Wall clock time and date at job start Tue Mar 31 2020 06:28:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.43201 * 179.97438 * 2 1 4 4 C 1.40269 * 120.63712 * 331.73443 * 3 2 1 5 5 F 1.35100 * 120.84889 * 359.97438 * 4 3 2 6 6 C 1.38745 * 118.29891 * 179.97438 * 4 3 2 7 7 C 1.38158 * 119.47053 * 359.97438 * 6 4 3 8 8 N 1.31949 * 121.26692 * 359.97438 * 7 6 4 9 9 C 1.32381 * 121.86286 * 359.76590 * 8 7 6 10 10 N 1.38397 * 119.81976 * 180.24746 * 9 8 7 11 11 C 1.46905 * 111.00212 * 257.79126 * 10 9 8 12 12 C 1.50697 * 109.47149 * 61.47562 * 11 10 9 13 13 H 1.08005 * 120.00082 * 354.90318 * 12 11 10 14 14 C 1.37879 * 120.00101 * 174.90535 * 12 11 10 15 15 N 1.31510 * 119.99730 * 0.02562 * 14 12 11 16 16 Si 1.86802 * 120.00191 * 179.97438 * 14 12 11 17 17 H 1.48499 * 109.47002 * 59.99866 * 16 14 12 18 18 H 1.48495 * 109.47114 * 179.97438 * 16 14 12 19 19 H 1.48504 * 109.46950 * 300.00202 * 16 14 12 20 20 C 1.46900 * 111.00116 * 21.74166 * 10 9 8 21 21 C 1.54264 * 110.03836 * 181.24217 * 20 10 9 22 22 C 1.54882 * 104.19759 * 217.11003 * 21 20 10 23 23 C 1.54892 * 102.75142 * 37.93604 * 22 21 20 24 24 C 1.53880 * 110.03101 * 64.07239 * 20 10 9 25 25 H 1.07992 * 120.26504 * 179.97438 * 6 4 3 26 26 H 1.08007 * 119.36380 * 179.97438 * 7 6 4 27 27 H 1.09002 * 109.47656 * 181.47866 * 11 10 9 28 28 H 1.09002 * 109.46835 * 301.47717 * 11 10 9 29 29 H 0.97005 * 120.00013 * 179.97438 * 15 14 12 30 30 H 1.09008 * 110.01464 * 302.68625 * 20 10 9 31 31 H 1.09005 * 110.48267 * 335.78571 * 21 20 10 32 32 H 1.08996 * 110.49131 * 98.42279 * 21 20 10 33 33 H 1.09004 * 110.75389 * 279.62383 * 22 21 20 34 34 H 1.08998 * 110.92101 * 156.32800 * 22 21 20 35 35 H 1.08999 * 110.48644 * 203.38077 * 23 22 21 36 36 H 1.08997 * 110.48473 * 80.74045 * 23 22 21 37 37 H 1.08995 * 110.03061 * 238.57539 * 24 20 10 38 38 H 1.09000 * 110.02726 * 0.02562 * 24 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2833 -1.0620 0.5715 5 9 2.6388 -2.1076 1.1342 6 6 4.6695 -1.0118 0.5442 7 6 5.2991 0.0709 -0.0390 8 7 4.6073 1.0600 -0.5720 9 6 3.2835 1.0625 -0.5790 10 7 2.6003 2.1196 -1.1544 11 6 2.0832 3.0339 -0.1273 12 6 3.2336 3.6106 0.6569 13 1 4.2401 3.2652 0.4722 14 6 3.0011 4.5792 1.6103 15 7 1.7755 4.9993 1.8355 16 14 4.4270 5.2937 2.5829 17 1 5.3915 5.9315 1.6512 18 1 3.9153 6.3099 3.5371 19 1 5.1077 4.2078 3.3332 20 6 3.4502 2.8347 -2.1159 21 6 2.6781 4.0257 -2.7202 22 6 3.1405 4.0679 -4.1977 23 6 3.2523 2.5670 -4.5639 24 6 3.8153 1.9073 -3.2882 25 1 5.2518 -1.8126 0.9754 26 1 6.3784 0.1084 -0.0589 27 1 1.5284 3.8412 -0.6054 28 1 1.4223 2.4877 0.5457 29 1 1.6119 5.6805 2.5065 30 1 4.3560 3.1876 -1.6228 31 1 1.6034 3.8529 -2.6615 32 1 2.9447 4.9515 -2.2103 33 1 4.1091 4.5600 -4.2854 34 1 2.3988 4.5640 -4.8237 35 1 3.9381 2.4283 -5.3997 36 1 2.2704 2.1586 -4.8031 37 1 4.8983 1.8107 -3.3646 38 1 3.3615 0.9268 -3.1439 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166533807.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:47 Heat of formation + Delta-G solvation = 26.035864 kcal Electronic energy + Delta-G solvation = -23452.358079 eV Core-core repulsion = 20016.475043 eV Total energy + Delta-G solvation = -3435.883036 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.129 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -49.05096 -40.46613 -38.00437 -36.10793 -35.07405 -32.66631 -31.90977 -30.34706 -28.44101 -27.45467 -26.08792 -24.47098 -23.09094 -21.77713 -20.14755 -19.27173 -18.83995 -17.48352 -17.20886 -16.38022 -15.95936 -15.63537 -14.98078 -14.90390 -14.55262 -14.30901 -13.99971 -13.81640 -13.13014 -13.00516 -12.90561 -12.66102 -12.44390 -12.28879 -11.79581 -11.48905 -11.25151 -11.02313 -10.81908 -10.75433 -10.53528 -10.48830 -10.38165 -10.20632 -10.02224 -9.94515 -9.40690 -9.31475 -8.93795 -8.56032 -7.65244 -6.17277 -4.25852 0.80600 1.26609 3.10081 3.22953 3.28564 3.30288 3.34594 3.79683 4.07041 4.19061 4.31462 4.38068 4.71057 5.01050 5.08999 5.13418 5.16530 5.19298 5.40395 5.54072 5.83284 5.87589 5.88966 5.94345 6.02796 6.14122 6.21934 6.23142 6.30318 6.45541 6.50781 6.67579 6.79295 6.88031 7.02720 7.29079 7.45883 7.77028 7.89340 7.92910 8.02053 8.24591 8.82754 9.41350 10.89535 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.010299 B = 0.008472 C = 0.006159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2717.995272 B = 3304.337546 C = 4544.842237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.415 5.415 2 C 0.277 3.723 3 C -0.131 4.131 4 C 0.201 3.799 5 F -0.123 7.123 6 C -0.251 4.251 7 C 0.178 3.822 8 N -0.511 5.511 9 C 0.431 3.569 10 N -0.487 5.487 11 C 0.194 3.806 12 C -0.557 4.557 13 H 0.073 0.927 14 C 0.070 3.930 15 N -0.886 5.886 16 Si 0.893 3.107 17 H -0.274 1.274 18 H -0.287 1.287 19 H -0.276 1.276 20 C 0.097 3.903 21 C -0.112 4.112 22 C -0.123 4.123 23 C -0.121 4.121 24 C -0.113 4.113 25 H 0.149 0.851 26 H 0.166 0.834 27 H 0.056 0.944 28 H 0.032 0.968 29 H 0.265 0.735 30 H 0.080 0.920 31 H 0.070 0.930 32 H 0.072 0.928 33 H 0.063 0.937 34 H 0.060 0.940 35 H 0.057 0.943 36 H 0.061 0.939 37 H 0.063 0.937 38 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.993 -8.158 -7.441 13.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.090 5.090 2 C -0.038 4.038 3 C -0.140 4.140 4 C 0.171 3.829 5 F -0.101 7.101 6 C -0.273 4.273 7 C 0.017 3.983 8 N -0.225 5.225 9 C 0.197 3.803 10 N -0.205 5.205 11 C 0.072 3.928 12 C -0.595 4.595 13 H 0.091 0.909 14 C -0.134 4.134 15 N -0.524 5.524 16 Si 0.721 3.279 17 H -0.200 1.200 18 H -0.212 1.212 19 H -0.202 1.202 20 C -0.010 4.010 21 C -0.150 4.150 22 C -0.161 4.161 23 C -0.158 4.158 24 C -0.151 4.151 25 H 0.167 0.833 26 H 0.183 0.817 27 H 0.074 0.926 28 H 0.050 0.950 29 H 0.075 0.925 30 H 0.098 0.902 31 H 0.089 0.911 32 H 0.091 0.909 33 H 0.082 0.918 34 H 0.079 0.921 35 H 0.075 0.925 36 H 0.080 0.920 37 H 0.081 0.919 38 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 6.040 -7.462 -7.957 12.469 hybrid contribution 1.179 -0.150 1.679 2.057 sum 7.220 -7.612 -6.278 12.226 Atomic orbital electron populations 1.81116 1.11634 1.07682 1.08616 1.24703 0.91758 0.93656 0.93721 1.16514 0.86526 0.98285 1.12712 1.17737 0.90357 0.83049 0.91729 1.91542 1.81974 1.54720 1.81871 1.21818 0.91914 1.04119 1.09460 1.22683 1.00519 0.86572 0.88520 1.68101 1.07106 1.26103 1.21153 1.19652 0.86643 0.90228 0.83792 1.60091 1.32741 1.10736 1.16901 1.20031 0.95652 0.89967 0.87130 1.21757 0.94399 1.22741 1.20620 0.90868 1.24934 0.95639 0.96111 0.96757 1.69934 1.19433 1.29732 1.33265 0.86625 0.82490 0.78907 0.79900 1.19959 1.21223 1.20167 1.22104 0.95754 0.92504 0.90634 1.22384 1.00483 0.98137 0.94013 1.22466 1.00759 0.96075 0.96793 1.22316 1.00492 0.95896 0.97145 1.22200 1.00101 0.98699 0.94136 0.83342 0.81663 0.92606 0.95006 0.92499 0.90154 0.91097 0.90928 0.91842 0.92090 0.92471 0.92011 0.91857 0.92347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.41 -8.91 18.54 41.84 0.78 -8.14 16 2 C 0.28 5.61 13.22 -22.47 -0.30 5.31 16 3 C -0.13 -2.39 5.69 -106.35 -0.61 -3.00 16 4 C 0.20 3.06 7.36 -38.63 -0.28 2.78 16 5 F -0.12 -1.84 16.91 2.25 0.04 -1.81 16 6 C -0.25 -3.05 10.08 -39.42 -0.40 -3.44 16 7 C 0.18 2.28 11.16 -17.53 -0.20 2.09 16 8 N -0.51 -8.61 7.43 -12.21 -0.09 -8.70 16 9 C 0.43 8.14 4.08 -155.10 -0.63 7.51 16 10 N -0.49 -9.89 3.99 -165.46 -0.66 -10.55 16 11 C 0.19 4.70 4.57 -4.97 -0.02 4.68 16 12 C -0.56 -14.29 7.80 -34.44 -0.27 -14.55 16 13 H 0.07 1.85 5.90 -52.48 -0.31 1.54 16 14 C 0.07 1.86 5.46 -17.82 -0.10 1.76 16 15 N -0.89 -25.09 13.29 55.43 0.74 -24.35 16 16 Si 0.89 20.71 29.54 -169.99 -5.02 15.69 16 17 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 18 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 19 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 20 C 0.10 1.76 1.84 -66.59 -0.12 1.64 16 21 C -0.11 -1.95 5.13 -25.08 -0.13 -2.08 16 22 C -0.12 -1.69 6.91 -24.74 -0.17 -1.86 16 23 C -0.12 -1.60 6.83 -25.07 -0.17 -1.77 16 24 C -0.11 -1.71 5.68 -25.61 -0.15 -1.86 16 25 H 0.15 1.28 8.06 -52.49 -0.42 0.86 16 26 H 0.17 1.46 8.06 -52.48 -0.42 1.04 16 27 H 0.06 1.44 6.51 -51.93 -0.34 1.11 16 28 H 0.03 0.86 6.83 -51.93 -0.35 0.50 16 29 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 30 H 0.08 1.61 6.37 -51.92 -0.33 1.27 16 31 H 0.07 1.31 7.40 -51.93 -0.38 0.93 16 32 H 0.07 1.36 8.14 -51.93 -0.42 0.93 16 33 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 37 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 38 H 0.06 0.93 7.33 -51.93 -0.38 0.55 16 LS Contribution 320.43 15.07 4.83 4.83 Total: -1.00 -28.91 320.43 -7.55 -36.46 By element: Atomic # 1 Polarization: 3.98 SS G_CDS: -4.62 Total: -0.64 kcal Atomic # 6 Polarization: 0.75 SS G_CDS: -3.54 Total: -2.79 kcal Atomic # 7 Polarization: -52.50 SS G_CDS: 0.76 Total: -51.74 kcal Atomic # 9 Polarization: -1.84 SS G_CDS: 0.04 Total: -1.81 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -28.91 -7.55 -36.46 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166533807.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.492 kcal (2) G-P(sol) polarization free energy of solvation -28.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.456 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds