Wall clock time and date at job start Tue Mar 31 2020 06:34:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.47047 * 2 1 4 4 C 1.52999 * 109.47085 * 179.97438 * 3 2 1 5 5 N 1.46498 * 109.47364 * 180.02562 * 4 3 2 6 6 C 1.36947 * 120.00003 * 95.48192 * 5 4 3 7 7 H 1.08008 * 120.00194 * 214.09628 * 6 5 4 8 8 C 1.38841 * 119.99969 * 34.09259 * 6 5 4 9 9 N 1.31528 * 120.00161 * 21.73303 * 8 6 5 10 10 Si 1.86803 * 119.99951 * 201.72948 * 8 6 5 11 11 H 1.48507 * 109.46875 * 90.00270 * 10 8 6 12 12 H 1.48496 * 109.47021 * 210.00175 * 10 8 6 13 13 H 1.48506 * 109.47229 * 330.00348 * 10 8 6 14 14 C 1.38351 * 120.00140 * 275.48337 * 5 4 3 15 15 N 1.33221 * 118.68037 * 359.97438 * 14 5 4 16 16 C 1.31600 * 121.56071 * 179.97438 * 15 14 5 17 17 C 1.40805 * 118.47972 * 0.02562 * 16 15 14 18 18 C 1.40186 * 122.02217 * 180.02562 * 17 16 15 19 19 C 1.36476 * 119.49317 * 179.97438 * 18 17 16 20 20 F 1.35107 * 119.54637 * 179.97438 * 19 18 17 21 21 C 1.39527 * 120.90902 * 359.97438 * 19 18 17 22 22 C 1.36204 * 121.04558 * 359.97420 * 21 19 18 23 23 C 1.40307 * 119.62175 * 0.04573 * 22 21 19 24 24 N 1.31921 * 118.68256 * 179.73322 * 14 5 4 25 25 H 1.09003 * 109.46801 * 59.99368 * 1 2 3 26 26 H 1.08999 * 109.47139 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47126 * 300.00128 * 1 2 3 28 28 H 1.09000 * 109.47049 * 240.00387 * 2 1 3 29 29 H 1.08993 * 109.46965 * 120.00559 * 2 1 3 30 30 H 1.09000 * 109.46880 * 60.00284 * 3 2 1 31 31 H 1.08993 * 109.47694 * 300.00112 * 3 2 1 32 32 H 1.08997 * 109.47825 * 300.00602 * 4 3 2 33 33 H 1.09000 * 109.46591 * 60.00644 * 4 3 2 34 34 H 0.96998 * 120.00477 * 179.97438 * 9 8 6 35 35 H 1.08004 * 120.76256 * 179.97438 * 16 15 14 36 36 H 1.08002 * 120.25152 * 359.97438 * 18 17 16 37 37 H 1.08002 * 119.47807 * 180.02562 * 21 19 18 38 38 H 1.07994 * 120.19374 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0584 2.8237 0.0013 6 6 4.3930 3.4311 1.1822 7 1 4.2217 4.4895 1.3126 8 6 4.9523 2.6864 2.2118 9 7 5.5503 1.5449 1.9482 10 14 4.8556 3.3056 3.9716 11 1 3.6156 2.7940 4.6089 12 1 6.0374 2.8244 4.7312 13 1 4.8368 4.7905 3.9736 14 6 4.1816 3.5144 -1.1911 15 7 3.8491 2.8980 -2.3244 16 6 3.9437 3.5014 -3.4901 17 6 4.4094 4.8298 -3.5227 18 6 4.5387 5.5429 -4.7226 19 6 4.9951 6.8288 -4.6942 20 9 5.1205 7.5170 -5.8501 21 6 5.3339 7.4425 -3.4879 22 6 5.2189 6.7776 -2.3048 23 6 4.7534 5.4540 -2.2956 24 7 4.6189 4.7586 -1.1598 25 1 -0.3633 0.5140 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 1.6767 1.9563 0.8900 31 1 1.6767 1.9564 -0.8899 32 1 3.9331 0.9287 0.8907 33 1 3.9336 0.9286 -0.8892 34 1 5.9414 1.0248 2.6675 35 1 3.6710 2.9892 -4.4010 36 1 4.2790 5.0783 -5.6624 37 1 5.6924 8.4613 -3.4922 38 1 5.4847 7.2661 -1.3791 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167132555.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:33 Heat of formation + Delta-G solvation = 12.240732 kcal Electronic energy + Delta-G solvation = -22394.424242 eV Core-core repulsion = 18957.943004 eV Total energy + Delta-G solvation = -3436.481238 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.129 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -49.67554 -41.85136 -39.20382 -37.41496 -35.66130 -34.62932 -33.75091 -32.01171 -30.55626 -29.43695 -27.05777 -25.47979 -24.83778 -23.36124 -22.93798 -21.91986 -20.03420 -19.17900 -18.67630 -18.02709 -17.09958 -16.54436 -16.51206 -16.41562 -16.05463 -15.81023 -15.34430 -15.18163 -14.88612 -14.71797 -14.19126 -13.98932 -13.85020 -13.63548 -13.37355 -13.18674 -12.94951 -12.62469 -12.31473 -12.20133 -12.07938 -11.98250 -11.85870 -11.83778 -11.63721 -11.44608 -10.99023 -10.24279 -9.76130 -9.66709 -8.67533 -8.29513 -5.96773 -0.44836 0.04343 1.13707 1.39847 1.41777 1.52291 2.07949 2.15471 2.62987 2.84196 3.40860 3.42620 3.56283 3.72824 3.82250 3.97088 4.09063 4.14861 4.23843 4.31584 4.42775 4.52527 4.82368 4.83573 4.85786 4.87877 4.99400 5.01958 5.07539 5.17200 5.17941 5.25596 5.32887 5.39519 5.40976 5.55076 5.61248 5.95071 6.04648 6.44795 6.50123 7.12395 7.37590 7.95370 8.56346 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.015110 B = 0.005044 C = 0.003999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1852.652481 B = 5550.004559 C = 7000.248294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.112 4.112 3 C -0.113 4.113 4 C 0.127 3.873 5 N -0.399 5.399 6 C -0.309 4.309 7 H 0.083 0.917 8 C -0.001 4.001 9 N -0.883 5.883 10 Si 0.991 3.009 11 H -0.264 1.264 12 H -0.276 1.276 13 H -0.268 1.268 14 C 0.487 3.513 15 N -0.573 5.573 16 C 0.230 3.770 17 C -0.247 4.247 18 C -0.060 4.060 19 C 0.024 3.976 20 F -0.146 7.146 21 C -0.082 4.082 22 C -0.128 4.128 23 C 0.189 3.811 24 N -0.618 5.618 25 H 0.053 0.947 26 H 0.071 0.929 27 H 0.049 0.951 28 H 0.066 0.934 29 H 0.058 0.942 30 H 0.042 0.958 31 H 0.047 0.953 32 H 0.093 0.907 33 H 0.052 0.948 34 H 0.277 0.723 35 H 0.214 0.786 36 H 0.171 0.829 37 H 0.163 0.837 38 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.102 2.118 -8.713 10.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.150 4.150 3 C -0.152 4.152 4 C 0.004 3.996 5 N -0.091 5.091 6 C -0.439 4.439 7 H 0.101 0.899 8 C -0.205 4.205 9 N -0.519 5.519 10 Si 0.813 3.187 11 H -0.189 1.189 12 H -0.201 1.201 13 H -0.193 1.193 14 C 0.134 3.866 15 N -0.292 5.292 16 C 0.044 3.956 17 C -0.256 4.256 18 C -0.081 4.081 19 C 0.003 3.997 20 F -0.125 7.125 21 C -0.104 4.104 22 C -0.149 4.149 23 C 0.055 3.945 24 N -0.348 5.348 25 H 0.072 0.928 26 H 0.090 0.910 27 H 0.068 0.932 28 H 0.085 0.915 29 H 0.077 0.923 30 H 0.061 0.939 31 H 0.065 0.935 32 H 0.111 0.889 33 H 0.071 0.929 34 H 0.087 0.913 35 H 0.230 0.770 36 H 0.188 0.812 37 H 0.180 0.820 38 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -5.100 1.242 -7.259 8.959 hybrid contribution 0.471 0.840 0.037 0.964 sum -4.629 2.083 -7.223 8.828 Atomic orbital electron populations 1.21711 0.94338 1.02350 1.01635 1.21380 0.96904 0.94704 1.02059 1.21791 0.95019 0.98094 1.00276 1.21594 0.93376 0.81814 1.02848 1.42611 1.53491 1.11891 1.01153 1.19661 1.39820 0.95690 0.88732 0.89912 1.26253 0.93404 0.96538 1.04290 1.70054 1.31567 1.15541 1.34729 0.84967 0.78354 0.78842 0.76498 1.18871 1.20118 1.19260 1.19942 0.92273 0.87964 0.86465 1.67729 1.23281 1.39314 0.98853 1.24007 0.86473 0.89400 0.95695 1.19089 1.13173 0.98688 0.94692 1.20904 0.96649 0.92443 0.98152 1.17188 1.08905 0.91862 0.81761 1.91459 1.94562 1.79481 1.47019 1.21035 0.97841 1.01435 0.90055 1.20508 1.03152 0.92154 0.99042 1.19276 0.92312 0.94733 0.88207 1.68374 1.28453 1.08402 1.29551 0.92756 0.90984 0.93156 0.91477 0.92287 0.93868 0.93470 0.88888 0.92935 0.91308 0.76980 0.81198 0.81974 0.84630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.53 9.91 71.98 0.71 -2.81 16 2 C -0.11 -3.42 5.93 30.59 0.18 -3.24 16 3 C -0.11 -4.41 5.51 30.59 0.17 -4.24 16 4 C 0.13 5.92 4.87 86.38 0.42 6.34 16 5 N -0.40 -20.95 2.64 -524.26 -1.39 -22.34 16 6 C -0.31 -16.98 8.95 84.04 0.75 -16.23 16 7 H 0.08 4.75 7.62 -2.91 -0.02 4.73 16 8 C 0.00 -0.05 4.93 84.88 0.42 0.37 16 9 N -0.88 -47.02 11.32 21.65 0.24 -46.77 16 10 Si 0.99 40.99 29.61 68.60 2.03 43.02 16 11 H -0.26 -10.38 7.11 99.48 0.71 -9.67 16 12 H -0.28 -11.06 7.11 99.48 0.71 -10.36 16 13 H -0.27 -11.09 7.11 99.48 0.71 -10.39 16 14 C 0.49 24.55 8.10 261.44 2.12 26.67 16 15 N -0.57 -24.66 9.11 -196.59 -1.79 -26.45 16 16 C 0.23 7.68 11.15 85.36 0.95 8.63 16 17 C -0.25 -8.50 5.74 -21.27 -0.12 -8.62 16 18 C -0.06 -1.59 9.77 22.33 0.22 -1.38 16 19 C 0.02 0.64 7.24 22.17 0.16 0.81 16 20 F -0.15 -3.73 17.24 44.97 0.78 -2.95 16 21 C -0.08 -2.24 9.92 22.11 0.22 -2.03 16 22 C -0.13 -4.41 10.01 22.30 0.22 -4.19 16 23 C 0.19 7.88 6.62 40.25 0.27 8.14 16 24 N -0.62 -31.10 9.32 -191.59 -1.79 -32.89 16 25 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 26 H 0.07 1.45 8.14 -2.39 -0.02 1.44 16 27 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 28 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 29 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 30 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 31 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 32 H 0.09 4.67 5.33 -2.39 -0.01 4.66 16 33 H 0.05 2.45 7.49 -2.39 -0.02 2.43 16 34 H 0.28 13.70 8.31 -92.71 -0.77 12.93 16 35 H 0.21 4.57 8.06 -2.91 -0.02 4.54 16 36 H 0.17 3.12 8.06 -2.91 -0.02 3.10 16 37 H 0.16 3.32 8.06 -2.91 -0.02 3.29 16 38 H 0.14 4.54 8.06 -2.91 -0.02 4.52 16 Total: -1.00 -64.94 327.19 5.85 -59.09 By element: Atomic # 1 Polarization: 19.98 SS G_CDS: 1.07 Total: 21.05 kcal Atomic # 6 Polarization: 1.53 SS G_CDS: 6.69 Total: 8.22 kcal Atomic # 7 Polarization: -123.72 SS G_CDS: -4.72 Total: -128.44 kcal Atomic # 9 Polarization: -3.73 SS G_CDS: 0.78 Total: -2.95 kcal Atomic # 14 Polarization: 40.99 SS G_CDS: 2.03 Total: 43.02 kcal Total: -64.94 5.85 -59.09 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167132555.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.335 kcal (2) G-P(sol) polarization free energy of solvation -64.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.094 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds