Wall clock time and date at job start Tue Mar 31 2020 06:34:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.47486 * 2 1 4 4 C 1.52995 * 109.47629 * 180.02562 * 3 2 1 5 5 N 1.46493 * 109.47651 * 179.97438 * 4 3 2 6 6 C 1.36844 * 120.00101 * 270.00073 * 5 4 3 7 7 H 1.08004 * 119.99999 * 143.55325 * 6 5 4 8 8 C 1.38911 * 119.99629 * 323.55329 * 6 5 4 9 9 N 1.31481 * 119.99698 * 153.63971 * 8 6 5 10 10 Si 1.86794 * 120.00264 * 333.64038 * 8 6 5 11 11 H 1.48494 * 109.47370 * 95.30097 * 10 8 6 12 12 H 1.48504 * 109.46874 * 215.29802 * 10 8 6 13 13 H 1.48498 * 109.47409 * 335.29692 * 10 8 6 14 14 C 1.37852 * 120.00178 * 89.99259 * 5 4 3 15 15 N 1.32734 * 120.91494 * 87.32135 * 14 5 4 16 16 C 1.32279 * 121.48258 * 180.28118 * 15 14 5 17 17 N 1.31251 * 122.97760 * 359.46908 * 16 15 14 18 18 C 1.34061 * 120.47050 * 0.26014 * 17 16 15 19 19 C 1.40394 * 121.99789 * 180.02562 * 18 17 16 20 20 F 1.35098 * 120.22915 * 359.97438 * 19 18 17 21 21 C 1.36515 * 119.53095 * 179.97438 * 19 18 17 22 22 C 1.39186 * 121.00675 * 359.97438 * 21 19 18 23 23 C 1.36415 * 120.93178 * 0.02936 * 22 21 19 24 24 C 1.39912 * 119.55311 * 359.94985 * 23 22 21 25 25 H 1.08997 * 109.47435 * 180.02562 * 1 2 3 26 26 H 1.09007 * 109.47040 * 300.00026 * 1 2 3 27 27 H 1.08994 * 109.47433 * 59.99600 * 1 2 3 28 28 H 1.09002 * 109.47161 * 239.99532 * 2 1 3 29 29 H 1.09003 * 109.47440 * 119.99798 * 2 1 3 30 30 H 1.09002 * 109.47302 * 59.99619 * 3 2 1 31 31 H 1.09003 * 109.46616 * 300.00303 * 3 2 1 32 32 H 1.09002 * 109.47389 * 59.99305 * 4 3 2 33 33 H 1.09003 * 109.47069 * 299.99658 * 4 3 2 34 34 H 0.96995 * 120.00056 * 180.02562 * 9 8 6 35 35 H 1.07998 * 118.50960 * 179.75417 * 16 15 14 36 36 H 1.08005 * 119.49511 * 179.97438 * 21 19 18 37 37 H 1.07999 * 119.53212 * 179.97438 * 22 21 19 38 38 H 1.08000 * 120.22186 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0584 2.8236 -0.0013 6 6 4.2860 3.4684 -1.1866 7 1 4.0694 4.5225 -1.2783 8 6 4.7957 2.7670 -2.2720 9 7 4.5465 3.1779 -3.4958 10 14 5.8351 1.2403 -1.9927 11 1 4.9743 0.0332 -2.0771 12 1 6.8946 1.1662 -3.0306 13 1 6.4627 1.3077 -0.6486 14 6 4.2886 3.4739 1.1923 15 7 5.4595 3.3729 1.8091 16 6 5.6907 3.9875 2.9574 17 7 4.7978 4.7392 3.5578 18 6 3.5829 4.9137 3.0187 19 6 2.6040 5.7110 3.6328 20 9 2.8684 6.3318 4.8032 21 6 1.3831 5.8543 3.0390 22 6 1.0938 5.2225 1.8331 23 6 2.0224 4.4410 1.2104 24 6 3.2841 4.2729 1.7912 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 1.8933 -0.5139 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 1.6767 1.9564 0.8900 31 1 1.6766 1.9563 -0.8900 32 1 3.9330 0.9287 -0.8908 33 1 3.9337 0.9286 0.8892 34 1 4.9021 2.6880 -4.2537 35 1 6.6596 3.8691 3.4196 36 1 0.6304 6.4674 3.5122 37 1 0.1199 5.3520 1.3845 38 1 1.7855 3.9558 0.2751 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167129030.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:27 Heat of formation + Delta-G solvation = 40.383741 kcal Electronic energy + Delta-G solvation = -23197.871508 eV Core-core repulsion = 19762.610642 eV Total energy + Delta-G solvation = -3435.260866 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.129 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -48.63689 -40.83446 -37.30322 -37.07518 -34.39457 -32.89871 -31.71929 -30.75251 -29.66552 -28.33196 -25.24301 -24.02369 -23.86121 -22.75082 -21.13122 -20.56729 -18.53526 -17.94906 -17.35785 -16.65862 -15.82117 -15.59471 -15.31551 -15.08316 -14.84585 -14.72441 -14.07170 -13.88788 -13.58406 -13.21068 -13.05491 -12.74510 -12.33166 -12.14994 -11.98644 -11.70438 -11.66865 -11.47473 -11.16978 -10.71443 -10.64438 -10.48696 -10.42561 -10.17624 -9.97296 -9.75211 -9.06399 -9.00979 -8.62584 -7.86172 -7.48257 -6.35859 -3.82254 0.52124 0.97647 2.11568 3.14786 3.21015 3.33806 3.48085 3.96392 4.19658 4.29618 4.37628 4.45712 4.77752 4.92017 5.04495 5.13713 5.27009 5.28822 5.33874 5.45263 5.49086 5.69375 5.72997 5.92761 6.03984 6.09205 6.12339 6.14434 6.21417 6.27802 6.33837 6.44190 6.51604 6.60290 6.71110 6.87134 6.92491 7.47176 7.66257 8.06404 8.55333 8.68185 9.30085 9.61115 10.75861 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.014647 B = 0.006666 C = 0.005496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1911.157558 B = 4199.199466 C = 5093.342220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.125 4.125 3 C -0.139 4.139 4 C 0.140 3.860 5 N -0.549 5.549 6 C -0.285 4.285 7 H 0.088 0.912 8 C 0.059 3.941 9 N -0.869 5.869 10 Si 0.866 3.134 11 H -0.280 1.280 12 H -0.294 1.294 13 H -0.254 1.254 14 C 0.504 3.496 15 N -0.552 5.552 16 C 0.315 3.685 17 N -0.534 5.534 18 C 0.137 3.863 19 C 0.094 3.906 20 F -0.130 7.130 21 C -0.116 4.116 22 C -0.129 4.129 23 C -0.047 4.047 24 C -0.149 4.149 25 H 0.047 0.953 26 H 0.051 0.949 27 H 0.055 0.945 28 H 0.060 0.940 29 H 0.054 0.946 30 H 0.057 0.943 31 H 0.076 0.924 32 H 0.068 0.932 33 H 0.044 0.956 34 H 0.271 0.729 35 H 0.188 0.812 36 H 0.138 0.862 37 H 0.135 0.865 38 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.667 -1.325 9.012 11.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.163 4.163 3 C -0.178 4.178 4 C 0.017 3.983 5 N -0.268 5.268 6 C -0.411 4.411 7 H 0.106 0.894 8 C -0.146 4.146 9 N -0.506 5.506 10 Si 0.694 3.306 11 H -0.207 1.207 12 H -0.221 1.221 13 H -0.178 1.178 14 C 0.257 3.743 15 N -0.271 5.271 16 C 0.024 3.976 17 N -0.250 5.250 18 C 0.008 3.992 19 C 0.073 3.927 20 F -0.108 7.108 21 C -0.138 4.138 22 C -0.147 4.147 23 C -0.068 4.068 24 C -0.158 4.158 25 H 0.066 0.934 26 H 0.070 0.930 27 H 0.074 0.926 28 H 0.079 0.921 29 H 0.073 0.927 30 H 0.075 0.925 31 H 0.095 0.905 32 H 0.086 0.914 33 H 0.063 0.937 34 H 0.082 0.918 35 H 0.204 0.796 36 H 0.155 0.845 37 H 0.153 0.847 38 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -6.701 -1.347 9.362 11.592 hybrid contribution 0.174 -0.517 -0.188 0.577 sum -6.527 -1.864 9.174 11.412 Atomic orbital electron populations 1.21742 0.96177 1.00896 1.01735 1.21496 0.95574 0.97686 1.01540 1.22209 0.97355 0.95733 1.02503 1.21396 0.92792 0.83701 1.00449 1.41463 1.73129 1.12863 0.99335 1.18643 1.41762 0.96824 0.83876 0.89449 1.25402 0.96111 0.98319 0.94812 1.69798 1.41910 1.40895 0.97987 0.87094 0.81346 0.82826 0.79352 1.20700 1.22145 1.17796 1.19105 0.85003 0.85368 0.84854 1.68781 1.24415 1.24021 1.09847 1.24739 0.97755 0.87082 0.87986 1.68721 1.01469 1.19672 1.35106 1.18853 0.92206 0.95995 0.92174 1.16950 0.93773 0.97591 0.84376 1.91480 1.94478 1.80265 1.44592 1.20910 0.95212 1.00941 0.96745 1.20713 1.00494 0.98570 0.94961 1.21291 0.90759 0.95115 0.99591 1.19902 0.98024 1.01597 0.96248 0.93375 0.93035 0.92612 0.92115 0.92680 0.92472 0.90521 0.91405 0.93722 0.91849 0.79567 0.84453 0.84715 0.82929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.75 9.91 37.16 0.37 -1.39 16 2 C -0.12 -1.75 5.93 -26.73 -0.16 -1.91 16 3 C -0.14 -2.30 4.33 -26.73 -0.12 -2.41 16 4 C 0.14 2.81 4.53 -4.05 -0.02 2.79 16 5 N -0.55 -12.25 1.46 -114.52 -0.17 -12.42 16 6 C -0.28 -7.30 9.85 -15.07 -0.15 -7.45 16 7 H 0.09 2.44 8.06 -52.48 -0.42 2.01 16 8 C 0.06 1.56 5.23 -17.45 -0.09 1.47 16 9 N -0.87 -24.08 13.96 55.49 0.77 -23.31 16 10 Si 0.87 20.63 25.30 -169.99 -4.30 16.33 16 11 H -0.28 -6.31 6.62 56.52 0.37 -5.94 16 12 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 13 H -0.25 -6.24 7.11 56.52 0.40 -5.84 16 14 C 0.50 10.79 6.12 -154.88 -0.95 9.84 16 15 N -0.55 -11.77 10.43 -13.52 -0.14 -11.91 16 16 C 0.31 5.78 12.22 -92.20 -1.13 4.66 16 17 N -0.53 -10.20 10.35 -12.60 -0.13 -10.33 16 18 C 0.14 2.57 6.62 -84.78 -0.56 2.01 16 19 C 0.09 1.54 7.31 -39.39 -0.29 1.25 16 20 F -0.13 -2.15 17.16 2.25 0.04 -2.12 16 21 C -0.12 -1.55 9.92 -39.85 -0.40 -1.94 16 22 C -0.13 -1.71 9.96 -39.89 -0.40 -2.11 16 23 C -0.05 -0.78 8.28 -39.61 -0.33 -1.10 16 24 C -0.15 -2.85 5.76 -106.67 -0.61 -3.46 16 25 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.05 0.57 8.14 -51.92 -0.42 0.15 16 27 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 28 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.06 0.90 6.53 -51.93 -0.34 0.56 16 31 H 0.08 1.36 8.07 -51.93 -0.42 0.94 16 32 H 0.07 1.46 3.43 -51.93 -0.18 1.29 16 33 H 0.04 0.85 8.04 -51.93 -0.42 0.43 16 34 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 35 H 0.19 2.68 8.06 -52.49 -0.42 2.26 16 36 H 0.14 1.38 8.06 -52.48 -0.42 0.96 16 37 H 0.13 1.35 8.06 -52.49 -0.42 0.93 16 38 H 0.15 2.59 6.07 -52.49 -0.32 2.27 16 LS Contribution 318.87 15.07 4.81 4.81 Total: -1.00 -28.97 318.87 -8.58 -37.56 By element: Atomic # 1 Polarization: 5.79 SS G_CDS: -4.64 Total: 1.15 kcal Atomic # 6 Polarization: 5.07 SS G_CDS: -4.82 Total: 0.24 kcal Atomic # 7 Polarization: -58.30 SS G_CDS: 0.34 Total: -57.96 kcal Atomic # 9 Polarization: -2.15 SS G_CDS: 0.04 Total: -2.12 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -4.30 Total: 16.33 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -28.97 -8.58 -37.56 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167129030.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.940 kcal (2) G-P(sol) polarization free energy of solvation -28.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.556 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds