Wall clock time and date at job start Tue Mar 31 2020 06:28:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86793 * 120.00072 * 2 1 4 4 H 1.48491 * 109.47437 * 240.00069 * 3 2 1 5 5 H 1.48504 * 109.47285 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47145 * 119.99896 * 3 2 1 7 7 C 1.37881 * 119.99925 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99708 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99932 * 359.97438 * 7 2 1 10 10 H 1.09005 * 109.53307 * 59.90361 * 9 7 2 11 11 C 1.53116 * 109.50739 * 299.80568 * 9 7 2 12 12 C 1.53119 * 109.15997 * 182.40313 * 11 9 7 13 13 C 1.53034 * 109.27884 * 57.65653 * 12 11 9 14 14 N 1.46848 * 109.52121 * 300.81830 * 13 12 11 15 15 C 1.39211 * 110.99738 * 185.83616 * 14 13 12 16 16 N 1.32214 * 119.91503 * 235.80964 * 15 14 13 17 17 C 1.32497 * 122.45983 * 180.02562 * 16 15 14 18 18 C 1.36635 * 121.37025 * 359.55318 * 17 16 15 19 19 F 1.35101 * 120.58999 * 179.90806 * 18 17 16 20 20 C 1.40244 * 118.81446 * 0.67459 * 18 17 16 21 21 C 1.46000 * 135.14844 * 179.23026 * 20 18 17 22 22 C 1.34468 * 106.97293 * 180.02562 * 21 20 18 23 23 N 1.36643 * 109.89827 * 359.97438 * 22 21 20 24 24 H 0.97001 * 125.06414 * 179.97438 * 23 22 21 25 25 C 1.37620 * 109.86508 * 0.26847 * 23 22 21 26 26 C 1.46849 * 111.19793 * 61.74186 * 14 13 12 27 27 H 0.96993 * 120.00266 * 359.97438 * 1 2 3 28 28 H 1.08997 * 109.52195 * 302.30938 * 11 9 7 29 29 H 1.09005 * 109.52009 * 62.49954 * 11 9 7 30 30 H 1.09006 * 109.50063 * 177.59442 * 12 11 9 31 31 H 1.09002 * 109.50134 * 297.71081 * 12 11 9 32 32 H 1.09000 * 109.46327 * 180.80018 * 13 12 11 33 33 H 1.09002 * 109.46318 * 60.83393 * 13 12 11 34 34 H 1.08001 * 119.31254 * 180.02562 * 17 16 15 35 35 H 1.08006 * 126.51531 * 359.97438 * 21 20 18 36 36 H 1.07996 * 125.05549 * 179.97438 * 22 21 20 37 37 H 1.09008 * 109.46283 * 58.27413 * 26 14 13 38 38 H 1.08997 * 109.46076 * 178.24664 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 1 0.6223 -2.5570 -0.8891 11 6 0.3746 -2.5836 1.2521 12 6 -0.3411 -3.9370 1.2746 13 6 0.6989 -5.0591 1.2370 14 7 1.5111 -4.9348 0.0200 15 6 2.3802 -6.0143 -0.1121 16 7 3.6798 -5.8035 -0.2338 17 6 4.5516 -6.7928 -0.3630 18 6 4.1499 -8.0987 -0.3683 19 9 5.0523 -9.0951 -0.5028 20 6 2.7824 -8.3858 -0.2480 21 6 1.9787 -9.6044 -0.2262 22 6 0.6961 -9.2262 -0.0839 23 7 0.6182 -7.8639 -0.0126 24 1 -0.2026 -7.3573 0.0905 25 6 1.8770 -7.3174 -0.1155 26 6 2.2448 -3.6629 -0.0012 27 1 -0.4850 0.8400 0.0004 28 1 0.9986 -2.4867 2.1405 29 1 -0.3635 -1.7815 1.2350 30 1 -0.9335 -4.0203 2.1857 31 1 -0.9948 -4.0174 0.4061 32 1 0.1921 -6.0242 1.2385 33 1 1.3436 -4.9863 2.1129 34 1 5.6025 -6.5624 -0.4584 35 1 2.3445 -10.6172 -0.3095 36 1 -0.1470 -9.8991 -0.0333 37 1 2.8823 -3.5966 0.8805 38 1 2.8608 -3.6139 -0.8991 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166742025.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:53 Heat of formation + Delta-G solvation = 15.027304 kcal Electronic energy + Delta-G solvation = -22916.242510 eV Core-core repulsion = 19479.882107 eV Total energy + Delta-G solvation = -3436.360403 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.129 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -49.82342 -42.74249 -40.26597 -38.70956 -35.75688 -33.79708 -32.22604 -31.99943 -30.62585 -29.81466 -27.01060 -25.58991 -24.31158 -23.21938 -23.04321 -21.62689 -20.51152 -19.71598 -18.81618 -18.28589 -17.66411 -16.91558 -16.82753 -16.48134 -16.11159 -15.78411 -15.65359 -15.20626 -15.02338 -14.72347 -14.49617 -14.22899 -14.07191 -13.63497 -13.43396 -13.32904 -13.12380 -12.85186 -12.69798 -12.57167 -11.94785 -11.81282 -11.53387 -11.15332 -10.99691 -10.87974 -10.66124 -10.39759 -10.21806 -9.54732 -8.53623 -8.09531 -6.22340 -0.22022 0.30294 1.42431 1.43334 1.51022 1.67262 2.01101 2.37178 2.48056 2.74206 3.17435 3.18170 3.47148 3.56027 3.78491 4.03180 4.07269 4.10450 4.19006 4.34862 4.47719 4.54376 4.63179 4.74915 4.78211 4.86793 4.91449 5.00959 5.09718 5.27079 5.39555 5.47264 5.48956 5.62425 5.69496 5.74890 5.99850 6.12948 6.19776 6.38454 6.48180 6.86278 6.98046 7.45078 8.95283 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.025831 B = 0.004306 C = 0.003774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1083.722772 B = 6500.498898 C = 7417.701324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.020 3.980 3 Si 0.952 3.048 4 H -0.274 1.274 5 H -0.281 1.281 6 H -0.273 1.273 7 C -0.538 4.538 8 H 0.047 0.953 9 C 0.052 3.948 10 H 0.001 0.999 11 C -0.107 4.107 12 C -0.109 4.109 13 C 0.069 3.931 14 N -0.480 5.480 15 C 0.316 3.684 16 N -0.518 5.518 17 C 0.049 3.951 18 C 0.048 3.952 19 F -0.134 7.134 20 C -0.111 4.111 21 C -0.222 4.222 22 C 0.099 3.901 23 N -0.564 5.564 24 H 0.433 0.567 25 C 0.039 3.961 26 C 0.102 3.898 27 H 0.262 0.738 28 H 0.024 0.976 29 H 0.066 0.934 30 H 0.087 0.913 31 H 0.064 0.936 32 H 0.095 0.905 33 H 0.036 0.964 34 H 0.179 0.821 35 H 0.172 0.828 36 H 0.231 0.769 37 H 0.025 0.975 38 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.319 -20.037 2.324 20.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.179 4.179 3 Si 0.777 3.223 4 H -0.200 1.200 5 H -0.206 1.206 6 H -0.198 1.198 7 C -0.576 4.576 8 H 0.065 0.935 9 C 0.033 3.967 10 H 0.019 0.981 11 C -0.145 4.145 12 C -0.146 4.146 13 C -0.057 4.057 14 N -0.197 5.197 15 C 0.074 3.926 16 N -0.233 5.233 17 C -0.101 4.101 18 C 0.024 3.976 19 F -0.113 7.113 20 C -0.124 4.124 21 C -0.247 4.247 22 C -0.031 4.031 23 N -0.168 5.168 24 H 0.274 0.726 25 C -0.074 4.074 26 C -0.024 4.024 27 H 0.071 0.929 28 H 0.043 0.957 29 H 0.085 0.915 30 H 0.106 0.894 31 H 0.083 0.917 32 H 0.113 0.887 33 H 0.054 0.946 34 H 0.196 0.804 35 H 0.190 0.810 36 H 0.248 0.752 37 H 0.044 0.956 38 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -1.560 -19.005 1.954 19.169 hybrid contribution 0.804 0.653 0.298 1.078 sum -0.756 -18.353 2.252 18.506 Atomic orbital electron populations 1.69986 1.06922 1.27227 1.50965 1.25625 0.95686 1.02003 0.94616 0.85712 0.78506 0.79318 0.78718 1.19983 1.20602 1.19786 1.21407 0.92896 0.92102 1.51229 0.93474 1.18660 0.92842 0.90945 0.94273 0.98082 1.21505 0.99243 0.96635 0.97164 1.21638 0.96883 0.93664 1.02448 1.22272 0.95057 1.00401 0.87937 1.59315 1.21847 1.01753 1.36779 1.19431 0.88216 0.88058 0.96864 1.67696 1.01300 1.35530 1.18786 1.22214 1.00460 0.86274 1.01189 1.17704 0.85428 0.85781 1.08677 1.91444 1.66176 1.60011 1.93664 1.19616 0.91462 0.95968 1.05329 1.21868 0.91678 0.96829 1.14278 1.22846 0.99709 0.82511 0.98075 1.42111 1.06310 1.07200 1.61172 0.72574 1.18354 0.87369 0.91921 1.09772 1.21793 0.94878 0.86162 0.99606 0.92918 0.95676 0.91541 0.89438 0.91714 0.88731 0.94559 0.80443 0.81049 0.75220 0.95614 0.92698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.07 11.36 21.45 0.24 -51.83 16 2 C 0.02 1.11 5.30 84.66 0.45 1.56 16 3 Si 0.95 44.04 29.54 68.60 2.03 46.06 16 4 H -0.27 -12.52 7.11 99.48 0.71 -11.82 16 5 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 6 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 7 C -0.54 -30.32 8.56 25.60 0.22 -30.11 16 8 H 0.05 2.66 7.74 -2.91 -0.02 2.64 16 9 C 0.05 2.64 2.26 -11.49 -0.03 2.61 16 10 H 0.00 0.06 8.14 -2.38 -0.02 0.04 16 11 C -0.11 -4.93 5.03 30.67 0.15 -4.77 16 12 C -0.11 -3.70 6.09 30.65 0.19 -3.51 16 13 C 0.07 2.15 5.25 86.32 0.45 2.61 16 14 N -0.48 -17.89 4.69 -701.36 -3.29 -21.18 16 15 C 0.32 11.13 6.44 133.18 0.86 11.98 16 16 N -0.52 -19.22 8.68 -193.49 -1.68 -20.90 16 17 C 0.05 1.53 11.09 84.22 0.93 2.47 16 18 C 0.05 1.40 7.34 22.38 0.16 1.56 16 19 F -0.13 -3.69 17.29 44.97 0.78 -2.91 16 20 C -0.11 -3.04 6.43 -20.19 -0.13 -3.17 16 21 C -0.22 -4.15 11.07 23.42 0.26 -3.89 16 22 C 0.10 1.29 11.82 83.08 0.98 2.27 16 23 N -0.56 -10.63 5.44 -187.20 -1.02 -11.65 16 24 H 0.43 6.47 7.35 -92.71 -0.68 5.79 16 25 C 0.04 1.11 6.55 39.18 0.26 1.36 16 26 C 0.10 4.63 3.88 86.32 0.34 4.96 16 27 H 0.26 14.23 8.31 -92.71 -0.77 13.46 16 28 H 0.02 1.16 8.14 -2.39 -0.02 1.14 16 29 H 0.07 3.44 6.17 -2.38 -0.01 3.42 16 30 H 0.09 2.45 8.14 -2.38 -0.02 2.43 16 31 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 32 H 0.09 2.19 5.17 -2.39 -0.01 2.18 16 33 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 34 H 0.18 4.65 8.06 -2.91 -0.02 4.62 16 35 H 0.17 2.41 8.06 -2.91 -0.02 2.39 16 36 H 0.23 0.48 8.06 -2.91 -0.02 0.46 16 37 H 0.03 1.21 8.12 -2.38 -0.02 1.19 16 38 H 0.05 2.65 7.72 -2.39 -0.02 2.64 16 Total: -1.00 -68.60 310.89 2.57 -66.03 By element: Atomic # 1 Polarization: 10.02 SS G_CDS: 0.41 Total: 10.43 kcal Atomic # 6 Polarization: -19.16 SS G_CDS: 5.10 Total: -14.06 kcal Atomic # 7 Polarization: -99.81 SS G_CDS: -5.74 Total: -105.55 kcal Atomic # 9 Polarization: -3.69 SS G_CDS: 0.78 Total: -2.91 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.06 kcal Total: -68.60 2.57 -66.03 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166742025.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.054 kcal (2) G-P(sol) polarization free energy of solvation -68.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.027 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds