Wall clock time and date at job start Tue Mar 31 2020 06:39:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46903 * 109.47213 * 2 1 4 4 C 1.46897 * 111.00015 * 199.52458 * 3 2 1 5 5 C 1.50699 * 109.46989 * 66.04767 * 4 3 2 6 6 H 1.08003 * 119.99960 * 359.97438 * 5 4 3 7 7 C 1.37875 * 120.00093 * 179.97438 * 5 4 3 8 8 N 1.31511 * 119.99887 * 359.97438 * 7 5 4 9 9 Si 1.86805 * 120.00074 * 180.02562 * 7 5 4 10 10 H 1.48494 * 109.47205 * 89.99745 * 9 7 5 11 11 H 1.48497 * 109.46773 * 209.99984 * 9 7 5 12 12 H 1.48500 * 109.46923 * 329.99520 * 9 7 5 13 13 C 1.37864 * 110.99792 * 75.57485 * 3 2 1 14 14 N 1.32666 * 120.90482 * 58.68622 * 13 3 2 15 15 C 1.32334 * 121.49679 * 179.71254 * 14 13 3 16 16 C 1.50700 * 118.51727 * 180.29993 * 15 14 13 17 17 N 1.31202 * 122.96212 * 0.58218 * 15 14 13 18 18 C 1.34138 * 120.45714 * 359.72028 * 17 15 14 19 19 C 1.40055 * 121.96234 * 179.97438 * 18 17 15 20 20 C 1.36564 * 119.57764 * 180.02562 * 19 18 17 21 21 F 1.35099 * 119.51998 * 179.97438 * 20 19 18 22 22 C 1.39469 * 120.96312 * 359.97438 * 20 19 18 23 23 C 1.36308 * 120.87439 * 0.03995 * 22 20 19 24 24 C 1.39971 * 119.53590 * 359.96206 * 23 22 20 25 25 H 1.09001 * 109.47567 * 184.87105 * 1 2 3 26 26 H 1.09009 * 109.46846 * 304.86458 * 1 2 3 27 27 H 1.08993 * 109.47406 * 64.86499 * 1 2 3 28 28 H 1.08996 * 109.47160 * 239.99979 * 2 1 3 29 29 H 1.09007 * 109.47228 * 120.00034 * 2 1 3 30 30 H 1.09000 * 109.46910 * 186.04643 * 4 3 2 31 31 H 1.08996 * 109.47396 * 306.04474 * 4 3 2 32 32 H 0.97006 * 120.00301 * 179.97438 * 8 7 5 33 33 H 1.08994 * 109.47196 * 270.27393 * 16 15 14 34 34 H 1.09002 * 109.47302 * 30.27685 * 16 15 14 35 35 H 1.09006 * 109.47095 * 150.27023 * 16 15 14 36 36 H 1.08000 * 120.21573 * 359.97438 * 19 18 17 37 37 H 1.08007 * 119.56386 * 180.02562 * 22 20 19 38 38 H 1.07999 * 120.23684 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4138 1.4505 -0.4583 5 6 3.4855 1.0449 -1.9079 6 1 2.5855 0.7659 -2.4358 7 6 4.7000 1.0299 -2.5603 8 7 5.7959 1.3700 -1.9177 9 14 4.7888 0.5278 -4.3574 10 1 4.6236 1.7283 -5.2156 11 1 6.1068 -0.0992 -4.6316 12 1 3.7067 -0.4451 -4.6536 13 6 1.8820 1.9576 1.2465 14 7 2.4681 1.4236 2.3102 15 6 2.3485 1.9666 3.5110 16 6 3.0484 1.3076 4.6716 17 7 1.6436 3.0497 3.7377 18 6 1.0046 3.6677 2.7332 19 6 0.2432 4.8250 2.9395 20 6 -0.3876 5.4144 1.8814 21 9 -1.1222 6.5304 2.0818 22 6 -0.2848 4.8810 0.5969 23 6 0.4482 3.7557 0.3634 24 6 1.1068 3.1282 1.4272 25 1 -0.3634 -1.0239 0.0873 26 1 -0.3633 0.5875 0.8433 27 1 -0.3634 0.4365 -0.9303 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5139 0.8900 30 1 3.7852 2.4692 -0.3473 31 1 4.0248 0.7738 0.1390 32 1 6.6505 1.3591 -2.3765 33 1 2.3853 0.5709 5.1250 34 1 3.9528 0.8130 4.3171 35 1 3.3136 2.0623 5.4120 36 1 0.1549 5.2483 3.9292 37 1 -0.7928 5.3658 -0.2237 38 1 0.5206 3.3513 -0.6354 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166591501.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:39:51 Heat of formation + Delta-G solvation = 11.281232 kcal Electronic energy + Delta-G solvation = -22805.607978 eV Core-core repulsion = 19369.085133 eV Total energy + Delta-G solvation = -3436.522845 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.129 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -50.11825 -42.58249 -39.23885 -38.51971 -35.07503 -34.17322 -32.98629 -31.83585 -31.61423 -29.33099 -28.66614 -25.50321 -24.46073 -24.14853 -23.73436 -21.89215 -19.94952 -19.10835 -18.61600 -17.91923 -17.22211 -17.16185 -16.83915 -16.70007 -16.24518 -15.58136 -15.34580 -15.08952 -14.80153 -14.42502 -14.30940 -14.09282 -14.06432 -13.91382 -13.31241 -13.04082 -12.95393 -12.87309 -12.79870 -12.57380 -12.40789 -12.16302 -11.98116 -11.89050 -11.73118 -11.42653 -10.66069 -10.42733 -10.10283 -9.63115 -9.44837 -8.23321 -6.34996 -0.98394 -0.48468 0.64433 1.45247 1.46174 1.57421 1.70308 2.35729 2.57882 2.68838 2.82303 3.03125 3.11385 3.27769 3.52265 3.66585 3.85742 4.06150 4.13424 4.24517 4.41031 4.45542 4.62298 4.66203 4.71302 4.79038 4.86595 4.89450 4.95239 5.00296 5.05878 5.07954 5.15275 5.30642 5.33021 5.58846 5.62120 5.86440 5.94926 5.97991 6.43982 6.78586 7.02384 7.34971 8.88554 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.015418 B = 0.005163 C = 0.004520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1815.657659 B = 5422.031072 C = 6193.607335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.058 3.942 3 N -0.488 5.488 4 C 0.227 3.773 5 C -0.522 4.522 6 H 0.078 0.922 7 C 0.005 3.995 8 N -0.935 5.935 9 Si 0.974 3.026 10 H -0.273 1.273 11 H -0.287 1.287 12 H -0.257 1.257 13 C 0.410 3.590 14 N -0.586 5.586 15 C 0.328 3.672 16 C -0.080 4.080 17 N -0.534 5.534 18 C 0.176 3.824 19 C -0.160 4.160 20 C 0.157 3.843 21 F -0.126 7.126 22 C -0.159 4.159 23 C -0.014 4.014 24 C -0.181 4.181 25 H 0.079 0.921 26 H 0.035 0.965 27 H 0.071 0.929 28 H 0.086 0.914 29 H 0.032 0.968 30 H -0.007 1.007 31 H -0.024 1.024 32 H 0.265 0.735 33 H 0.104 0.896 34 H 0.083 0.917 35 H 0.100 0.900 36 H 0.164 0.836 37 H 0.176 0.824 38 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.870 3.356 7.439 15.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.069 4.069 3 N -0.212 5.212 4 C 0.103 3.897 5 C -0.560 4.560 6 H 0.096 0.904 7 C -0.194 4.194 8 N -0.575 5.575 9 Si 0.799 3.201 10 H -0.198 1.198 11 H -0.213 1.213 12 H -0.181 1.181 13 C 0.161 3.839 14 N -0.305 5.305 15 C 0.059 3.941 16 C -0.138 4.138 17 N -0.250 5.250 18 C 0.048 3.952 19 C -0.180 4.180 20 C 0.134 3.866 21 F -0.105 7.105 22 C -0.178 4.178 23 C -0.035 4.035 24 C -0.187 4.187 25 H 0.098 0.902 26 H 0.054 0.946 27 H 0.090 0.910 28 H 0.104 0.896 29 H 0.050 0.950 30 H 0.012 0.988 31 H -0.006 1.006 32 H 0.074 0.926 33 H 0.123 0.877 34 H 0.101 0.899 35 H 0.119 0.881 36 H 0.182 0.818 37 H 0.194 0.806 38 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -12.569 3.308 7.985 15.254 hybrid contribution 0.765 -0.043 -0.822 1.124 sum -11.804 3.265 7.163 14.188 Atomic orbital electron populations 1.21696 0.92979 1.02330 1.01863 1.22164 0.96750 0.86241 1.01725 1.60142 1.24107 1.20663 1.16298 1.19319 0.80491 0.94389 0.95522 1.21359 0.94122 1.45390 0.95128 0.90380 1.25942 0.94975 0.95054 1.03415 1.70114 0.99300 1.49176 1.38918 0.85300 0.77626 0.78723 0.78491 1.19823 1.21280 1.18119 1.20888 0.85009 0.88804 0.89204 1.68502 1.24521 1.36588 1.00903 1.23778 0.90105 0.87940 0.92275 1.20697 1.00028 1.00987 0.92078 1.68652 1.11935 1.10641 1.33803 1.18787 0.94062 0.94398 0.87997 1.20551 1.00608 0.95929 1.00923 1.17417 0.91507 0.83642 0.93986 1.91547 1.74193 1.48911 1.95806 1.21242 1.02506 0.97553 0.96460 1.21034 0.90773 0.92655 0.99024 1.19502 1.03870 0.98716 0.96593 0.90199 0.94615 0.91019 0.89592 0.94957 0.98849 1.00613 0.92616 0.87737 0.89862 0.88120 0.81838 0.80641 0.82500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.79 10.07 71.98 0.72 -3.07 16 2 C 0.06 2.17 5.49 86.30 0.47 2.65 16 3 N -0.49 -20.72 3.69 -704.58 -2.60 -23.32 16 4 C 0.23 11.97 4.55 85.56 0.39 12.36 16 5 C -0.52 -27.92 8.24 25.60 0.21 -27.70 16 6 H 0.08 3.94 7.31 -2.91 -0.02 3.92 16 7 C 0.00 0.26 5.46 84.65 0.46 0.72 16 8 N -0.94 -55.39 13.29 21.45 0.28 -55.10 16 9 Si 0.97 42.25 29.54 68.60 2.03 44.27 16 10 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 11 H -0.29 -12.39 7.11 99.48 0.71 -11.68 16 12 H -0.26 -10.46 7.11 99.48 0.71 -9.75 16 13 C 0.41 16.61 4.58 133.97 0.61 17.23 16 14 N -0.59 -23.82 9.45 -184.64 -1.74 -25.56 16 15 C 0.33 11.51 7.62 138.76 1.06 12.57 16 16 C -0.08 -2.02 10.28 71.24 0.73 -1.28 16 17 N -0.53 -18.36 10.32 -181.81 -1.88 -20.24 16 18 C 0.18 5.86 6.61 40.08 0.27 6.13 16 19 C -0.16 -4.30 9.97 22.32 0.22 -4.08 16 20 C 0.16 3.76 7.24 22.18 0.16 3.92 16 21 F -0.13 -2.77 17.24 44.97 0.78 -2.00 16 22 C -0.16 -3.68 9.93 22.12 0.22 -3.46 16 23 C -0.01 -0.43 9.58 22.24 0.21 -0.21 16 24 C -0.18 -6.40 5.76 -21.19 -0.12 -6.53 16 25 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 26 H 0.03 1.06 7.60 -2.38 -0.02 1.04 16 27 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 28 H 0.09 3.44 6.58 -2.39 -0.02 3.42 16 29 H 0.03 1.27 7.43 -2.38 -0.02 1.26 16 30 H -0.01 -0.39 8.05 -2.39 -0.02 -0.41 16 31 H -0.02 -1.42 8.12 -2.39 -0.02 -1.44 16 32 H 0.27 14.79 8.31 -92.70 -0.77 14.02 16 33 H 0.10 2.18 8.14 -2.39 -0.02 2.16 16 34 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 35 H 0.10 2.17 8.14 -2.38 -0.02 2.15 16 36 H 0.16 3.75 8.06 -2.91 -0.02 3.73 16 37 H 0.18 2.86 8.06 -2.91 -0.02 2.84 16 38 H 0.16 4.63 7.65 -2.91 -0.02 4.60 16 Total: -1.00 -65.24 328.09 3.56 -61.68 By element: Atomic # 1 Polarization: 9.97 SS G_CDS: 1.07 Total: 11.04 kcal Atomic # 6 Polarization: 3.60 SS G_CDS: 5.62 Total: 9.23 kcal Atomic # 7 Polarization: -118.29 SS G_CDS: -5.93 Total: -124.22 kcal Atomic # 9 Polarization: -2.77 SS G_CDS: 0.78 Total: -2.00 kcal Atomic # 14 Polarization: 42.25 SS G_CDS: 2.03 Total: 44.27 kcal Total: -65.24 3.56 -61.68 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166591501.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.961 kcal (2) G-P(sol) polarization free energy of solvation -65.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.680 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds