Wall clock time and date at job start Tue Mar 31 2020 06:34:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.47486 * 2 1 4 4 C 1.52995 * 109.47629 * 180.02562 * 3 2 1 5 5 N 1.46493 * 109.47651 * 179.97438 * 4 3 2 6 6 C 1.36844 * 120.00101 * 270.00073 * 5 4 3 7 7 H 1.08004 * 119.99999 * 143.55325 * 6 5 4 8 8 C 1.38911 * 119.99629 * 323.55329 * 6 5 4 9 9 N 1.31481 * 119.99698 * 153.63971 * 8 6 5 10 10 Si 1.86794 * 120.00264 * 333.64038 * 8 6 5 11 11 H 1.48494 * 109.47370 * 95.30097 * 10 8 6 12 12 H 1.48504 * 109.46874 * 215.29802 * 10 8 6 13 13 H 1.48498 * 109.47409 * 335.29692 * 10 8 6 14 14 C 1.37852 * 120.00178 * 89.99259 * 5 4 3 15 15 N 1.32734 * 120.91494 * 87.32135 * 14 5 4 16 16 C 1.32279 * 121.48258 * 180.28118 * 15 14 5 17 17 N 1.31251 * 122.97760 * 359.46908 * 16 15 14 18 18 C 1.34061 * 120.47050 * 0.26014 * 17 16 15 19 19 C 1.40394 * 121.99789 * 180.02562 * 18 17 16 20 20 F 1.35098 * 120.22915 * 359.97438 * 19 18 17 21 21 C 1.36515 * 119.53095 * 179.97438 * 19 18 17 22 22 C 1.39186 * 121.00675 * 359.97438 * 21 19 18 23 23 C 1.36415 * 120.93178 * 0.02936 * 22 21 19 24 24 C 1.39912 * 119.55311 * 359.94985 * 23 22 21 25 25 H 1.08997 * 109.47435 * 180.02562 * 1 2 3 26 26 H 1.09007 * 109.47040 * 300.00026 * 1 2 3 27 27 H 1.08994 * 109.47433 * 59.99600 * 1 2 3 28 28 H 1.09002 * 109.47161 * 239.99532 * 2 1 3 29 29 H 1.09003 * 109.47440 * 119.99798 * 2 1 3 30 30 H 1.09002 * 109.47302 * 59.99619 * 3 2 1 31 31 H 1.09003 * 109.46616 * 300.00303 * 3 2 1 32 32 H 1.09002 * 109.47389 * 59.99305 * 4 3 2 33 33 H 1.09003 * 109.47069 * 299.99658 * 4 3 2 34 34 H 0.96995 * 120.00056 * 180.02562 * 9 8 6 35 35 H 1.07998 * 118.50960 * 179.75417 * 16 15 14 36 36 H 1.08005 * 119.49511 * 179.97438 * 21 19 18 37 37 H 1.07999 * 119.53212 * 179.97438 * 22 21 19 38 38 H 1.08000 * 120.22186 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0584 2.8236 -0.0013 6 6 4.2860 3.4684 -1.1866 7 1 4.0694 4.5225 -1.2783 8 6 4.7957 2.7670 -2.2720 9 7 4.5465 3.1779 -3.4958 10 14 5.8351 1.2403 -1.9927 11 1 4.9743 0.0332 -2.0771 12 1 6.8946 1.1662 -3.0306 13 1 6.4627 1.3077 -0.6486 14 6 4.2886 3.4739 1.1923 15 7 5.4595 3.3729 1.8091 16 6 5.6907 3.9875 2.9574 17 7 4.7978 4.7392 3.5578 18 6 3.5829 4.9137 3.0187 19 6 2.6040 5.7110 3.6328 20 9 2.8684 6.3318 4.8032 21 6 1.3831 5.8543 3.0390 22 6 1.0938 5.2225 1.8331 23 6 2.0224 4.4410 1.2104 24 6 3.2841 4.2729 1.7912 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 1.8933 -0.5139 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 1.6767 1.9564 0.8900 31 1 1.6766 1.9563 -0.8900 32 1 3.9330 0.9287 -0.8908 33 1 3.9337 0.9286 0.8892 34 1 4.9021 2.6880 -4.2537 35 1 6.6596 3.8691 3.4196 36 1 0.6304 6.4674 3.5122 37 1 0.1199 5.3520 1.3845 38 1 1.7855 3.9558 0.2751 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167129030.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:27 Heat of formation + Delta-G solvation = 25.824909 kcal Electronic energy + Delta-G solvation = -23198.502826 eV Core-core repulsion = 19762.610642 eV Total energy + Delta-G solvation = -3435.892184 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.129 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -49.90589 -42.27568 -38.79760 -38.48814 -35.68209 -34.62584 -33.37657 -32.12609 -30.96978 -29.73469 -26.96721 -25.37540 -25.27893 -24.16812 -22.47352 -21.93651 -19.96759 -19.31934 -19.04382 -18.23888 -17.41154 -16.94871 -16.76029 -16.53098 -16.12071 -16.02456 -15.55674 -15.33451 -14.89775 -14.70102 -14.52250 -14.40273 -13.76757 -13.51128 -13.24051 -13.03993 -12.96650 -12.86510 -12.83642 -12.19695 -12.02952 -11.93541 -11.82942 -11.72596 -11.59668 -11.33412 -10.82571 -10.31671 -10.29713 -9.26768 -9.18255 -8.37467 -5.82722 -0.85747 -0.35795 0.70279 1.23738 1.38482 1.53958 1.93395 2.29752 2.44366 2.88359 2.90963 2.97965 3.13540 3.60335 3.63703 3.82488 3.97331 4.04561 4.14396 4.22492 4.34159 4.39369 4.40582 4.61497 4.71782 4.86184 4.92864 4.99237 5.01968 5.06546 5.14531 5.23051 5.29454 5.35860 5.45365 5.54033 5.67717 5.74323 5.99181 6.09497 6.74266 7.15060 7.37741 7.73061 8.78985 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.014647 B = 0.006666 C = 0.005496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1911.157558 B = 4199.199466 C = 5093.342220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.123 4.123 3 C -0.125 4.125 4 C 0.137 3.863 5 N -0.555 5.555 6 C -0.274 4.274 7 H 0.054 0.946 8 C 0.019 3.981 9 N -0.913 5.913 10 Si 0.918 3.082 11 H -0.261 1.261 12 H -0.301 1.301 13 H -0.268 1.268 14 C 0.483 3.517 15 N -0.580 5.580 16 C 0.307 3.693 17 N -0.539 5.539 18 C 0.113 3.887 19 C 0.077 3.923 20 F -0.132 7.132 21 C -0.089 4.089 22 C -0.099 4.099 23 C -0.067 4.067 24 C -0.159 4.159 25 H 0.064 0.936 26 H 0.060 0.940 27 H 0.052 0.948 28 H 0.053 0.947 29 H 0.064 0.936 30 H 0.066 0.934 31 H 0.060 0.940 32 H 0.050 0.950 33 H 0.050 0.950 34 H 0.272 0.728 35 H 0.221 0.779 36 H 0.184 0.816 37 H 0.180 0.820 38 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.053 -1.300 10.980 14.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.162 4.162 3 C -0.164 4.164 4 C 0.014 3.986 5 N -0.276 5.276 6 C -0.402 4.402 7 H 0.071 0.929 8 C -0.183 4.183 9 N -0.553 5.553 10 Si 0.746 3.254 11 H -0.187 1.187 12 H -0.228 1.228 13 H -0.192 1.192 14 C 0.236 3.764 15 N -0.299 5.299 16 C 0.017 3.983 17 N -0.254 5.254 18 C -0.015 4.015 19 C 0.057 3.943 20 F -0.111 7.111 21 C -0.110 4.110 22 C -0.117 4.117 23 C -0.087 4.087 24 C -0.167 4.167 25 H 0.083 0.917 26 H 0.079 0.921 27 H 0.071 0.929 28 H 0.072 0.928 29 H 0.083 0.917 30 H 0.085 0.915 31 H 0.078 0.922 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.081 0.919 35 H 0.237 0.763 36 H 0.201 0.799 37 H 0.197 0.803 38 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -9.101 -1.333 11.370 14.625 hybrid contribution 0.785 -0.378 -0.581 1.048 sum -8.316 -1.711 10.788 13.729 Atomic orbital electron populations 1.21702 0.94123 1.02160 1.02092 1.21497 0.97358 0.95601 1.01704 1.22047 0.94664 0.97614 1.02101 1.21454 0.95092 0.82350 0.99726 1.41385 1.73934 1.13347 0.98902 1.18309 1.40876 0.95403 0.85604 0.92877 1.25791 0.97175 1.00714 0.94571 1.69876 1.43981 1.42815 0.98618 0.86270 0.79964 0.81317 0.77876 1.18694 1.22845 1.19232 1.19293 0.86049 0.85570 0.85522 1.68676 1.24539 1.25412 1.11238 1.25285 0.99005 0.86846 0.87143 1.68761 1.01937 1.19469 1.35185 1.19226 0.92784 0.96987 0.92526 1.17190 0.94446 0.97956 0.84709 1.91476 1.94617 1.80265 1.44713 1.21425 0.94520 0.99272 0.95772 1.21214 1.01188 0.95296 0.93982 1.21334 0.90740 0.96836 0.99817 1.19905 0.98559 1.01676 0.96559 0.91688 0.92092 0.92851 0.92845 0.91678 0.91501 0.92171 0.93198 0.93177 0.91881 0.76297 0.79881 0.80256 0.83905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.04 9.91 71.98 0.71 -2.32 16 2 C -0.12 -3.27 5.93 30.59 0.18 -3.09 16 3 C -0.13 -4.08 4.33 30.59 0.13 -3.94 16 4 C 0.14 5.51 4.53 86.38 0.39 5.90 16 5 N -0.56 -25.42 1.46 -516.24 -0.75 -26.18 16 6 C -0.27 -14.65 9.85 84.07 0.83 -13.82 16 7 H 0.05 3.15 8.06 -2.91 -0.02 3.12 16 8 C 0.02 1.04 5.23 84.91 0.44 1.49 16 9 N -0.91 -52.56 13.96 21.66 0.30 -52.26 16 10 Si 0.92 44.00 25.30 68.60 1.74 45.74 16 11 H -0.26 -11.52 6.62 99.48 0.66 -10.86 16 12 H -0.30 -14.55 7.11 99.48 0.71 -13.84 16 13 H -0.27 -13.27 7.11 99.48 0.71 -12.56 16 14 C 0.48 21.04 6.12 133.98 0.82 21.86 16 15 N -0.58 -25.10 10.43 -196.68 -2.05 -27.15 16 16 C 0.31 11.24 12.22 180.90 2.21 13.45 16 17 N -0.54 -20.23 10.35 -193.77 -2.00 -22.24 16 18 C 0.11 4.14 6.62 40.17 0.27 4.40 16 19 C 0.08 2.33 7.31 22.39 0.16 2.49 16 20 F -0.13 -4.06 17.16 44.97 0.77 -3.28 16 21 C -0.09 -1.92 9.92 22.09 0.22 -1.70 16 22 C -0.10 -2.19 9.96 22.07 0.22 -1.97 16 23 C -0.07 -2.09 8.28 22.25 0.18 -1.90 16 24 C -0.16 -6.01 5.76 -21.19 -0.12 -6.13 16 25 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 26 H 0.06 1.17 8.14 -2.38 -0.02 1.15 16 27 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 28 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 29 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 30 H 0.07 2.03 6.53 -2.39 -0.02 2.01 16 31 H 0.06 2.15 8.07 -2.39 -0.02 2.13 16 32 H 0.05 2.18 3.43 -2.39 -0.01 2.17 16 33 H 0.05 1.92 8.04 -2.39 -0.02 1.90 16 34 H 0.27 14.77 8.31 -92.71 -0.77 14.00 16 35 H 0.22 6.14 8.06 -2.91 -0.02 6.11 16 36 H 0.18 2.40 8.06 -2.91 -0.02 2.38 16 37 H 0.18 2.46 8.06 -2.91 -0.02 2.44 16 38 H 0.14 4.78 6.07 -2.91 -0.02 4.76 16 Total: -1.00 -66.09 318.87 5.69 -60.41 By element: Atomic # 1 Polarization: 9.22 SS G_CDS: 1.03 Total: 10.25 kcal Atomic # 6 Polarization: 8.06 SS G_CDS: 6.65 Total: 14.71 kcal Atomic # 7 Polarization: -123.31 SS G_CDS: -4.51 Total: -127.82 kcal Atomic # 9 Polarization: -4.06 SS G_CDS: 0.77 Total: -3.28 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 1.74 Total: 45.74 kcal Total: -66.09 5.69 -60.41 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167129030.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.235 kcal (2) G-P(sol) polarization free energy of solvation -66.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.410 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds