Wall clock time and date at job start Tue Mar 31 2020 06:28:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13604 * 1 3 3 C 1.43194 * 179.97438 * 2 1 4 4 C 1.40236 * 120.90584 * 65.15087 * 3 2 1 5 5 C 1.37759 * 119.18633 * 180.02562 * 4 3 2 6 6 N 1.32028 * 121.07075 * 359.71647 * 5 4 3 7 7 C 1.32264 * 122.01000 * 0.57324 * 6 5 4 8 8 N 1.39148 * 119.66069 * 179.70262 * 7 6 5 9 9 C 1.46902 * 111.00336 * 235.77612 * 8 7 6 10 10 C 1.50695 * 109.47197 * 65.37841 * 9 8 7 11 11 H 1.08001 * 119.99656 * 355.28235 * 10 9 8 12 12 C 1.37878 * 120.00143 * 175.28094 * 10 9 8 13 13 N 1.31513 * 119.99564 * 0.02562 * 12 10 9 14 14 Si 1.86797 * 119.99921 * 180.02562 * 12 10 9 15 15 H 1.48497 * 109.47324 * 59.99838 * 14 12 10 16 16 H 1.48500 * 109.46959 * 180.02562 * 14 12 10 17 17 H 1.48498 * 109.47300 * 299.99733 * 14 12 10 18 18 C 1.46897 * 111.00000 * 359.73346 * 8 7 6 19 19 C 1.54272 * 110.03461 * 184.24551 * 18 8 7 20 20 C 1.54889 * 104.19820 * 217.10370 * 19 18 8 21 21 C 1.54886 * 102.74546 * 37.93964 * 20 19 18 22 22 C 1.53877 * 110.03652 * 67.07829 * 18 8 7 23 23 C 1.39335 * 120.67953 * 359.42955 * 7 6 5 24 24 F 1.35100 * 120.56551 * 180.24751 * 23 7 6 25 25 H 1.07996 * 120.40299 * 359.97438 * 4 3 2 26 26 H 1.07994 * 119.46072 * 179.97438 * 5 4 3 27 27 H 1.09000 * 109.46893 * 305.37601 * 9 8 7 28 28 H 1.09000 * 109.46839 * 185.38352 * 9 8 7 29 29 H 0.97004 * 119.99795 * 180.02562 * 13 12 10 30 30 H 1.08999 * 110.01840 * 305.68458 * 18 8 7 31 31 H 1.09005 * 110.48315 * 335.78394 * 19 18 8 32 32 H 1.08999 * 110.48455 * 98.42198 * 19 18 8 33 33 H 1.09003 * 110.75148 * 279.62637 * 20 19 18 34 34 H 1.09000 * 110.91457 * 156.33114 * 20 19 18 35 35 H 1.09001 * 110.48390 * 203.38036 * 21 20 19 36 36 H 1.09000 * 110.49091 * 80.74213 * 21 20 19 37 37 H 1.09004 * 110.03021 * 238.57009 * 22 18 8 38 38 H 1.09002 * 110.02798 * 359.97438 * 22 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2885 -0.5047 -1.0918 5 6 4.6655 -0.4872 -1.0541 6 7 5.3124 0.0013 -0.0120 7 6 4.6783 0.4839 1.0436 8 7 5.4093 0.9813 2.1181 9 6 5.0342 0.3062 3.3677 10 6 5.4264 -1.1468 3.2910 11 1 5.8364 -1.5478 2.3758 12 6 5.2619 -1.9642 4.3890 13 7 4.7623 -1.4759 5.5032 14 14 5.7488 -3.7651 4.2941 15 1 7.1968 -3.8707 3.9819 16 1 5.4737 -4.4216 5.5973 17 1 4.9624 -4.4350 3.2273 18 6 6.8528 0.8669 1.8707 19 6 7.6403 1.3250 3.1157 20 6 8.8762 2.0564 2.5356 21 6 8.2905 2.7953 1.3069 22 6 7.2663 1.8018 0.7206 23 6 3.2858 0.5047 1.0885 24 9 2.6405 1.0028 2.1658 25 1 2.7702 -0.9034 -1.9513 26 1 5.2247 -0.8756 -1.8923 27 1 3.9569 0.3845 3.5137 28 1 5.5494 0.7780 4.2044 29 1 4.6469 -2.0509 6.2759 30 1 7.1087 -0.1636 1.6246 31 1 7.0400 2.0081 3.7167 32 1 7.9498 0.4647 3.7091 33 1 9.6394 1.3412 2.2286 34 1 9.2819 2.7664 3.2562 35 1 9.0745 3.0081 0.5802 36 1 7.7953 3.7160 1.6156 37 1 7.7235 1.2250 -0.0834 38 1 6.3957 2.3401 0.3457 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166535827.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:43 Heat of formation + Delta-G solvation = 15.063775 kcal Electronic energy + Delta-G solvation = -23451.620026 eV Core-core repulsion = 20015.261204 eV Total energy + Delta-G solvation = -3436.358822 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.129 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -50.05695 -41.59738 -39.52877 -37.87091 -36.48188 -34.62426 -33.46501 -31.25371 -29.71404 -28.92630 -27.70432 -25.63404 -25.00076 -23.26009 -21.35329 -21.04612 -19.72327 -18.73014 -18.46700 -18.14799 -17.31965 -16.85701 -16.79290 -16.19778 -15.91945 -15.39261 -15.11559 -14.92652 -14.81268 -14.62898 -14.41624 -14.14420 -14.07092 -13.80624 -13.45237 -13.14044 -12.99923 -12.58088 -12.33398 -12.25484 -12.03419 -11.82048 -11.69407 -11.61458 -11.54055 -11.23657 -10.84519 -10.66375 -10.56255 -10.35311 -8.91277 -8.19008 -6.36050 -0.53284 0.05590 1.30029 1.36808 1.37062 1.45051 1.80366 2.35228 2.39642 2.63729 2.90738 3.09597 3.20949 3.56886 3.74472 3.85111 3.96397 4.10096 4.27582 4.51627 4.63282 4.72247 4.76251 4.81145 4.86183 4.93676 4.98473 5.04506 5.18660 5.23182 5.30462 5.32663 5.42075 5.45690 5.54900 5.62295 5.71159 5.89277 6.04893 6.13618 6.43141 6.73535 6.98776 7.33783 8.84786 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.010577 B = 0.008394 C = 0.005704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2646.541953 B = 3334.863718 C = 4907.724289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.428 5.428 2 C 0.277 3.723 3 C -0.004 4.004 4 C -0.121 4.121 5 C 0.128 3.872 6 N -0.488 5.488 7 C 0.316 3.684 8 N -0.480 5.480 9 C 0.194 3.806 10 C -0.547 4.547 11 H 0.059 0.941 12 C 0.019 3.981 13 N -0.921 5.921 14 Si 0.950 3.050 15 H -0.265 1.265 16 H -0.285 1.285 17 H -0.272 1.272 18 C 0.105 3.895 19 C -0.115 4.115 20 C -0.114 4.114 21 C -0.116 4.116 22 C -0.092 4.092 23 C 0.042 3.958 24 F -0.135 7.135 25 H 0.193 0.807 26 H 0.218 0.782 27 H 0.023 0.977 28 H 0.030 0.970 29 H 0.265 0.735 30 H 0.048 0.952 31 H 0.052 0.948 32 H 0.045 0.955 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.085 0.915 36 H 0.060 0.940 37 H 0.077 0.923 38 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.925 3.714 -14.555 16.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.104 5.104 2 C -0.039 4.039 3 C -0.016 4.016 4 C -0.144 4.144 5 C -0.030 4.030 6 N -0.202 5.202 7 C 0.082 3.918 8 N -0.196 5.196 9 C 0.070 3.930 10 C -0.586 4.586 11 H 0.077 0.923 12 C -0.181 4.181 13 N -0.560 5.560 14 Si 0.775 3.225 15 H -0.190 1.190 16 H -0.210 1.210 17 H -0.197 1.197 18 C -0.001 4.001 19 C -0.153 4.153 20 C -0.152 4.152 21 C -0.154 4.154 22 C -0.130 4.130 23 C 0.015 3.985 24 F -0.114 7.114 25 H 0.211 0.789 26 H 0.235 0.765 27 H 0.041 0.959 28 H 0.048 0.952 29 H 0.074 0.926 30 H 0.066 0.934 31 H 0.071 0.929 32 H 0.064 0.936 33 H 0.092 0.908 34 H 0.093 0.907 35 H 0.103 0.897 36 H 0.078 0.922 37 H 0.095 0.905 38 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 4.937 4.238 -14.176 15.597 hybrid contribution -0.781 -1.525 1.150 2.063 sum 4.156 2.713 -13.026 13.939 Atomic orbital electron populations 1.81207 1.12349 1.08794 1.08051 1.25265 0.92189 0.93257 0.93158 1.16289 0.84732 1.04392 0.96234 1.22373 0.95177 0.99387 0.97498 1.23421 0.91474 0.92594 0.95518 1.67800 1.40389 1.10490 1.01532 1.19833 0.87905 0.91114 0.92939 1.59729 1.07491 1.50287 1.02088 1.19794 0.96622 0.91516 0.85074 1.21766 1.42979 0.95421 0.98448 0.92284 1.25691 0.94833 1.02683 0.94936 1.70047 1.45210 1.37617 1.03137 0.85718 0.79260 0.80140 0.77346 1.19000 1.21007 1.19726 1.22065 0.83519 0.98871 0.95693 1.22363 0.96888 0.99329 0.96723 1.22439 0.96121 0.99009 0.97603 1.22346 0.98139 0.97660 0.97263 1.22011 0.98298 0.96301 0.96416 1.18421 0.90509 1.04152 0.85423 1.91439 1.81412 1.85130 1.53389 0.78947 0.76545 0.95921 0.95193 0.92612 0.93405 0.92906 0.93562 0.90760 0.90685 0.89676 0.92161 0.90454 0.93030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -14.56 18.54 19.00 0.35 -14.21 16 2 C 0.28 8.65 15.10 88.33 1.33 9.98 16 3 C 0.00 -0.13 5.76 -21.17 -0.12 -0.25 16 4 C -0.12 -2.39 9.85 22.64 0.22 -2.17 16 5 C 0.13 2.62 11.16 84.55 0.94 3.56 16 6 N -0.49 -14.97 7.59 -193.25 -1.47 -16.44 16 7 C 0.32 11.95 4.87 133.10 0.65 12.60 16 8 N -0.48 -20.14 4.48 -678.00 -3.04 -23.18 16 9 C 0.19 9.83 4.42 85.56 0.38 10.21 16 10 C -0.55 -28.99 7.83 25.60 0.20 -28.79 16 11 H 0.06 3.09 6.51 -2.91 -0.02 3.07 16 12 C 0.02 1.03 5.46 84.65 0.46 1.49 16 13 N -0.92 -53.64 13.29 21.45 0.28 -53.35 16 14 Si 0.95 42.92 29.54 68.60 2.03 44.95 16 15 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 16 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 17 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 18 C 0.11 3.88 1.72 45.64 0.08 3.96 16 19 C -0.11 -4.14 5.16 31.67 0.16 -3.97 16 20 C -0.11 -2.98 6.91 31.88 0.22 -2.76 16 21 C -0.12 -2.79 6.83 31.67 0.22 -2.58 16 22 C -0.09 -2.64 5.16 31.32 0.16 -2.48 16 23 C 0.04 1.61 6.96 22.91 0.16 1.77 16 24 F -0.14 -5.93 14.40 44.97 0.65 -5.29 16 25 H 0.19 2.01 8.06 -2.91 -0.02 1.99 16 26 H 0.22 2.19 8.06 -2.91 -0.02 2.17 16 27 H 0.02 1.27 5.57 -2.39 -0.01 1.26 16 28 H 0.03 1.64 6.48 -2.39 -0.02 1.63 16 29 H 0.26 14.70 8.31 -92.71 -0.77 13.93 16 30 H 0.05 1.96 6.47 -2.39 -0.02 1.94 16 31 H 0.05 2.06 7.18 -2.38 -0.02 2.04 16 32 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 33 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 34 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 35 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 36 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 37 H 0.08 2.00 8.14 -2.38 -0.02 1.98 16 38 H 0.05 1.57 7.39 -2.39 -0.02 1.55 16 Total: -1.00 -66.10 319.22 4.96 -61.14 By element: Atomic # 1 Polarization: 4.73 SS G_CDS: 1.09 Total: 5.82 kcal Atomic # 6 Polarization: -4.51 SS G_CDS: 5.07 Total: 0.55 kcal Atomic # 7 Polarization: -103.31 SS G_CDS: -3.87 Total: -107.18 kcal Atomic # 9 Polarization: -5.93 SS G_CDS: 0.65 Total: -5.29 kcal Atomic # 14 Polarization: 42.92 SS G_CDS: 2.03 Total: 44.95 kcal Total: -66.10 4.96 -61.14 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166535827.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.204 kcal (2) G-P(sol) polarization free energy of solvation -66.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.140 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds