Wall clock time and date at job start Tue Mar 31 2020 06:28:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.43203 * 179.97438 * 2 1 4 4 C 1.39975 * 120.59466 * 183.52529 * 3 2 1 5 5 C 1.38548 * 118.34363 * 179.97438 * 4 3 2 6 6 F 1.35099 * 120.27404 * 179.97438 * 5 4 3 7 7 C 1.38528 * 119.45180 * 0.02562 * 5 4 3 8 8 N 1.31900 * 121.18606 * 359.73471 * 7 5 4 9 9 C 1.32347 * 121.81035 * 0.53661 * 8 7 5 10 10 N 1.38516 * 119.79957 * 179.74968 * 9 8 7 11 11 C 1.46901 * 111.00096 * 56.37060 * 10 9 8 12 12 C 1.50699 * 109.46902 * 161.91714 * 11 10 9 13 13 H 1.08004 * 120.00369 * 0.02562 * 12 11 10 14 14 C 1.37878 * 120.00257 * 179.97438 * 12 11 10 15 15 N 1.31517 * 119.99345 * 0.02562 * 14 12 11 16 16 Si 1.86791 * 120.00339 * 180.02562 * 14 12 11 17 17 H 1.48502 * 109.47404 * 0.02562 * 16 14 12 18 18 H 1.48507 * 109.47346 * 120.00359 * 16 14 12 19 19 H 1.48504 * 109.47111 * 240.00001 * 16 14 12 20 20 C 1.46900 * 110.99948 * 292.41256 * 10 9 8 21 21 C 1.54892 * 110.48812 * 309.65657 * 20 10 9 22 22 C 1.54893 * 102.74723 * 156.61973 * 21 20 10 23 23 C 1.54267 * 104.19669 * 322.05535 * 22 21 20 24 24 C 1.53874 * 106.59880 * 23.61181 * 23 22 21 25 25 H 1.08000 * 120.83152 * 359.96286 * 4 3 2 26 26 H 1.08000 * 119.40931 * 180.02562 * 7 5 4 27 27 H 1.08994 * 109.46909 * 281.91233 * 11 10 9 28 28 H 1.08999 * 109.47327 * 41.91940 * 11 10 9 29 29 H 0.97006 * 120.00052 * 180.02562 * 15 14 12 30 30 H 1.09000 * 110.54055 * 187.03736 * 20 10 9 31 31 H 1.08999 * 110.75319 * 274.93108 * 21 20 10 32 32 H 1.08998 * 110.75585 * 38.30315 * 21 20 10 33 33 H 1.08998 * 110.49013 * 80.73420 * 22 21 20 34 34 H 1.09001 * 110.48431 * 203.37988 * 22 21 20 35 35 H 1.09001 * 110.03448 * 264.32882 * 23 22 21 36 36 H 1.09000 * 110.07450 * 142.91831 * 23 22 21 37 37 H 1.09003 * 110.03697 * 240.71511 * 24 23 22 38 38 H 1.08995 * 110.07453 * 119.30547 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2799 1.2036 0.0741 5 6 4.6644 1.1498 0.0713 6 9 5.3902 2.2871 0.1408 7 6 5.2981 -0.0796 -0.0045 8 7 4.6072 -1.2014 -0.0689 9 6 3.2838 -1.2062 -0.0747 10 7 2.6001 -2.4086 -0.1488 11 6 2.9960 -3.3074 0.9436 12 6 1.9572 -4.3868 1.1074 13 1 1.0898 -4.4037 0.4641 14 6 2.1145 -5.3535 2.0779 15 7 3.1709 -5.3332 2.8610 16 14 0.8272 -6.6918 2.2805 17 1 -0.2552 -6.4926 1.2835 18 1 1.4565 -8.0201 2.0685 19 1 0.2572 -6.6271 3.6503 20 6 2.8004 -3.0485 -1.4558 21 6 2.5160 -2.0442 -2.6003 22 6 3.3254 -2.6344 -3.7818 23 6 4.6162 -3.1680 -3.1270 24 6 4.2825 -3.4313 -1.6481 25 1 2.7629 2.1500 0.1318 26 1 6.3774 -0.1207 -0.0062 27 1 3.9585 -3.7621 0.7093 28 1 3.0785 -2.7391 1.8700 29 1 3.2818 -6.0135 3.5436 30 1 2.1636 -3.9278 -1.5528 31 1 1.4521 -2.0182 -2.8358 32 1 2.8799 -1.0500 -2.3411 33 1 2.7734 -3.4468 -4.2544 34 1 3.5598 -1.8573 -4.5094 35 1 5.4091 -2.4241 -3.2040 36 1 4.9256 -4.0946 -3.6106 37 1 4.9134 -2.8152 -1.0074 38 1 4.4292 -4.4856 -1.4135 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166535575.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:34 Heat of formation + Delta-G solvation = 17.638828 kcal Electronic energy + Delta-G solvation = -23291.620494 eV Core-core repulsion = 19855.373335 eV Total energy + Delta-G solvation = -3436.247159 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.129 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -49.95916 -42.10178 -39.31005 -37.61757 -36.35413 -34.61538 -33.81847 -31.34899 -29.74351 -29.11401 -27.59859 -25.95622 -24.79229 -23.35390 -21.34957 -21.02069 -20.31855 -18.74888 -18.33526 -17.66262 -17.47369 -17.25044 -16.68605 -16.47004 -16.05550 -15.39074 -15.07115 -14.93746 -14.54222 -14.51027 -14.29980 -14.19682 -13.91868 -13.74983 -13.62620 -13.35376 -12.93874 -12.86122 -12.69621 -12.31296 -12.06285 -11.91936 -11.79400 -11.60712 -11.46597 -11.37027 -11.00341 -10.63486 -10.39708 -9.82016 -9.39374 -8.22620 -6.31588 -0.61037 -0.13573 1.37365 1.38857 1.51404 1.60707 1.84901 2.35865 2.54442 2.64952 2.76963 3.10621 3.11814 3.37143 3.68866 3.73124 3.84226 3.92226 4.02554 4.19242 4.49842 4.56980 4.62408 4.65617 4.70501 4.74455 4.82938 4.98983 5.08604 5.10047 5.24622 5.26134 5.33546 5.35661 5.51495 5.61001 5.71183 6.02895 6.12368 6.39914 6.59890 6.68704 6.82072 7.36781 8.87964 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.014232 B = 0.005980 C = 0.005433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1966.905252 B = 4680.991759 C = 5152.440492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.443 5.443 2 C 0.291 3.709 3 C -0.051 4.051 4 C -0.040 4.040 5 C 0.047 3.953 6 F -0.118 7.118 7 C 0.121 3.879 8 N -0.495 5.495 9 C 0.344 3.656 10 N -0.503 5.503 11 C 0.227 3.773 12 C -0.523 4.523 13 H 0.055 0.945 14 C 0.010 3.990 15 N -0.927 5.927 16 Si 0.961 3.039 17 H -0.269 1.269 18 H -0.275 1.275 19 H -0.279 1.279 20 C 0.094 3.906 21 C -0.116 4.116 22 C -0.113 4.113 23 C -0.109 4.109 24 C -0.169 4.169 25 H 0.190 0.810 26 H 0.202 0.798 27 H 0.001 0.999 28 H -0.006 1.006 29 H 0.265 0.735 30 H 0.071 0.929 31 H 0.063 0.937 32 H 0.064 0.936 33 H 0.070 0.930 34 H 0.085 0.915 35 H 0.070 0.930 36 H 0.065 0.935 37 H 0.104 0.896 38 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.455 12.772 -10.788 17.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.118 5.118 2 C -0.025 4.025 3 C -0.058 4.058 4 C -0.069 4.069 5 C 0.025 3.975 6 F -0.097 7.097 7 C -0.040 4.040 8 N -0.206 5.206 9 C 0.114 3.886 10 N -0.225 5.225 11 C 0.102 3.898 12 C -0.562 4.562 13 H 0.073 0.927 14 C -0.189 4.189 15 N -0.567 5.567 16 Si 0.786 3.214 17 H -0.193 1.193 18 H -0.200 1.200 19 H -0.205 1.205 20 C -0.013 4.013 21 C -0.154 4.154 22 C -0.151 4.151 23 C -0.147 4.147 24 C -0.208 4.208 25 H 0.207 0.793 26 H 0.219 0.781 27 H 0.019 0.981 28 H 0.012 0.988 29 H 0.074 0.926 30 H 0.089 0.911 31 H 0.082 0.918 32 H 0.083 0.917 33 H 0.088 0.912 34 H 0.104 0.896 35 H 0.089 0.911 36 H 0.084 0.916 37 H 0.122 0.878 38 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 4.708 11.990 -10.619 16.694 hybrid contribution 0.216 -0.447 0.758 0.906 sum 4.924 11.543 -9.861 15.960 Atomic orbital electron populations 1.81159 1.12719 1.08619 1.09333 1.25034 0.92057 0.92352 0.93052 1.16560 0.85493 0.93617 1.10144 1.21786 0.92484 0.98554 0.94037 1.18249 0.89278 0.83646 1.06348 1.91572 1.76741 1.47551 1.93797 1.23594 1.02812 0.85405 0.92205 1.68182 1.08191 1.30306 1.13906 1.20193 0.86862 0.91497 0.90010 1.60221 1.53240 1.03511 1.05524 1.19295 0.94856 0.89351 0.86265 1.21386 1.07157 1.10389 1.17225 0.92663 1.25749 0.97690 1.00156 0.95299 1.70071 1.29386 1.36011 1.21206 0.85457 0.79081 0.78845 0.78002 1.19334 1.20020 1.20513 1.22524 0.96277 0.96588 0.85906 1.22612 1.00273 0.97763 0.94721 1.22295 0.95583 1.00641 0.96545 1.21997 0.97898 1.01101 0.93739 1.23163 0.97469 1.01197 0.98999 0.79274 0.78099 0.98111 0.98793 0.92629 0.91075 0.91841 0.91747 0.91165 0.89607 0.91103 0.91591 0.87772 0.94654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -16.57 18.54 19.00 0.35 -16.21 16 2 C 0.29 9.76 14.85 88.33 1.31 11.07 16 3 C -0.05 -1.47 5.18 -21.06 -0.11 -1.58 16 4 C -0.04 -0.80 9.89 22.76 0.23 -0.58 16 5 C 0.05 0.88 7.32 22.41 0.16 1.04 16 6 F -0.12 -2.00 17.28 44.97 0.78 -1.22 16 7 C 0.12 2.61 11.15 84.75 0.95 3.56 16 8 N -0.49 -15.29 6.86 -192.22 -1.32 -16.61 16 9 C 0.34 11.91 3.53 133.58 0.47 12.38 16 10 N -0.50 -21.17 3.90 -675.42 -2.64 -23.81 16 11 C 0.23 11.79 4.25 85.56 0.36 12.15 16 12 C -0.52 -29.68 8.71 25.60 0.22 -29.46 16 13 H 0.06 3.16 7.67 -2.91 -0.02 3.14 16 14 C 0.01 0.56 5.46 84.65 0.46 1.02 16 15 N -0.93 -55.12 13.29 21.45 0.28 -54.84 16 16 Si 0.96 44.89 29.54 68.60 2.03 46.91 16 17 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 18 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 19 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 20 C 0.09 3.52 2.89 45.99 0.13 3.65 16 21 C -0.12 -3.38 6.26 31.89 0.20 -3.18 16 22 C -0.11 -2.65 6.83 31.67 0.22 -2.43 16 23 C -0.11 -2.80 6.80 31.32 0.21 -2.59 16 24 C -0.17 -5.88 4.79 31.32 0.15 -5.73 16 25 H 0.19 2.46 8.06 -2.91 -0.02 2.43 16 26 H 0.20 2.94 8.06 -2.91 -0.02 2.92 16 27 H 0.00 0.06 6.53 -2.39 -0.02 0.04 16 28 H -0.01 -0.35 7.94 -2.39 -0.02 -0.37 16 29 H 0.26 14.81 8.31 -92.70 -0.77 14.04 16 30 H 0.07 3.02 7.61 -2.39 -0.02 3.00 16 31 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 32 H 0.06 1.81 6.08 -2.39 -0.01 1.79 16 33 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 34 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 35 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 36 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 37 H 0.10 3.75 4.51 -2.39 -0.01 3.74 16 38 H 0.03 1.38 8.12 -2.39 -0.02 1.36 16 Total: -1.00 -67.09 322.21 5.54 -61.55 By element: Atomic # 1 Polarization: 3.82 SS G_CDS: 1.09 Total: 4.90 kcal Atomic # 6 Polarization: -5.64 SS G_CDS: 4.97 Total: -0.67 kcal Atomic # 7 Polarization: -108.15 SS G_CDS: -3.32 Total: -111.47 kcal Atomic # 9 Polarization: -2.00 SS G_CDS: 0.78 Total: -1.22 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.91 kcal Total: -67.09 5.54 -61.55 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166535575.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.188 kcal (2) G-P(sol) polarization free energy of solvation -67.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.549 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds