Wall clock time and date at job start Tue Mar 31 2020 06:28:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.43201 * 179.97438 * 2 1 4 4 C 1.40269 * 120.63712 * 331.73443 * 3 2 1 5 5 F 1.35100 * 120.84889 * 359.97438 * 4 3 2 6 6 C 1.38745 * 118.29891 * 179.97438 * 4 3 2 7 7 C 1.38158 * 119.47053 * 359.97438 * 6 4 3 8 8 N 1.31949 * 121.26692 * 359.97438 * 7 6 4 9 9 C 1.32381 * 121.86286 * 359.76590 * 8 7 6 10 10 N 1.38397 * 119.81976 * 180.24746 * 9 8 7 11 11 C 1.46905 * 111.00212 * 257.79126 * 10 9 8 12 12 C 1.50697 * 109.47149 * 61.47562 * 11 10 9 13 13 H 1.08005 * 120.00082 * 354.90318 * 12 11 10 14 14 C 1.37879 * 120.00101 * 174.90535 * 12 11 10 15 15 N 1.31510 * 119.99730 * 0.02562 * 14 12 11 16 16 Si 1.86802 * 120.00191 * 179.97438 * 14 12 11 17 17 H 1.48499 * 109.47002 * 59.99866 * 16 14 12 18 18 H 1.48495 * 109.47114 * 179.97438 * 16 14 12 19 19 H 1.48504 * 109.46950 * 300.00202 * 16 14 12 20 20 C 1.46900 * 111.00116 * 21.74166 * 10 9 8 21 21 C 1.54264 * 110.03836 * 181.24217 * 20 10 9 22 22 C 1.54882 * 104.19759 * 217.11003 * 21 20 10 23 23 C 1.54892 * 102.75142 * 37.93604 * 22 21 20 24 24 C 1.53880 * 110.03101 * 64.07239 * 20 10 9 25 25 H 1.07992 * 120.26504 * 179.97438 * 6 4 3 26 26 H 1.08007 * 119.36380 * 179.97438 * 7 6 4 27 27 H 1.09002 * 109.47656 * 181.47866 * 11 10 9 28 28 H 1.09002 * 109.46835 * 301.47717 * 11 10 9 29 29 H 0.97005 * 120.00013 * 179.97438 * 15 14 12 30 30 H 1.09008 * 110.01464 * 302.68625 * 20 10 9 31 31 H 1.09005 * 110.48267 * 335.78571 * 21 20 10 32 32 H 1.08996 * 110.49131 * 98.42279 * 21 20 10 33 33 H 1.09004 * 110.75389 * 279.62383 * 22 21 20 34 34 H 1.08998 * 110.92101 * 156.32800 * 22 21 20 35 35 H 1.08999 * 110.48644 * 203.38077 * 23 22 21 36 36 H 1.08997 * 110.48473 * 80.74045 * 23 22 21 37 37 H 1.08995 * 110.03061 * 238.57539 * 24 20 10 38 38 H 1.09000 * 110.02726 * 0.02562 * 24 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2833 -1.0620 0.5715 5 9 2.6388 -2.1076 1.1342 6 6 4.6695 -1.0118 0.5442 7 6 5.2991 0.0709 -0.0390 8 7 4.6073 1.0600 -0.5720 9 6 3.2835 1.0625 -0.5790 10 7 2.6003 2.1196 -1.1544 11 6 2.0832 3.0339 -0.1273 12 6 3.2336 3.6106 0.6569 13 1 4.2401 3.2652 0.4722 14 6 3.0011 4.5792 1.6103 15 7 1.7755 4.9993 1.8355 16 14 4.4270 5.2937 2.5829 17 1 5.3915 5.9315 1.6512 18 1 3.9153 6.3099 3.5371 19 1 5.1077 4.2078 3.3332 20 6 3.4502 2.8347 -2.1159 21 6 2.6781 4.0257 -2.7202 22 6 3.1405 4.0679 -4.1977 23 6 3.2523 2.5670 -4.5639 24 6 3.8153 1.9073 -3.2882 25 1 5.2518 -1.8126 0.9754 26 1 6.3784 0.1084 -0.0589 27 1 1.5284 3.8412 -0.6054 28 1 1.4223 2.4877 0.5457 29 1 1.6119 5.6805 2.5065 30 1 4.3560 3.1876 -1.6228 31 1 1.6034 3.8529 -2.6615 32 1 2.9447 4.9515 -2.2103 33 1 4.1091 4.5600 -4.2854 34 1 2.3988 4.5640 -4.8237 35 1 3.9381 2.4283 -5.3997 36 1 2.2704 2.1586 -4.8031 37 1 4.8983 1.8107 -3.3646 38 1 3.3615 0.9268 -3.1439 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166533807.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:47 Heat of formation + Delta-G solvation = 9.766084 kcal Electronic energy + Delta-G solvation = -23453.063590 eV Core-core repulsion = 20016.475043 eV Total energy + Delta-G solvation = -3436.588547 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.129 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -50.24602 -41.81147 -39.31704 -37.67838 -36.51992 -34.59123 -33.20543 -31.69725 -29.80618 -28.99292 -27.63841 -25.81590 -24.67094 -23.25781 -21.34801 -20.68074 -20.18730 -18.95823 -18.51175 -18.07401 -17.38567 -16.91753 -16.62841 -16.25897 -15.87941 -15.56648 -15.35597 -15.06641 -14.67968 -14.53281 -14.40610 -14.13183 -13.99113 -13.76275 -13.40071 -13.13466 -12.90210 -12.65466 -12.34504 -12.22406 -12.04772 -11.89122 -11.74803 -11.68529 -11.55888 -11.30703 -10.74574 -10.62999 -10.55766 -10.35173 -9.18343 -8.20306 -6.37012 -0.46491 0.04810 1.38732 1.40053 1.47991 1.54141 1.91495 2.36713 2.47773 2.74961 2.79191 3.08835 3.10362 3.62462 3.72258 3.89413 3.91098 4.00378 4.21547 4.40159 4.64525 4.67965 4.69199 4.75893 4.85789 4.89342 4.92614 5.00345 5.08966 5.16468 5.24762 5.27232 5.36639 5.42871 5.50882 5.56187 5.70515 5.85935 6.04026 6.33808 6.44938 6.78415 6.96744 7.34259 8.85263 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.010299 B = 0.008472 C = 0.006159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2717.995272 B = 3304.337546 C = 4544.842237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.456 5.456 2 C 0.285 3.715 3 C -0.161 4.161 4 C 0.196 3.804 5 F -0.123 7.123 6 C -0.217 4.217 7 C 0.184 3.816 8 N -0.526 5.526 9 C 0.411 3.589 10 N -0.496 5.496 11 C 0.215 3.785 12 C -0.551 4.551 13 H 0.079 0.921 14 C 0.015 3.985 15 N -0.927 5.927 16 Si 0.957 3.043 17 H -0.264 1.264 18 H -0.289 1.289 19 H -0.267 1.267 20 C 0.098 3.902 21 C -0.115 4.115 22 C -0.113 4.113 23 C -0.114 4.114 24 C -0.102 4.102 25 H 0.198 0.802 26 H 0.217 0.783 27 H 0.027 0.973 28 H -0.005 1.005 29 H 0.264 0.736 30 H 0.061 0.939 31 H 0.048 0.952 32 H 0.048 0.952 33 H 0.077 0.923 34 H 0.074 0.926 35 H 0.087 0.913 36 H 0.057 0.943 37 H 0.079 0.921 38 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.892 -9.585 -8.042 17.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.133 5.133 2 C -0.029 4.029 3 C -0.171 4.171 4 C 0.167 3.833 5 F -0.101 7.101 6 C -0.238 4.238 7 C 0.024 3.976 8 N -0.240 5.240 9 C 0.178 3.822 10 N -0.214 5.214 11 C 0.092 3.908 12 C -0.590 4.590 13 H 0.097 0.903 14 C -0.185 4.185 15 N -0.567 5.567 16 Si 0.782 3.218 17 H -0.189 1.189 18 H -0.214 1.214 19 H -0.192 1.192 20 C -0.009 4.009 21 C -0.154 4.154 22 C -0.151 4.151 23 C -0.152 4.152 24 C -0.140 4.140 25 H 0.216 0.784 26 H 0.234 0.766 27 H 0.045 0.955 28 H 0.013 0.987 29 H 0.073 0.927 30 H 0.079 0.921 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.096 0.904 34 H 0.093 0.907 35 H 0.105 0.895 36 H 0.076 0.924 37 H 0.097 0.903 38 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 9.963 -8.924 -8.575 15.888 hybrid contribution 0.062 0.178 1.890 1.900 sum 10.025 -8.746 -6.685 14.889 Atomic orbital electron populations 1.81082 1.12808 1.09087 1.10290 1.25252 0.92514 0.92543 0.92638 1.16789 0.85445 1.00031 1.14791 1.17961 0.91483 0.82286 0.91614 1.91547 1.82306 1.54449 1.81789 1.22363 0.90299 1.04550 1.06542 1.23602 1.02534 0.85204 0.86227 1.68098 1.05960 1.27997 1.21920 1.19555 0.87651 0.89810 0.85228 1.59915 1.34497 1.10611 1.16367 1.19486 0.94723 0.89390 0.87247 1.21989 0.94802 1.22067 1.20133 0.90283 1.25803 0.97960 0.96754 0.98004 1.70082 1.21657 1.30665 1.34259 0.85609 0.79462 0.78215 0.78501 1.18857 1.21442 1.19228 1.22153 0.94392 0.93261 0.91089 1.22353 0.99157 0.96992 0.96853 1.22433 1.01716 0.97072 0.93832 1.22306 1.00997 0.94807 0.97089 1.22112 1.01004 0.97480 0.93450 0.78449 0.76616 0.95488 0.98686 0.92710 0.92115 0.93346 0.93334 0.90395 0.90727 0.89451 0.92393 0.90252 0.93237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -20.79 18.54 19.00 0.35 -20.44 16 2 C 0.29 12.10 13.22 88.33 1.17 13.27 16 3 C -0.16 -5.91 5.69 -20.98 -0.12 -6.03 16 4 C 0.20 5.56 7.36 22.89 0.17 5.73 16 5 F -0.12 -3.47 16.91 44.97 0.76 -2.71 16 6 C -0.22 -4.20 10.08 22.37 0.23 -3.98 16 7 C 0.18 3.85 11.16 84.66 0.94 4.79 16 8 N -0.53 -16.55 7.43 -192.54 -1.43 -17.98 16 9 C 0.41 15.49 4.08 133.62 0.54 16.04 16 10 N -0.50 -20.94 3.99 -677.41 -2.70 -23.64 16 11 C 0.21 11.09 4.57 85.56 0.39 11.48 16 12 C -0.55 -29.05 7.80 25.60 0.20 -28.85 16 13 H 0.08 4.00 5.90 -2.91 -0.02 3.98 16 14 C 0.01 0.79 5.46 84.66 0.46 1.26 16 15 N -0.93 -54.71 13.29 21.45 0.28 -54.42 16 16 Si 0.96 42.60 29.54 68.60 2.03 44.62 16 17 H -0.26 -11.21 7.11 99.48 0.71 -10.51 16 18 H -0.29 -12.85 7.11 99.48 0.71 -12.15 16 19 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 20 C 0.10 3.60 1.84 45.64 0.08 3.68 16 21 C -0.12 -4.17 5.13 31.67 0.16 -4.01 16 22 C -0.11 -2.96 6.91 31.88 0.22 -2.74 16 23 C -0.11 -2.78 6.83 31.67 0.22 -2.57 16 24 C -0.10 -2.94 5.68 31.32 0.18 -2.77 16 25 H 0.20 1.98 8.06 -2.91 -0.02 1.96 16 26 H 0.22 2.31 8.06 -2.91 -0.02 2.29 16 27 H 0.03 1.52 6.51 -2.39 -0.02 1.51 16 28 H 0.00 -0.29 6.83 -2.39 -0.02 -0.30 16 29 H 0.26 14.85 8.31 -92.70 -0.77 14.08 16 30 H 0.06 2.44 6.37 -2.38 -0.02 2.42 16 31 H 0.05 1.93 7.40 -2.38 -0.02 1.91 16 32 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 33 H 0.08 1.84 8.14 -2.38 -0.02 1.82 16 34 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 35 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 36 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 37 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 38 H 0.05 1.52 7.33 -2.39 -0.02 1.50 16 Total: -1.00 -67.97 320.43 5.22 -62.75 By element: Atomic # 1 Polarization: 5.42 SS G_CDS: 1.09 Total: 6.51 kcal Atomic # 6 Polarization: 0.47 SS G_CDS: 4.84 Total: 5.31 kcal Atomic # 7 Polarization: -112.98 SS G_CDS: -3.50 Total: -116.48 kcal Atomic # 9 Polarization: -3.47 SS G_CDS: 0.76 Total: -2.71 kcal Atomic # 14 Polarization: 42.60 SS G_CDS: 2.03 Total: 44.62 kcal Total: -67.97 5.22 -62.75 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166533807.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.512 kcal (2) G-P(sol) polarization free energy of solvation -67.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.746 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds