Wall clock time and date at job start Tue Mar 31 2020 06:28:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13604 * 1 3 3 C 1.43194 * 179.97438 * 2 1 4 4 C 1.40236 * 120.90584 * 65.15087 * 3 2 1 5 5 C 1.37759 * 119.18633 * 180.02562 * 4 3 2 6 6 N 1.32028 * 121.07075 * 359.71647 * 5 4 3 7 7 C 1.32264 * 122.01000 * 0.57324 * 6 5 4 8 8 N 1.39148 * 119.66069 * 179.70262 * 7 6 5 9 9 C 1.46902 * 111.00336 * 235.77612 * 8 7 6 10 10 C 1.50695 * 109.47197 * 65.37841 * 9 8 7 11 11 H 1.08001 * 119.99656 * 355.28235 * 10 9 8 12 12 C 1.37878 * 120.00143 * 175.28094 * 10 9 8 13 13 N 1.31513 * 119.99564 * 0.02562 * 12 10 9 14 14 Si 1.86797 * 119.99921 * 180.02562 * 12 10 9 15 15 H 1.48497 * 109.47324 * 59.99838 * 14 12 10 16 16 H 1.48500 * 109.46959 * 180.02562 * 14 12 10 17 17 H 1.48498 * 109.47300 * 299.99733 * 14 12 10 18 18 C 1.46897 * 111.00000 * 359.73346 * 8 7 6 19 19 C 1.54272 * 110.03461 * 184.24551 * 18 8 7 20 20 C 1.54889 * 104.19820 * 217.10370 * 19 18 8 21 21 C 1.54886 * 102.74546 * 37.93964 * 20 19 18 22 22 C 1.53877 * 110.03652 * 67.07829 * 18 8 7 23 23 C 1.39335 * 120.67953 * 359.42955 * 7 6 5 24 24 F 1.35100 * 120.56551 * 180.24751 * 23 7 6 25 25 H 1.07996 * 120.40299 * 359.97438 * 4 3 2 26 26 H 1.07994 * 119.46072 * 179.97438 * 5 4 3 27 27 H 1.09000 * 109.46893 * 305.37601 * 9 8 7 28 28 H 1.09000 * 109.46839 * 185.38352 * 9 8 7 29 29 H 0.97004 * 119.99795 * 180.02562 * 13 12 10 30 30 H 1.08999 * 110.01840 * 305.68458 * 18 8 7 31 31 H 1.09005 * 110.48315 * 335.78394 * 19 18 8 32 32 H 1.08999 * 110.48455 * 98.42198 * 19 18 8 33 33 H 1.09003 * 110.75148 * 279.62637 * 20 19 18 34 34 H 1.09000 * 110.91457 * 156.33114 * 20 19 18 35 35 H 1.09001 * 110.48390 * 203.38036 * 21 20 19 36 36 H 1.09000 * 110.49091 * 80.74213 * 21 20 19 37 37 H 1.09004 * 110.03021 * 238.57009 * 22 18 8 38 38 H 1.09002 * 110.02798 * 359.97438 * 22 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2885 -0.5047 -1.0918 5 6 4.6655 -0.4872 -1.0541 6 7 5.3124 0.0013 -0.0120 7 6 4.6783 0.4839 1.0436 8 7 5.4093 0.9813 2.1181 9 6 5.0342 0.3062 3.3677 10 6 5.4264 -1.1468 3.2910 11 1 5.8364 -1.5478 2.3758 12 6 5.2619 -1.9642 4.3890 13 7 4.7623 -1.4759 5.5032 14 14 5.7488 -3.7651 4.2941 15 1 7.1968 -3.8707 3.9819 16 1 5.4737 -4.4216 5.5973 17 1 4.9624 -4.4350 3.2273 18 6 6.8528 0.8669 1.8707 19 6 7.6403 1.3250 3.1157 20 6 8.8762 2.0564 2.5356 21 6 8.2905 2.7953 1.3069 22 6 7.2663 1.8018 0.7206 23 6 3.2858 0.5047 1.0885 24 9 2.6405 1.0028 2.1658 25 1 2.7702 -0.9034 -1.9513 26 1 5.2247 -0.8756 -1.8923 27 1 3.9569 0.3845 3.5137 28 1 5.5494 0.7780 4.2044 29 1 4.6469 -2.0509 6.2759 30 1 7.1087 -0.1636 1.6246 31 1 7.0400 2.0081 3.7167 32 1 7.9498 0.4647 3.7091 33 1 9.6394 1.3412 2.2286 34 1 9.2819 2.7664 3.2562 35 1 9.0745 3.0081 0.5802 36 1 7.7953 3.7160 1.6156 37 1 7.7235 1.2250 -0.0834 38 1 6.3957 2.3401 0.3457 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166535827.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:44 Heat of formation + Delta-G solvation = 30.626830 kcal Electronic energy + Delta-G solvation = -23450.945161 eV Core-core repulsion = 20015.261204 eV Total energy + Delta-G solvation = -3435.683957 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.129 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -48.60588 -40.28401 -38.20017 -36.55308 -35.06497 -32.77816 -32.10424 -29.91765 -28.36311 -27.45123 -26.13631 -24.33029 -23.40490 -21.79433 -20.16987 -19.67482 -18.31254 -17.31543 -16.99218 -16.55419 -15.82629 -15.40688 -15.23816 -14.71780 -14.57592 -14.15327 -13.72877 -13.57562 -13.41784 -13.25492 -12.87320 -12.82143 -12.74642 -12.31700 -12.07905 -11.40131 -11.27988 -10.99693 -10.78516 -10.69353 -10.55785 -10.44587 -10.33028 -10.16171 -9.96598 -9.93642 -9.52936 -9.37456 -8.88048 -8.54621 -7.43090 -6.17968 -4.26816 0.72063 1.28276 2.60521 3.08616 3.22220 3.27812 3.29953 3.66543 3.90170 4.16169 4.30803 4.54053 4.74221 4.93759 5.07909 5.16715 5.18770 5.23191 5.41825 5.64546 5.87584 5.92881 5.94834 6.01087 6.08419 6.15702 6.25045 6.29269 6.33050 6.52544 6.55707 6.74006 6.85580 6.89966 7.06554 7.31390 7.41766 7.46014 7.74177 7.92889 7.98135 8.24328 8.79450 9.39920 10.88366 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.010577 B = 0.008394 C = 0.005704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2646.541953 B = 3334.863718 C = 4907.724289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.405 5.405 2 C 0.263 3.737 3 C -0.003 4.003 4 C -0.158 4.158 5 C 0.119 3.881 6 N -0.483 5.483 7 C 0.343 3.657 8 N -0.472 5.472 9 C 0.175 3.825 10 C -0.554 4.554 11 H 0.061 0.939 12 C 0.071 3.929 13 N -0.884 5.884 14 Si 0.891 3.109 15 H -0.274 1.274 16 H -0.285 1.285 17 H -0.276 1.276 18 C 0.105 3.895 19 C -0.113 4.113 20 C -0.124 4.124 21 C -0.124 4.124 22 C -0.104 4.104 23 C 0.083 3.917 24 F -0.110 7.110 25 H 0.144 0.856 26 H 0.165 0.835 27 H 0.050 0.950 28 H 0.056 0.944 29 H 0.266 0.734 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.073 0.927 33 H 0.062 0.938 34 H 0.060 0.940 35 H 0.055 0.945 36 H 0.060 0.940 37 H 0.064 0.936 38 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.552 4.582 -11.035 12.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.081 5.081 2 C -0.052 4.052 3 C -0.015 4.015 4 C -0.182 4.182 5 C -0.038 4.038 6 N -0.197 5.197 7 C 0.107 3.893 8 N -0.187 5.187 9 C 0.053 3.947 10 C -0.592 4.592 11 H 0.079 0.921 12 C -0.133 4.133 13 N -0.521 5.521 14 Si 0.718 3.282 15 H -0.200 1.200 16 H -0.211 1.211 17 H -0.202 1.202 18 C -0.002 4.002 19 C -0.150 4.150 20 C -0.162 4.162 21 C -0.161 4.161 22 C -0.142 4.142 23 C 0.055 3.945 24 F -0.088 7.088 25 H 0.162 0.838 26 H 0.182 0.818 27 H 0.068 0.932 28 H 0.074 0.926 29 H 0.075 0.925 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.091 0.909 33 H 0.080 0.920 34 H 0.078 0.922 35 H 0.074 0.926 36 H 0.079 0.921 37 H 0.082 0.918 38 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 3.557 5.092 -10.636 12.317 hybrid contribution -0.312 -1.752 0.236 1.795 sum 3.245 3.339 -10.400 11.395 Atomic orbital electron populations 1.81194 1.11670 1.07940 1.07250 1.25204 0.92170 0.93985 0.93891 1.16095 0.85108 1.04293 0.96001 1.21743 0.95228 1.03204 0.97982 1.22460 0.90837 0.94786 0.95708 1.67782 1.39755 1.10827 1.01354 1.19919 0.87917 0.89047 0.92422 1.59834 1.06354 1.49754 1.02800 1.20296 0.98874 0.92038 0.83452 1.21590 1.44260 0.94534 0.98863 0.92054 1.24894 0.94592 0.98653 0.95142 1.69920 1.43521 1.36256 1.02446 0.86667 0.79230 0.84894 0.77414 1.19975 1.21090 1.20189 1.22020 0.84495 0.99383 0.94303 1.22406 0.95212 1.00343 0.97084 1.22473 0.97743 0.98827 0.97122 1.22364 0.98050 0.98495 0.97225 1.22110 0.98074 0.96558 0.97455 1.18078 0.90052 1.01661 0.84726 1.91514 1.81052 1.84370 1.51905 0.83844 0.81780 0.93162 0.92594 0.92470 0.90978 0.91030 0.90869 0.91951 0.92167 0.92587 0.92116 0.91765 0.92227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.40 -7.04 18.54 41.84 0.78 -6.26 16 2 C 0.26 4.26 15.10 -22.47 -0.34 3.92 16 3 C 0.00 -0.05 5.76 -106.64 -0.61 -0.66 16 4 C -0.16 -1.92 9.85 -39.01 -0.38 -2.30 16 5 C 0.12 1.50 11.16 -17.64 -0.20 1.30 16 6 N -0.48 -7.91 7.59 -12.43 -0.09 -8.00 16 7 C 0.34 6.45 4.87 -154.92 -0.75 5.70 16 8 N -0.47 -9.49 4.48 -165.65 -0.74 -10.23 16 9 C 0.18 4.17 4.42 -4.98 -0.02 4.15 16 10 C -0.55 -14.14 7.83 -34.44 -0.27 -14.41 16 11 H 0.06 1.58 6.51 -52.49 -0.34 1.24 16 12 C 0.07 1.89 5.46 -17.82 -0.10 1.80 16 13 N -0.88 -24.67 13.29 55.43 0.74 -23.93 16 14 Si 0.89 20.68 29.54 -169.99 -5.02 15.66 16 15 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 16 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 17 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 18 C 0.11 1.90 1.72 -66.59 -0.11 1.79 16 19 C -0.11 -1.95 5.16 -25.07 -0.13 -2.08 16 20 C -0.12 -1.70 6.91 -24.74 -0.17 -1.87 16 21 C -0.12 -1.63 6.83 -25.08 -0.17 -1.80 16 22 C -0.10 -1.57 5.16 -25.61 -0.13 -1.70 16 23 C 0.08 1.54 6.96 -38.59 -0.27 1.27 16 24 F -0.11 -2.26 14.40 2.25 0.03 -2.23 16 25 H 0.14 1.25 8.06 -52.49 -0.42 0.83 16 26 H 0.17 1.41 8.06 -52.49 -0.42 0.99 16 27 H 0.05 1.30 5.57 -51.93 -0.29 1.01 16 28 H 0.06 1.41 6.48 -51.93 -0.34 1.07 16 29 H 0.27 7.09 8.31 -40.82 -0.34 6.76 16 30 H 0.07 1.45 6.47 -51.93 -0.34 1.12 16 31 H 0.07 1.30 7.18 -51.93 -0.37 0.93 16 32 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 33 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.06 0.94 7.39 -51.93 -0.38 0.56 16 LS Contribution 319.22 15.07 4.81 4.81 Total: -1.00 -28.17 319.22 -7.75 -35.91 By element: Atomic # 1 Polarization: 3.74 SS G_CDS: -4.58 Total: -0.83 kcal Atomic # 6 Polarization: -1.23 SS G_CDS: -3.66 Total: -4.89 kcal Atomic # 7 Polarization: -49.10 SS G_CDS: 0.68 Total: -48.42 kcal Atomic # 9 Polarization: -2.26 SS G_CDS: 0.03 Total: -2.23 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -28.17 -7.75 -35.91 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166535827.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.541 kcal (2) G-P(sol) polarization free energy of solvation -28.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.914 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds