Wall clock time and date at job start Tue Mar 31 2020 06:39:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46903 * 109.47213 * 2 1 4 4 C 1.46897 * 111.00015 * 199.52458 * 3 2 1 5 5 C 1.50699 * 109.46989 * 66.04767 * 4 3 2 6 6 H 1.08003 * 119.99960 * 359.97438 * 5 4 3 7 7 C 1.37875 * 120.00093 * 179.97438 * 5 4 3 8 8 N 1.31511 * 119.99887 * 359.97438 * 7 5 4 9 9 Si 1.86805 * 120.00074 * 180.02562 * 7 5 4 10 10 H 1.48494 * 109.47205 * 89.99745 * 9 7 5 11 11 H 1.48497 * 109.46773 * 209.99984 * 9 7 5 12 12 H 1.48500 * 109.46923 * 329.99520 * 9 7 5 13 13 C 1.37864 * 110.99792 * 75.57485 * 3 2 1 14 14 N 1.32666 * 120.90482 * 58.68622 * 13 3 2 15 15 C 1.32334 * 121.49679 * 179.71254 * 14 13 3 16 16 C 1.50700 * 118.51727 * 180.29993 * 15 14 13 17 17 N 1.31202 * 122.96212 * 0.58218 * 15 14 13 18 18 C 1.34138 * 120.45714 * 359.72028 * 17 15 14 19 19 C 1.40055 * 121.96234 * 179.97438 * 18 17 15 20 20 C 1.36564 * 119.57764 * 180.02562 * 19 18 17 21 21 F 1.35099 * 119.51998 * 179.97438 * 20 19 18 22 22 C 1.39469 * 120.96312 * 359.97438 * 20 19 18 23 23 C 1.36308 * 120.87439 * 0.03995 * 22 20 19 24 24 C 1.39971 * 119.53590 * 359.96206 * 23 22 20 25 25 H 1.09001 * 109.47567 * 184.87105 * 1 2 3 26 26 H 1.09009 * 109.46846 * 304.86458 * 1 2 3 27 27 H 1.08993 * 109.47406 * 64.86499 * 1 2 3 28 28 H 1.08996 * 109.47160 * 239.99979 * 2 1 3 29 29 H 1.09007 * 109.47228 * 120.00034 * 2 1 3 30 30 H 1.09000 * 109.46910 * 186.04643 * 4 3 2 31 31 H 1.08996 * 109.47396 * 306.04474 * 4 3 2 32 32 H 0.97006 * 120.00301 * 179.97438 * 8 7 5 33 33 H 1.08994 * 109.47196 * 270.27393 * 16 15 14 34 34 H 1.09002 * 109.47302 * 30.27685 * 16 15 14 35 35 H 1.09006 * 109.47095 * 150.27023 * 16 15 14 36 36 H 1.08000 * 120.21573 * 359.97438 * 19 18 17 37 37 H 1.08007 * 119.56386 * 180.02562 * 22 20 19 38 38 H 1.07999 * 120.23684 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4138 1.4505 -0.4583 5 6 3.4855 1.0449 -1.9079 6 1 2.5855 0.7659 -2.4358 7 6 4.7000 1.0299 -2.5603 8 7 5.7959 1.3700 -1.9177 9 14 4.7888 0.5278 -4.3574 10 1 4.6236 1.7283 -5.2156 11 1 6.1068 -0.0992 -4.6316 12 1 3.7067 -0.4451 -4.6536 13 6 1.8820 1.9576 1.2465 14 7 2.4681 1.4236 2.3102 15 6 2.3485 1.9666 3.5110 16 6 3.0484 1.3076 4.6716 17 7 1.6436 3.0497 3.7377 18 6 1.0046 3.6677 2.7332 19 6 0.2432 4.8250 2.9395 20 6 -0.3876 5.4144 1.8814 21 9 -1.1222 6.5304 2.0818 22 6 -0.2848 4.8810 0.5969 23 6 0.4482 3.7557 0.3634 24 6 1.1068 3.1282 1.4272 25 1 -0.3634 -1.0239 0.0873 26 1 -0.3633 0.5875 0.8433 27 1 -0.3634 0.4365 -0.9303 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5139 0.8900 30 1 3.7852 2.4692 -0.3473 31 1 4.0248 0.7738 0.1390 32 1 6.6505 1.3591 -2.3765 33 1 2.3853 0.5709 5.1250 34 1 3.9528 0.8130 4.3171 35 1 3.3136 2.0623 5.4120 36 1 0.1549 5.2483 3.9292 37 1 -0.7928 5.3658 -0.2237 38 1 0.5206 3.3513 -0.6354 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166591501.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:39:52 Heat of formation + Delta-G solvation = 27.253130 kcal Electronic energy + Delta-G solvation = -22804.915385 eV Core-core repulsion = 19369.085133 eV Total energy + Delta-G solvation = -3435.830252 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.129 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -49.04565 -41.25097 -37.79781 -37.19395 -33.28879 -32.58766 -31.76664 -30.59915 -30.05873 -28.15259 -26.83686 -24.10158 -22.97858 -22.65155 -22.36756 -20.41527 -18.73257 -17.79895 -16.84717 -16.45916 -16.00421 -15.83371 -15.50335 -15.19790 -14.65844 -14.14429 -14.00209 -13.82941 -13.33781 -13.25142 -12.88514 -12.81756 -12.57188 -12.32439 -12.26201 -11.81868 -11.58633 -11.38458 -11.16483 -10.98580 -10.77291 -10.64870 -10.55537 -10.42112 -10.03876 -9.49808 -9.00017 -8.88789 -8.60814 -8.24378 -7.89452 -6.16017 -4.19808 0.30884 0.76091 1.94254 2.91259 3.24995 3.31593 3.33907 3.86763 3.95907 4.11943 4.26925 4.36336 4.51278 4.73163 4.91447 5.04059 5.20305 5.28477 5.35981 5.56804 5.61996 5.66002 5.75878 5.77889 5.88154 5.94278 6.01576 6.13106 6.18665 6.23944 6.43909 6.53779 6.61409 6.74442 7.02297 7.15363 7.27704 7.59893 7.70992 7.93022 8.27526 8.37817 8.85798 9.44724 10.94627 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.015418 B = 0.005163 C = 0.004520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1815.657659 B = 5422.031072 C = 6193.607335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.058 3.942 3 N -0.496 5.496 4 C 0.204 3.796 5 C -0.516 4.516 6 H 0.068 0.932 7 C 0.060 3.940 8 N -0.893 5.893 9 Si 0.902 3.098 10 H -0.279 1.279 11 H -0.286 1.286 12 H -0.272 1.272 13 C 0.436 3.564 14 N -0.562 5.562 15 C 0.347 3.653 16 C -0.085 4.085 17 N -0.534 5.534 18 C 0.194 3.806 19 C -0.161 4.161 20 C 0.146 3.854 21 F -0.136 7.136 22 C -0.183 4.183 23 C 0.000 4.000 24 C -0.170 4.170 25 H 0.055 0.945 26 H 0.039 0.961 27 H 0.062 0.938 28 H 0.100 0.900 29 H 0.044 0.956 30 H 0.029 0.971 31 H 0.014 0.986 32 H 0.264 0.736 33 H 0.083 0.917 34 H 0.086 0.914 35 H 0.083 0.917 36 H 0.147 0.853 37 H 0.142 0.858 38 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.738 2.680 7.990 13.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.069 4.069 3 N -0.221 5.221 4 C 0.082 3.918 5 C -0.554 4.554 6 H 0.086 0.914 7 C -0.143 4.143 8 N -0.531 5.531 9 Si 0.729 3.271 10 H -0.205 1.205 11 H -0.212 1.212 12 H -0.197 1.197 13 C 0.187 3.813 14 N -0.281 5.281 15 C 0.078 3.922 16 C -0.144 4.144 17 N -0.251 5.251 18 C 0.066 3.934 19 C -0.181 4.181 20 C 0.123 3.877 21 F -0.115 7.115 22 C -0.202 4.202 23 C -0.020 4.020 24 C -0.176 4.176 25 H 0.074 0.926 26 H 0.058 0.942 27 H 0.081 0.919 28 H 0.118 0.882 29 H 0.063 0.937 30 H 0.047 0.953 31 H 0.032 0.968 32 H 0.074 0.926 33 H 0.102 0.898 34 H 0.105 0.895 35 H 0.102 0.898 36 H 0.164 0.836 37 H 0.159 0.841 38 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -10.400 2.630 8.515 13.696 hybrid contribution 0.175 0.061 -1.095 1.111 sum -10.225 2.691 7.420 12.917 Atomic orbital electron populations 1.21817 0.96197 1.00737 1.01628 1.22127 0.94217 0.87468 1.03068 1.60244 1.27224 1.19567 1.15021 1.19843 0.78249 0.97698 0.96052 1.21044 0.93697 1.45989 0.94697 0.91355 1.24979 0.95451 0.95224 0.98627 1.69964 0.98619 1.47733 1.36827 0.86435 0.77446 0.78768 0.84408 1.20534 1.21221 1.19683 1.20798 0.83373 0.87590 0.89561 1.68551 1.23858 1.35678 0.99985 1.23059 0.89628 0.87574 0.91989 1.20590 1.00211 1.00326 0.93228 1.68598 1.12041 1.10762 1.33681 1.18453 0.93276 0.93422 0.88237 1.20391 1.01242 0.96860 0.99618 1.17436 0.92261 0.83820 0.94152 1.91512 1.74603 1.49492 1.95855 1.20946 1.04499 0.99120 0.95650 1.21023 0.89754 0.91547 0.99680 1.19371 1.03599 0.99255 0.95386 0.92644 0.94222 0.91889 0.88199 0.93744 0.95285 0.96838 0.92643 0.89820 0.89491 0.89835 0.83568 0.84053 0.82371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.19 10.07 37.16 0.37 -1.81 16 2 C 0.06 1.07 5.49 -3.82 -0.02 1.04 16 3 N -0.50 -10.16 3.69 -174.05 -0.64 -10.80 16 4 C 0.20 5.10 4.55 -4.98 -0.02 5.07 16 5 C -0.52 -13.48 8.24 -34.44 -0.28 -13.77 16 6 H 0.07 1.72 7.31 -52.48 -0.38 1.34 16 7 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 8 N -0.89 -25.61 13.29 55.43 0.74 -24.88 16 9 Si 0.90 20.56 29.54 -169.99 -5.02 15.54 16 10 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 11 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 12 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 13 C 0.44 8.54 4.58 -154.96 -0.71 7.83 16 14 N -0.56 -10.96 9.45 -9.71 -0.09 -11.05 16 15 C 0.35 5.99 7.62 -157.23 -1.20 4.79 16 16 C -0.08 -1.09 10.28 36.01 0.37 -0.72 16 17 N -0.53 -9.24 10.32 -8.82 -0.09 -9.34 16 18 C 0.19 3.30 6.61 -84.86 -0.56 2.74 16 19 C -0.16 -2.32 9.97 -39.50 -0.39 -2.71 16 20 C 0.15 1.95 7.24 -39.73 -0.29 1.67 16 21 F -0.14 -1.74 17.24 2.25 0.04 -1.70 16 22 C -0.18 -2.38 9.93 -39.82 -0.40 -2.78 16 23 C 0.00 0.00 9.58 -39.63 -0.38 -0.38 16 24 C -0.17 -3.00 5.76 -106.67 -0.61 -3.61 16 25 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 26 H 0.04 0.60 7.60 -51.92 -0.39 0.21 16 27 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 28 H 0.10 1.95 6.58 -51.93 -0.34 1.61 16 29 H 0.04 0.84 7.43 -51.93 -0.39 0.45 16 30 H 0.03 0.80 8.05 -51.93 -0.42 0.38 16 31 H 0.01 0.37 8.12 -51.93 -0.42 -0.05 16 32 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 33 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 35 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.15 1.86 8.06 -52.49 -0.42 1.43 16 37 H 0.14 1.46 8.06 -52.48 -0.42 1.03 16 38 H 0.16 2.38 7.65 -52.49 -0.40 1.98 16 LS Contribution 328.09 15.07 4.94 4.94 Total: -1.00 -29.21 328.09 -9.19 -38.40 By element: Atomic # 1 Polarization: 4.84 SS G_CDS: -4.84 Total: 0.00 kcal Atomic # 6 Polarization: 3.10 SS G_CDS: -4.22 Total: -1.12 kcal Atomic # 7 Polarization: -55.97 SS G_CDS: -0.09 Total: -56.06 kcal Atomic # 9 Polarization: -1.74 SS G_CDS: 0.04 Total: -1.70 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -29.21 -9.19 -38.40 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166591501.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.649 kcal (2) G-P(sol) polarization free energy of solvation -29.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.396 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds