Wall clock time and date at job start Tue Mar 31 2020 06:28:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86793 * 120.00072 * 2 1 4 4 H 1.48491 * 109.47437 * 240.00069 * 3 2 1 5 5 H 1.48504 * 109.47285 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47145 * 119.99896 * 3 2 1 7 7 C 1.37881 * 119.99925 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99708 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99932 * 359.97438 * 7 2 1 10 10 H 1.09005 * 109.53307 * 59.90361 * 9 7 2 11 11 C 1.53116 * 109.50739 * 299.80568 * 9 7 2 12 12 C 1.53119 * 109.15997 * 182.40313 * 11 9 7 13 13 C 1.53034 * 109.27884 * 57.65653 * 12 11 9 14 14 N 1.46848 * 109.52121 * 300.81830 * 13 12 11 15 15 C 1.39211 * 110.99738 * 185.83616 * 14 13 12 16 16 N 1.32214 * 119.91503 * 235.80964 * 15 14 13 17 17 C 1.32497 * 122.45983 * 180.02562 * 16 15 14 18 18 C 1.36635 * 121.37025 * 359.55318 * 17 16 15 19 19 F 1.35101 * 120.58999 * 179.90806 * 18 17 16 20 20 C 1.40244 * 118.81446 * 0.67459 * 18 17 16 21 21 C 1.46000 * 135.14844 * 179.23026 * 20 18 17 22 22 C 1.34468 * 106.97293 * 180.02562 * 21 20 18 23 23 N 1.36643 * 109.89827 * 359.97438 * 22 21 20 24 24 H 0.97001 * 125.06414 * 179.97438 * 23 22 21 25 25 C 1.37620 * 109.86508 * 0.26847 * 23 22 21 26 26 C 1.46849 * 111.19793 * 61.74186 * 14 13 12 27 27 H 0.96993 * 120.00266 * 359.97438 * 1 2 3 28 28 H 1.08997 * 109.52195 * 302.30938 * 11 9 7 29 29 H 1.09005 * 109.52009 * 62.49954 * 11 9 7 30 30 H 1.09006 * 109.50063 * 177.59442 * 12 11 9 31 31 H 1.09002 * 109.50134 * 297.71081 * 12 11 9 32 32 H 1.09000 * 109.46327 * 180.80018 * 13 12 11 33 33 H 1.09002 * 109.46318 * 60.83393 * 13 12 11 34 34 H 1.08001 * 119.31254 * 180.02562 * 17 16 15 35 35 H 1.08006 * 126.51531 * 359.97438 * 21 20 18 36 36 H 1.07996 * 125.05549 * 179.97438 * 22 21 20 37 37 H 1.09008 * 109.46283 * 58.27413 * 26 14 13 38 38 H 1.08997 * 109.46076 * 178.24664 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 1 0.6223 -2.5570 -0.8891 11 6 0.3746 -2.5836 1.2521 12 6 -0.3411 -3.9370 1.2746 13 6 0.6989 -5.0591 1.2370 14 7 1.5111 -4.9348 0.0200 15 6 2.3802 -6.0143 -0.1121 16 7 3.6798 -5.8035 -0.2338 17 6 4.5516 -6.7928 -0.3630 18 6 4.1499 -8.0987 -0.3683 19 9 5.0523 -9.0951 -0.5028 20 6 2.7824 -8.3858 -0.2480 21 6 1.9787 -9.6044 -0.2262 22 6 0.6961 -9.2262 -0.0839 23 7 0.6182 -7.8639 -0.0126 24 1 -0.2026 -7.3573 0.0905 25 6 1.8770 -7.3174 -0.1155 26 6 2.2448 -3.6629 -0.0012 27 1 -0.4850 0.8400 0.0004 28 1 0.9986 -2.4867 2.1405 29 1 -0.3635 -1.7815 1.2350 30 1 -0.9335 -4.0203 2.1857 31 1 -0.9948 -4.0174 0.4061 32 1 0.1921 -6.0242 1.2385 33 1 1.3436 -4.9863 2.1129 34 1 5.6025 -6.5624 -0.4584 35 1 2.3445 -10.6172 -0.3095 36 1 -0.1470 -9.8991 -0.0333 37 1 2.8823 -3.5966 0.8805 38 1 2.8608 -3.6139 -0.8991 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166742025.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:53 Heat of formation + Delta-G solvation = 32.688163 kcal Electronic energy + Delta-G solvation = -22915.476678 eV Core-core repulsion = 19479.882107 eV Total energy + Delta-G solvation = -3435.594571 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.129 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -48.67334 -41.67712 -38.93933 -37.40931 -34.00644 -32.14847 -31.09008 -30.42124 -29.41978 -28.57601 -25.08853 -24.16611 -23.08696 -21.92483 -21.53009 -20.64903 -18.90974 -18.54666 -17.35418 -16.95944 -15.99518 -15.75876 -15.56992 -15.14218 -14.56219 -14.49703 -14.32913 -13.90788 -13.71467 -13.38941 -13.16661 -12.74124 -12.41496 -12.33538 -12.22825 -12.12230 -11.79386 -10.95393 -10.85313 -10.73592 -10.29261 -10.05498 -9.93732 -9.63218 -9.52501 -9.22671 -9.03666 -8.76171 -8.52394 -8.31135 -7.33848 -6.00871 -4.06269 0.91148 1.42715 2.52500 2.92454 3.32912 3.37002 3.40367 3.66729 3.98344 4.29572 4.43980 4.50888 4.67209 4.88507 5.01217 5.20163 5.30443 5.38436 5.42246 5.49229 5.62291 5.73475 5.93611 6.03273 6.31321 6.33726 6.41724 6.46343 6.48290 6.60178 6.80612 6.89438 6.97888 7.18818 7.28578 7.33797 7.61650 7.71907 7.98761 8.06793 8.20028 8.43213 8.97066 9.58319 11.05645 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.025831 B = 0.004306 C = 0.003774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1083.722772 B = 6500.498898 C = 7417.701324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.064 3.936 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.512 4.512 8 H 0.056 0.944 9 C 0.051 3.949 10 H 0.034 0.966 11 C -0.114 4.114 12 C -0.119 4.119 13 C 0.066 3.934 14 N -0.475 5.475 15 C 0.338 3.662 16 N -0.484 5.484 17 C 0.063 3.937 18 C 0.047 3.953 19 F -0.138 7.138 20 C -0.096 4.096 21 C -0.204 4.204 22 C 0.065 3.935 23 N -0.570 5.570 24 H 0.423 0.577 25 C 0.052 3.948 26 C 0.079 3.921 27 H 0.260 0.740 28 H 0.034 0.966 29 H 0.095 0.905 30 H 0.055 0.945 31 H 0.064 0.936 32 H 0.055 0.945 33 H 0.043 0.957 34 H 0.163 0.837 35 H 0.151 0.849 36 H 0.177 0.823 37 H 0.040 0.960 38 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.134 -17.540 1.774 17.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.138 4.138 3 Si 0.720 3.280 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.203 1.203 7 C -0.551 4.551 8 H 0.075 0.925 9 C 0.032 3.968 10 H 0.052 0.948 11 C -0.152 4.152 12 C -0.157 4.157 13 C -0.060 4.060 14 N -0.192 5.192 15 C 0.095 3.905 16 N -0.199 5.199 17 C -0.088 4.088 18 C 0.023 3.977 19 F -0.117 7.117 20 C -0.108 4.108 21 C -0.229 4.229 22 C -0.065 4.065 23 N -0.173 5.173 24 H 0.263 0.737 25 C -0.061 4.061 26 C -0.046 4.046 27 H 0.070 0.930 28 H 0.053 0.947 29 H 0.113 0.887 30 H 0.074 0.926 31 H 0.083 0.917 32 H 0.073 0.927 33 H 0.062 0.938 34 H 0.180 0.820 35 H 0.169 0.831 36 H 0.194 0.806 37 H 0.058 0.942 38 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -0.371 -16.484 1.402 16.548 hybrid contribution 0.443 0.012 0.492 0.662 sum 0.072 -16.472 1.894 16.581 Atomic orbital electron populations 1.69864 1.05869 1.26525 1.50696 1.24919 0.94838 0.99000 0.95008 0.86652 0.79591 0.83053 0.78680 1.20224 1.21361 1.20308 1.21064 0.92998 0.90302 1.50751 0.92549 1.18762 0.92642 0.90652 0.94721 0.94789 1.21717 1.00244 0.94338 0.98881 1.21748 0.96785 0.96292 1.00847 1.22228 0.95706 0.99103 0.88993 1.59327 1.21618 1.02880 1.35358 1.19419 0.88212 0.87465 0.95396 1.67804 1.00383 1.33996 1.17678 1.21989 0.99993 0.86159 1.00624 1.17636 0.84805 0.85926 1.09317 1.91440 1.66184 1.60286 1.93747 1.19196 0.91595 0.94353 1.05651 1.21486 0.91336 0.96948 1.13126 1.21988 0.98825 0.83358 1.02368 1.41987 1.07252 1.06169 1.61909 0.73711 1.18527 0.85520 0.93010 1.09040 1.22324 0.95961 0.84957 1.01368 0.92985 0.94673 0.88652 0.92588 0.91742 0.92668 0.93846 0.82022 0.83145 0.80581 0.94165 0.90624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.79 11.36 55.43 0.63 -24.16 16 2 C 0.06 1.73 5.30 -17.82 -0.09 1.63 16 3 Si 0.89 21.09 29.54 -169.99 -5.02 16.07 16 4 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 5 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 7 C -0.51 -13.85 8.56 -34.44 -0.29 -14.14 16 8 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 9 C 0.05 1.25 2.26 -91.69 -0.21 1.04 16 10 H 0.03 0.91 8.14 -51.93 -0.42 0.49 16 11 C -0.11 -2.54 5.03 -26.61 -0.13 -2.68 16 12 C -0.12 -2.08 6.09 -26.65 -0.16 -2.24 16 13 C 0.07 1.07 5.25 -3.83 -0.02 1.05 16 14 N -0.47 -8.77 4.69 -173.04 -0.81 -9.58 16 15 C 0.34 5.94 6.44 -154.76 -1.00 4.94 16 16 N -0.48 -8.71 8.68 -12.51 -0.11 -8.82 16 17 C 0.06 0.97 11.09 -17.84 -0.20 0.78 16 18 C 0.05 0.70 7.34 -39.41 -0.29 0.42 16 19 F -0.14 -1.97 17.29 2.25 0.04 -1.93 16 20 C -0.10 -1.40 6.43 -105.12 -0.68 -2.08 16 21 C -0.20 -2.30 11.07 -37.81 -0.42 -2.72 16 22 C 0.06 0.59 11.82 -16.74 -0.20 0.39 16 23 N -0.57 -6.46 5.44 -10.52 -0.06 -6.51 16 24 H 0.42 4.06 7.35 -40.82 -0.30 3.76 16 25 C 0.05 0.78 6.55 -83.81 -0.55 0.23 16 26 C 0.08 1.71 3.88 -3.84 -0.01 1.69 16 27 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 28 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.10 2.39 6.17 -51.93 -0.32 2.07 16 30 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 32 H 0.06 0.72 5.17 -51.93 -0.27 0.46 16 33 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.16 2.06 8.06 -52.49 -0.42 1.64 16 35 H 0.15 1.38 8.06 -52.48 -0.42 0.95 16 36 H 0.18 0.84 8.06 -52.49 -0.42 0.42 16 37 H 0.04 0.90 8.12 -51.92 -0.42 0.47 16 38 H 0.08 1.71 7.72 -51.93 -0.40 1.31 16 LS Contribution 310.89 15.07 4.69 4.69 Total: -1.00 -29.85 310.89 -9.53 -39.38 By element: Atomic # 1 Polarization: 7.20 SS G_CDS: -4.63 Total: 2.57 kcal Atomic # 6 Polarization: -7.44 SS G_CDS: -4.25 Total: -11.69 kcal Atomic # 7 Polarization: -48.74 SS G_CDS: -0.35 Total: -49.08 kcal Atomic # 9 Polarization: -1.97 SS G_CDS: 0.04 Total: -1.93 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -29.85 -9.53 -39.38 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166742025.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.073 kcal (2) G-P(sol) polarization free energy of solvation -29.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.384 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds