Wall clock time and date at job start Tue Mar 31 2020 06:28:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.43203 * 179.97438 * 2 1 4 4 C 1.39975 * 120.59466 * 183.52529 * 3 2 1 5 5 C 1.38548 * 118.34363 * 179.97438 * 4 3 2 6 6 F 1.35099 * 120.27404 * 179.97438 * 5 4 3 7 7 C 1.38528 * 119.45180 * 0.02562 * 5 4 3 8 8 N 1.31900 * 121.18606 * 359.73471 * 7 5 4 9 9 C 1.32347 * 121.81035 * 0.53661 * 8 7 5 10 10 N 1.38516 * 119.79957 * 179.74968 * 9 8 7 11 11 C 1.46901 * 111.00096 * 56.37060 * 10 9 8 12 12 C 1.50699 * 109.46902 * 161.91714 * 11 10 9 13 13 H 1.08004 * 120.00369 * 0.02562 * 12 11 10 14 14 C 1.37878 * 120.00257 * 179.97438 * 12 11 10 15 15 N 1.31517 * 119.99345 * 0.02562 * 14 12 11 16 16 Si 1.86791 * 120.00339 * 180.02562 * 14 12 11 17 17 H 1.48502 * 109.47404 * 0.02562 * 16 14 12 18 18 H 1.48507 * 109.47346 * 120.00359 * 16 14 12 19 19 H 1.48504 * 109.47111 * 240.00001 * 16 14 12 20 20 C 1.46900 * 110.99948 * 292.41256 * 10 9 8 21 21 C 1.54892 * 110.48812 * 309.65657 * 20 10 9 22 22 C 1.54893 * 102.74723 * 156.61973 * 21 20 10 23 23 C 1.54267 * 104.19669 * 322.05535 * 22 21 20 24 24 C 1.53874 * 106.59880 * 23.61181 * 23 22 21 25 25 H 1.08000 * 120.83152 * 359.96286 * 4 3 2 26 26 H 1.08000 * 119.40931 * 180.02562 * 7 5 4 27 27 H 1.08994 * 109.46909 * 281.91233 * 11 10 9 28 28 H 1.08999 * 109.47327 * 41.91940 * 11 10 9 29 29 H 0.97006 * 120.00052 * 180.02562 * 15 14 12 30 30 H 1.09000 * 110.54055 * 187.03736 * 20 10 9 31 31 H 1.08999 * 110.75319 * 274.93108 * 21 20 10 32 32 H 1.08998 * 110.75585 * 38.30315 * 21 20 10 33 33 H 1.08998 * 110.49013 * 80.73420 * 22 21 20 34 34 H 1.09001 * 110.48431 * 203.37988 * 22 21 20 35 35 H 1.09001 * 110.03448 * 264.32882 * 23 22 21 36 36 H 1.09000 * 110.07450 * 142.91831 * 23 22 21 37 37 H 1.09003 * 110.03697 * 240.71511 * 24 23 22 38 38 H 1.08995 * 110.07453 * 119.30547 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2799 1.2036 0.0741 5 6 4.6644 1.1498 0.0713 6 9 5.3902 2.2871 0.1408 7 6 5.2981 -0.0796 -0.0045 8 7 4.6072 -1.2014 -0.0689 9 6 3.2838 -1.2062 -0.0747 10 7 2.6001 -2.4086 -0.1488 11 6 2.9960 -3.3074 0.9436 12 6 1.9572 -4.3868 1.1074 13 1 1.0898 -4.4037 0.4641 14 6 2.1145 -5.3535 2.0779 15 7 3.1709 -5.3332 2.8610 16 14 0.8272 -6.6918 2.2805 17 1 -0.2552 -6.4926 1.2835 18 1 1.4565 -8.0201 2.0685 19 1 0.2572 -6.6271 3.6503 20 6 2.8004 -3.0485 -1.4558 21 6 2.5160 -2.0442 -2.6003 22 6 3.3254 -2.6344 -3.7818 23 6 4.6162 -3.1680 -3.1270 24 6 4.2825 -3.4313 -1.6481 25 1 2.7629 2.1500 0.1318 26 1 6.3774 -0.1207 -0.0062 27 1 3.9585 -3.7621 0.7093 28 1 3.0785 -2.7391 1.8700 29 1 3.2818 -6.0135 3.5436 30 1 2.1636 -3.9278 -1.5528 31 1 1.4521 -2.0182 -2.8358 32 1 2.8799 -1.0500 -2.3411 33 1 2.7734 -3.4468 -4.2544 34 1 3.5598 -1.8573 -4.5094 35 1 5.4091 -2.4241 -3.2040 36 1 4.9256 -4.0946 -3.6106 37 1 4.9134 -2.8152 -1.0074 38 1 4.4292 -4.4856 -1.4135 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166535575.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:35 Heat of formation + Delta-G solvation = 33.846105 kcal Electronic energy + Delta-G solvation = -23290.917693 eV Core-core repulsion = 19855.373335 eV Total energy + Delta-G solvation = -3435.544359 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.129 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -49.03267 -40.85609 -38.04774 -36.27227 -34.91722 -32.69773 -32.60906 -30.03863 -28.44589 -27.51677 -26.07527 -24.86612 -23.19453 -21.81721 -20.17948 -19.70379 -19.15688 -17.58100 -16.60232 -16.40486 -16.06241 -15.93640 -15.64246 -14.96572 -14.58596 -14.09839 -14.00736 -13.62093 -13.24964 -13.10703 -12.95634 -12.80278 -12.45914 -12.39064 -12.16369 -11.85187 -11.48304 -11.08250 -10.93466 -10.82642 -10.72677 -10.45138 -10.34128 -10.25832 -10.03081 -9.90956 -9.51640 -9.09300 -8.68154 -8.50726 -7.79952 -6.09053 -4.10901 0.50960 0.92142 2.91990 3.05809 3.28507 3.36392 3.41317 3.70628 3.84901 4.04105 4.18268 4.42705 4.48452 4.63300 4.94084 5.01347 5.03878 5.10407 5.26999 5.40126 5.58932 5.68019 5.74076 5.88519 5.90729 5.95584 6.03379 6.16777 6.18192 6.33281 6.41369 6.59123 6.77416 6.99408 7.07849 7.24922 7.67892 7.69302 7.80164 7.87154 8.00620 8.36237 8.95328 9.53107 11.01354 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.014232 B = 0.005980 C = 0.005433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1966.905252 B = 4680.991759 C = 5152.440492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.404 5.404 2 C 0.276 3.724 3 C -0.039 4.039 4 C -0.061 4.061 5 C 0.025 3.975 6 F -0.130 7.130 7 C 0.115 3.885 8 N -0.472 5.472 9 C 0.369 3.631 10 N -0.492 5.492 11 C 0.201 3.799 12 C -0.509 4.509 13 H 0.065 0.935 14 C 0.059 3.941 15 N -0.894 5.894 16 Si 0.897 3.103 17 H -0.272 1.272 18 H -0.284 1.284 19 H -0.284 1.284 20 C 0.101 3.899 21 C -0.126 4.126 22 C -0.121 4.121 23 C -0.117 4.117 24 C -0.172 4.172 25 H 0.155 0.845 26 H 0.170 0.830 27 H 0.023 0.977 28 H 0.027 0.973 29 H 0.262 0.738 30 H 0.102 0.898 31 H 0.067 0.933 32 H 0.058 0.942 33 H 0.065 0.935 34 H 0.058 0.942 35 H 0.054 0.946 36 H 0.056 0.944 37 H 0.109 0.891 38 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.592 11.013 -9.484 15.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.079 5.079 2 C -0.040 4.040 3 C -0.047 4.047 4 C -0.090 4.090 5 C 0.003 3.997 6 F -0.109 7.109 7 C -0.047 4.047 8 N -0.183 5.183 9 C 0.139 3.861 10 N -0.215 5.215 11 C 0.079 3.921 12 C -0.548 4.548 13 H 0.083 0.917 14 C -0.143 4.143 15 N -0.533 5.533 16 Si 0.725 3.275 17 H -0.196 1.196 18 H -0.210 1.210 19 H -0.210 1.210 20 C -0.006 4.006 21 C -0.164 4.164 22 C -0.159 4.159 23 C -0.155 4.155 24 C -0.211 4.211 25 H 0.173 0.827 26 H 0.187 0.813 27 H 0.041 0.959 28 H 0.045 0.955 29 H 0.071 0.929 30 H 0.120 0.880 31 H 0.085 0.915 32 H 0.076 0.924 33 H 0.083 0.917 34 H 0.077 0.923 35 H 0.073 0.927 36 H 0.075 0.925 37 H 0.127 0.873 38 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 3.845 10.212 -9.294 14.334 hybrid contribution 0.358 -0.023 0.331 0.488 sum 4.203 10.190 -8.963 14.207 Atomic orbital electron populations 1.81159 1.11626 1.07425 1.07714 1.24731 0.91683 0.93430 0.94192 1.16589 0.86481 0.93079 1.08509 1.21519 0.92382 0.98632 0.96514 1.18385 0.89482 0.83677 1.08129 1.91523 1.77045 1.48224 1.94110 1.23094 1.01512 0.86091 0.94003 1.68297 1.08786 1.28361 1.12833 1.20383 0.86010 0.92333 0.87404 1.60489 1.51992 1.03037 1.05947 1.19870 0.96613 0.89703 0.85943 1.21104 1.06950 1.09337 1.17421 0.91722 1.24938 0.95767 0.97976 0.95607 1.69967 1.27737 1.35054 1.20589 0.86445 0.81546 0.81416 0.78076 1.19612 1.20999 1.20995 1.22507 0.96051 0.96506 0.85523 1.22696 1.00011 0.98353 0.95342 1.22302 0.96614 0.99846 0.97143 1.22045 0.96986 1.00060 0.96449 1.23250 0.98243 1.03338 0.96302 0.82747 0.81312 0.95913 0.95491 0.92861 0.88001 0.91459 0.92359 0.91666 0.92296 0.92681 0.92512 0.87274 0.91659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.40 -7.51 18.54 41.84 0.78 -6.74 16 2 C 0.28 4.67 14.85 -22.47 -0.33 4.33 16 3 C -0.04 -0.59 5.18 -106.46 -0.55 -1.14 16 4 C -0.06 -0.71 9.89 -38.82 -0.38 -1.10 16 5 C 0.03 0.28 7.32 -39.36 -0.29 -0.01 16 6 F -0.13 -1.40 17.28 2.25 0.04 -1.36 16 7 C 0.11 1.39 11.15 -17.42 -0.19 1.20 16 8 N -0.47 -7.46 6.86 -12.11 -0.08 -7.54 16 9 C 0.37 6.37 3.53 -155.01 -0.55 5.83 16 10 N -0.49 -9.95 3.90 -164.84 -0.64 -10.59 16 11 C 0.20 4.95 4.25 -4.98 -0.02 4.93 16 12 C -0.51 -13.80 8.71 -34.44 -0.30 -14.10 16 13 H 0.06 1.76 7.67 -52.48 -0.40 1.36 16 14 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 15 N -0.89 -25.80 13.29 55.43 0.74 -25.06 16 16 Si 0.90 21.40 29.54 -169.99 -5.02 16.38 16 17 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 18 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 19 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 20 C 0.10 1.83 2.89 -66.05 -0.19 1.64 16 21 C -0.13 -1.89 6.26 -24.73 -0.15 -2.04 16 22 C -0.12 -1.55 6.83 -25.07 -0.17 -1.72 16 23 C -0.12 -1.59 6.80 -25.61 -0.17 -1.77 16 24 C -0.17 -2.92 4.79 -25.61 -0.12 -3.04 16 25 H 0.15 1.35 8.06 -52.49 -0.42 0.92 16 26 H 0.17 1.55 8.06 -52.49 -0.42 1.12 16 27 H 0.02 0.59 6.53 -51.93 -0.34 0.25 16 28 H 0.03 0.73 7.94 -51.93 -0.41 0.32 16 29 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 30 H 0.10 2.02 7.61 -51.93 -0.40 1.62 16 31 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 32 H 0.06 0.86 6.08 -51.93 -0.32 0.54 16 33 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.11 1.93 4.51 -51.93 -0.23 1.69 16 38 H 0.06 1.21 8.12 -51.93 -0.42 0.78 16 LS Contribution 322.21 15.07 4.86 4.86 Total: -1.00 -29.46 322.21 -7.49 -36.94 By element: Atomic # 1 Polarization: 3.18 SS G_CDS: -4.61 Total: -1.43 kcal Atomic # 6 Polarization: -1.93 SS G_CDS: -3.53 Total: -5.46 kcal Atomic # 7 Polarization: -50.72 SS G_CDS: 0.79 Total: -49.93 kcal Atomic # 9 Polarization: -1.40 SS G_CDS: 0.04 Total: -1.36 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -29.46 -7.49 -36.94 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166535575.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.789 kcal (2) G-P(sol) polarization free energy of solvation -29.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.943 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds