N -0.41 -12.52 12.16 -60.35 -0.73 -13.25 16 24 O 0.08 1.81 11.31 74.85 0.85 2.66 16 25 H 0.12 0.19 8.14 -2.39 -0.02 0.17 16 26 H 0.12 0.05 8.14 -2.38 -0.02 0.03 16 27 H 0.12 0.40 8.14 -2.39 -0.02 0.38 16 28 H 0.10 3.00 8.14 -2.39 -0.02 2.98 16 29 H 0.07 2.58 8.14 -2.39 -0.02 2.56 16 30 H 0.07 2.34 5.99 -2.39 -0.01 2.32 16 31 H 0.10 2.70 7.89 -2.38 -0.02 2.68 16 32 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 33 H 0.06 2.57 7.46 -2.38 -0.02 2.55 16 34 H 0.08 2.34 7.89 -2.39 -0.02 2.32 16 35 H 0.14 6.27 6.02 -2.91 -0.02 6.25 16 36 H 0.14 7.00 8.06 -2.91 -0.02 6.97 16 37 H 0.28 12.87 8.29 -92.71 -0.77 12.10 16 Total: -1.00 -71.63 324.42 2.79 -68.84 By element: Atomic # 1 Polarization: 20.75 SS G_CDS: 1.10 Total: 21.85 kcal Atomic # 6 Polarization: 8.26 SS G_CDS: 8.27 Total: 16.53 kcal Atomic # 7 Polarization: -138.73 SS G_CDS: -9.45 Total: -148.18 kcal Atomic # 8 Polarization: 1.81 SS G_CDS: 0.85 Total: 2.66 kcal Atomic # 14 Polarization: 36.28 SS G_CDS: 2.03 Total: 38.31 kcal Total: -71.63 2.79 -68.84 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165218185.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 168.546 kcal (2) G-P(sol) polarization free energy of solvation -71.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.842 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds