Wall clock time and date at job start Tue Mar 31 2020 06:34:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.47047 * 2 1 4 4 C 1.52999 * 109.47085 * 179.97438 * 3 2 1 5 5 N 1.46498 * 109.47364 * 180.02562 * 4 3 2 6 6 C 1.36947 * 120.00003 * 95.48192 * 5 4 3 7 7 H 1.08008 * 120.00194 * 214.09628 * 6 5 4 8 8 C 1.38841 * 119.99969 * 34.09259 * 6 5 4 9 9 N 1.31528 * 120.00161 * 21.73303 * 8 6 5 10 10 Si 1.86803 * 119.99951 * 201.72948 * 8 6 5 11 11 H 1.48507 * 109.46875 * 90.00270 * 10 8 6 12 12 H 1.48496 * 109.47021 * 210.00175 * 10 8 6 13 13 H 1.48506 * 109.47229 * 330.00348 * 10 8 6 14 14 C 1.38351 * 120.00140 * 275.48337 * 5 4 3 15 15 N 1.33221 * 118.68037 * 359.97438 * 14 5 4 16 16 C 1.31600 * 121.56071 * 179.97438 * 15 14 5 17 17 C 1.40805 * 118.47972 * 0.02562 * 16 15 14 18 18 C 1.40186 * 122.02217 * 180.02562 * 17 16 15 19 19 C 1.36476 * 119.49317 * 179.97438 * 18 17 16 20 20 F 1.35107 * 119.54637 * 179.97438 * 19 18 17 21 21 C 1.39527 * 120.90902 * 359.97438 * 19 18 17 22 22 C 1.36204 * 121.04558 * 359.97420 * 21 19 18 23 23 C 1.40307 * 119.62175 * 0.04573 * 22 21 19 24 24 N 1.31921 * 118.68256 * 179.73322 * 14 5 4 25 25 H 1.09003 * 109.46801 * 59.99368 * 1 2 3 26 26 H 1.08999 * 109.47139 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47126 * 300.00128 * 1 2 3 28 28 H 1.09000 * 109.47049 * 240.00387 * 2 1 3 29 29 H 1.08993 * 109.46965 * 120.00559 * 2 1 3 30 30 H 1.09000 * 109.46880 * 60.00284 * 3 2 1 31 31 H 1.08993 * 109.47694 * 300.00112 * 3 2 1 32 32 H 1.08997 * 109.47825 * 300.00602 * 4 3 2 33 33 H 1.09000 * 109.46591 * 60.00644 * 4 3 2 34 34 H 0.96998 * 120.00477 * 179.97438 * 9 8 6 35 35 H 1.08004 * 120.76256 * 179.97438 * 16 15 14 36 36 H 1.08002 * 120.25152 * 359.97438 * 18 17 16 37 37 H 1.08002 * 119.47807 * 180.02562 * 21 19 18 38 38 H 1.07994 * 120.19374 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0584 2.8237 0.0013 6 6 4.3930 3.4311 1.1822 7 1 4.2217 4.4895 1.3126 8 6 4.9523 2.6864 2.2118 9 7 5.5503 1.5449 1.9482 10 14 4.8556 3.3056 3.9716 11 1 3.6156 2.7940 4.6089 12 1 6.0374 2.8244 4.7312 13 1 4.8368 4.7905 3.9736 14 6 4.1816 3.5144 -1.1911 15 7 3.8491 2.8980 -2.3244 16 6 3.9437 3.5014 -3.4901 17 6 4.4094 4.8298 -3.5227 18 6 4.5387 5.5429 -4.7226 19 6 4.9951 6.8288 -4.6942 20 9 5.1205 7.5170 -5.8501 21 6 5.3339 7.4425 -3.4879 22 6 5.2189 6.7776 -2.3048 23 6 4.7534 5.4540 -2.2956 24 7 4.6189 4.7586 -1.1598 25 1 -0.3633 0.5140 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 1.6767 1.9563 0.8900 31 1 1.6767 1.9564 -0.8899 32 1 3.9331 0.9287 0.8907 33 1 3.9336 0.9286 -0.8892 34 1 5.9414 1.0248 2.6675 35 1 3.6710 2.9892 -4.4010 36 1 4.2790 5.0783 -5.6624 37 1 5.6924 8.4613 -3.4922 38 1 5.4847 7.2661 -1.3791 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167132555.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:34 Heat of formation + Delta-G solvation = 23.837386 kcal Electronic energy + Delta-G solvation = -22393.921374 eV Core-core repulsion = 18957.943004 eV Total energy + Delta-G solvation = -3435.978369 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.129 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -48.38384 -40.27941 -37.63572 -35.90273 -34.24257 -33.04053 -32.06665 -30.55122 -29.12681 -27.91534 -25.40545 -23.95941 -23.38385 -21.88484 -21.48551 -20.51017 -18.44430 -17.61591 -17.20854 -16.37430 -15.54379 -15.17423 -15.06657 -14.91267 -14.66492 -14.22144 -13.77836 -13.75117 -13.49930 -13.39695 -12.80841 -12.60812 -12.42086 -12.20082 -11.85313 -11.66184 -11.33269 -11.08447 -10.98765 -10.76011 -10.63494 -10.48607 -10.39317 -10.26828 -10.09282 -9.94689 -9.30064 -8.71865 -8.21825 -8.04720 -6.98906 -6.57992 -4.08173 0.94929 1.53641 2.61095 3.03423 3.09405 3.13712 3.55142 3.78685 4.28263 4.59706 4.77617 4.96170 5.04661 5.09061 5.17360 5.35742 5.37639 5.44620 5.53298 5.64545 5.80280 5.92430 6.13097 6.18064 6.20665 6.23486 6.28324 6.37555 6.44901 6.52134 6.60862 6.64653 6.66361 6.82999 7.03458 7.15179 7.28142 7.38489 7.77381 8.03046 8.28950 8.87227 9.09398 9.64442 10.32177 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.015110 B = 0.005044 C = 0.003999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1852.652481 B = 5550.004559 C = 7000.248294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.118 4.118 3 C -0.128 4.128 4 C 0.117 3.883 5 N -0.369 5.369 6 C -0.282 4.282 7 H 0.107 0.893 8 C 0.034 3.966 9 N -0.848 5.848 10 Si 0.930 3.070 11 H -0.273 1.273 12 H -0.281 1.281 13 H -0.264 1.264 14 C 0.489 3.511 15 N -0.549 5.549 16 C 0.218 3.782 17 C -0.244 4.244 18 C -0.071 4.071 19 C 0.014 3.986 20 F -0.156 7.156 21 C -0.101 4.101 22 C -0.112 4.112 23 C 0.226 3.774 24 N -0.577 5.577 25 H 0.050 0.950 26 H 0.048 0.952 27 H 0.051 0.949 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.058 0.942 31 H 0.055 0.945 32 H 0.113 0.887 33 H 0.062 0.938 34 H 0.276 0.724 35 H 0.160 0.840 36 H 0.128 0.872 37 H 0.128 0.872 38 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.416 1.262 -5.981 7.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.156 4.156 3 C -0.166 4.166 4 C -0.007 4.007 5 N -0.056 5.056 6 C -0.412 4.412 7 H 0.125 0.875 8 C -0.174 4.174 9 N -0.482 5.482 10 Si 0.756 3.244 11 H -0.199 1.199 12 H -0.206 1.206 13 H -0.188 1.188 14 C 0.138 3.862 15 N -0.266 5.266 16 C 0.030 3.970 17 C -0.254 4.254 18 C -0.093 4.093 19 C -0.007 4.007 20 F -0.135 7.135 21 C -0.123 4.123 22 C -0.132 4.132 23 C 0.087 3.913 24 N -0.306 5.306 25 H 0.070 0.930 26 H 0.067 0.933 27 H 0.070 0.930 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.074 0.926 32 H 0.131 0.869 33 H 0.081 0.919 34 H 0.086 0.914 35 H 0.177 0.823 36 H 0.146 0.854 37 H 0.146 0.854 38 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -4.420 0.316 -4.439 6.272 hybrid contribution 0.194 0.797 -0.319 0.880 sum -4.226 1.112 -4.758 6.460 Atomic orbital electron populations 1.21753 0.96465 1.00819 1.01540 1.21403 0.95124 0.97283 1.01764 1.21929 0.97112 0.95966 1.01628 1.21723 0.91674 0.82755 1.04547 1.42528 1.50828 1.11090 1.01195 1.19839 1.37869 0.96338 0.87139 0.87508 1.25570 0.94089 0.96353 1.01349 1.69975 1.29994 1.14312 1.33909 0.85846 0.78097 0.79832 0.80661 1.19867 1.20595 1.18796 1.19585 0.93202 0.87985 0.85477 1.67612 1.21403 1.38998 0.98590 1.23038 0.89345 0.89483 0.95143 1.18820 1.13869 0.98196 0.94535 1.20581 0.98242 0.92721 0.97762 1.17034 1.10445 0.91770 0.81496 1.91415 1.94781 1.79708 1.47591 1.20705 1.00207 1.00216 0.91177 1.20390 1.02249 0.92885 0.97718 1.18707 0.91263 0.93477 0.87822 1.68401 1.27161 1.07747 1.27258 0.93049 0.93272 0.93022 0.92181 0.92177 0.92290 0.92608 0.86942 0.91908 0.91402 0.82331 0.85375 0.85429 0.84741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.92 9.91 37.16 0.37 -1.55 16 2 C -0.12 -1.79 5.93 -26.73 -0.16 -1.95 16 3 C -0.13 -2.39 5.51 -26.73 -0.15 -2.54 16 4 C 0.12 2.57 4.87 -4.04 -0.02 2.55 16 5 N -0.37 -9.11 2.64 -117.06 -0.31 -9.42 16 6 C -0.28 -7.23 8.95 -15.04 -0.13 -7.37 16 7 H 0.11 2.82 7.62 -52.48 -0.40 2.42 16 8 C 0.03 0.83 4.93 -17.46 -0.09 0.75 16 9 N -0.85 -21.39 11.32 55.49 0.63 -20.76 16 10 Si 0.93 19.06 29.61 -169.99 -5.03 14.03 16 11 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 12 H -0.28 -5.72 7.11 56.52 0.40 -5.31 16 13 H -0.26 -5.41 7.11 56.52 0.40 -5.01 16 14 C 0.49 11.87 8.10 -322.68 -2.61 9.26 16 15 N -0.55 -11.77 9.11 -13.49 -0.12 -11.90 16 16 C 0.22 3.90 11.15 -16.68 -0.19 3.71 16 17 C -0.24 -4.49 5.74 -106.79 -0.61 -5.11 16 18 C -0.07 -1.11 9.77 -39.49 -0.39 -1.49 16 19 C 0.01 0.22 7.24 -39.74 -0.29 -0.07 16 20 F -0.16 -2.39 17.24 2.25 0.04 -2.35 16 21 C -0.10 -1.56 9.92 -39.83 -0.40 -1.95 16 22 C -0.11 -1.98 10.01 -39.54 -0.40 -2.38 16 23 C 0.23 4.72 6.62 -84.81 -0.56 4.16 16 24 N -0.58 -13.97 9.32 -11.91 -0.11 -14.08 16 25 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 30 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 31 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 32 H 0.11 2.64 5.33 -51.93 -0.28 2.36 16 33 H 0.06 1.39 7.49 -51.93 -0.39 1.00 16 34 H 0.28 6.49 8.31 -40.82 -0.34 6.15 16 35 H 0.16 2.09 8.06 -52.48 -0.42 1.67 16 36 H 0.13 1.60 8.06 -52.49 -0.42 1.18 16 37 H 0.13 1.59 8.06 -52.49 -0.42 1.17 16 38 H 0.13 2.24 8.06 -52.49 -0.42 1.82 16 LS Contribution 327.19 15.07 4.93 4.93 Total: -1.00 -27.78 327.19 -10.45 -38.23 By element: Atomic # 1 Polarization: 10.15 SS G_CDS: -4.85 Total: 5.29 kcal Atomic # 6 Polarization: 1.64 SS G_CDS: -5.62 Total: -3.97 kcal Atomic # 7 Polarization: -56.24 SS G_CDS: 0.08 Total: -56.15 kcal Atomic # 9 Polarization: -2.39 SS G_CDS: 0.04 Total: -2.35 kcal Atomic # 14 Polarization: 19.06 SS G_CDS: -5.03 Total: 14.03 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -27.78 -10.45 -38.23 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167132555.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.063 kcal (2) G-P(sol) polarization free energy of solvation -27.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.225 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds