Wall clock time and date at job start Tue Mar 31 2020 06:31:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.35319 * 126.12443 * 2 1 4 4 C 1.39865 * 107.91805 * 180.14719 * 3 2 1 5 5 C 1.50704 * 125.89990 * 179.86798 * 4 3 2 6 6 N 1.46494 * 109.47300 * 94.71039 * 5 4 3 7 7 C 1.39896 * 119.99929 * 179.72381 * 6 5 4 8 8 C 1.39088 * 119.95994 * 0.02562 * 7 6 5 9 9 C 1.38624 * 120.46533 * 179.76299 * 8 7 6 10 10 C 1.37575 * 120.38514 * 0.50852 * 9 8 7 11 11 C 1.40787 * 119.90892 * 359.75072 * 10 9 8 12 12 C 1.41321 * 120.22589 * 179.97438 * 11 10 9 13 13 H 1.07999 * 119.99753 * 204.60077 * 12 11 10 14 14 C 1.39916 * 120.00200 * 24.60170 * 12 11 10 15 15 N 1.30855 * 120.00240 * 17.78461 * 14 12 11 16 16 Si 1.86804 * 119.99980 * 197.78348 * 14 12 11 17 17 H 1.48498 * 109.47004 * 90.00207 * 16 14 12 18 18 H 1.48502 * 109.46876 * 210.00154 * 16 14 12 19 19 H 1.48491 * 109.47040 * 329.99757 * 16 14 12 20 20 C 1.38586 * 119.95941 * 180.27968 * 7 6 5 21 21 F 1.35096 * 120.19422 * 359.97438 * 20 7 6 22 22 N 1.30833 * 108.20539 * 359.60026 * 4 3 2 23 23 N 1.34944 * 126.13070 * 179.70859 * 2 1 3 24 24 C 1.46505 * 126.03585 * 359.97438 * 23 2 1 25 25 H 1.09000 * 109.47273 * 270.28990 * 1 2 3 26 26 H 1.09004 * 109.47704 * 30.29205 * 1 2 3 27 27 H 1.09002 * 109.47163 * 150.29262 * 1 2 3 28 28 H 1.08001 * 126.04278 * 0.03108 * 3 2 1 29 29 H 1.08998 * 109.46752 * 334.71147 * 5 4 3 30 30 H 1.09004 * 109.47147 * 214.71690 * 5 4 3 31 31 H 0.97002 * 120.00472 * 0.02562 * 6 5 4 32 32 H 1.08003 * 119.76677 * 0.02562 * 8 7 6 33 33 H 1.08006 * 119.80204 * 180.25611 * 9 8 7 34 34 H 1.08001 * 120.04192 * 179.76343 * 10 9 8 35 35 H 0.96997 * 120.00369 * 179.97438 * 15 14 12 36 36 H 1.08998 * 109.47242 * 270.02583 * 24 23 2 37 37 H 1.09004 * 109.46749 * 30.02454 * 24 23 2 38 38 H 1.08997 * 109.46731 * 150.02196 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3047 1.0930 0.0000 4 6 3.6333 0.6560 -0.0034 5 6 4.8542 1.5396 -0.0074 6 7 5.3202 1.7350 1.3676 7 6 6.4508 2.5198 1.6182 8 6 7.1316 3.1146 0.5612 9 6 8.2502 3.8984 0.7978 10 6 8.7073 4.0891 2.0813 11 6 8.0337 3.4901 3.1627 12 6 8.4978 3.6812 4.4838 13 1 8.2674 2.9532 5.2476 14 6 9.2556 4.8134 4.8023 15 7 9.2482 5.8511 4.0052 16 14 10.2779 4.8437 6.3655 17 1 11.6376 4.3204 6.0779 18 1 10.3796 6.2390 6.8634 19 1 9.6292 3.9958 7.3976 20 6 6.8943 2.6993 2.9188 21 9 6.2375 2.1188 3.9468 22 7 3.6333 -0.6523 0.0033 23 7 2.3026 -1.0899 0.0055 24 6 1.8539 -2.4845 0.0132 25 1 -0.3634 0.0052 1.0276 26 1 -0.3635 0.8874 -0.5184 27 1 -0.3633 -0.8926 -0.5093 28 1 1.9740 2.1211 0.0005 29 1 4.6025 2.5050 -0.4464 30 1 5.6422 1.0679 -0.5946 31 1 4.8474 1.3166 2.1041 32 1 6.7837 2.9683 -0.4508 33 1 8.7682 4.3586 -0.0306 34 1 9.5817 4.6977 2.2590 35 1 9.7733 6.6362 4.2261 36 1 1.7426 -2.8248 1.0427 37 1 0.8954 -2.5606 -0.5003 38 1 2.5899 -3.1057 -0.4973 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167766339.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:17 Heat of formation + Delta-G solvation = 48.276921 kcal Electronic energy + Delta-G solvation = -21723.753377 eV Core-core repulsion = 18288.834785 eV Total energy + Delta-G solvation = -3434.918592 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.129 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -47.00325 -41.33641 -37.60710 -35.44836 -33.79899 -32.71766 -32.14217 -29.47670 -29.01522 -27.16750 -26.58954 -25.30548 -24.52122 -20.98138 -20.52563 -20.33271 -19.26392 -17.40185 -16.74650 -15.95958 -15.82981 -15.70437 -14.98408 -14.61406 -14.31148 -14.17743 -13.81890 -13.57764 -13.46250 -13.22254 -13.03031 -12.84213 -12.64633 -12.52624 -12.39932 -11.97329 -11.72701 -11.47552 -11.05963 -10.98805 -10.79553 -10.56272 -10.39319 -9.80972 -9.53194 -9.29684 -9.17997 -8.77994 -8.55535 -7.32394 -6.77308 -6.20314 -4.34638 1.74778 2.38375 2.64718 2.77558 3.07213 3.10589 3.14871 3.27559 3.95645 4.30872 4.40872 4.49409 4.64667 4.78433 4.84792 4.94051 5.14880 5.21156 5.38410 5.51452 5.64074 5.68043 5.86635 5.88750 6.05457 6.19393 6.28778 6.59061 6.73368 6.92215 6.93904 7.02034 7.22689 7.34178 7.66445 7.69313 7.80520 8.08085 8.17388 8.37360 8.53880 8.69685 8.84789 9.02120 10.18366 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.031092 B = 0.003183 C = 0.003045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.326452 B = 8794.987687 C = 9193.388875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.074 3.926 3 C -0.257 4.257 4 C 0.069 3.931 5 C 0.219 3.781 6 N -0.753 5.753 7 C 0.208 3.792 8 C -0.286 4.286 9 C -0.077 4.077 10 C -0.184 4.184 11 C 0.118 3.882 12 C -0.454 4.454 13 H 0.081 0.919 14 C 0.078 3.922 15 N -0.786 5.786 16 Si 0.911 3.089 17 H -0.267 1.267 18 H -0.277 1.277 19 H -0.261 1.261 20 C -0.096 4.096 21 F -0.168 7.168 22 N -0.280 5.280 23 N -0.376 5.376 24 C 0.101 3.899 25 H 0.079 0.921 26 H 0.085 0.915 27 H 0.068 0.932 28 H 0.149 0.851 29 H 0.073 0.927 30 H 0.066 0.934 31 H 0.394 0.606 32 H 0.096 0.904 33 H 0.093 0.907 34 H 0.122 0.878 35 H 0.281 0.719 36 H 0.074 0.926 37 H 0.084 0.916 38 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.698 -9.153 -7.916 18.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.053 4.053 3 C -0.286 4.286 4 C -0.098 4.098 5 C 0.093 3.907 6 N -0.388 5.388 7 C 0.108 3.892 8 C -0.309 4.309 9 C -0.096 4.096 10 C -0.204 4.204 11 C 0.115 3.885 12 C -0.483 4.483 13 H 0.099 0.901 14 C -0.141 4.141 15 N -0.411 5.411 16 Si 0.735 3.265 17 H -0.192 1.192 18 H -0.203 1.203 19 H -0.185 1.185 20 C -0.120 4.120 21 F -0.147 7.147 22 N -0.102 5.102 23 N -0.159 5.159 24 C -0.040 4.040 25 H 0.098 0.902 26 H 0.104 0.896 27 H 0.087 0.913 28 H 0.166 0.834 29 H 0.091 0.909 30 H 0.084 0.916 31 H 0.227 0.773 32 H 0.114 0.886 33 H 0.111 0.889 34 H 0.140 0.860 35 H 0.092 0.908 36 H 0.092 0.908 37 H 0.103 0.897 38 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -12.989 -10.122 -8.102 18.352 hybrid contribution -0.422 0.491 1.095 1.272 sum -13.411 -9.632 -7.007 17.936 Atomic orbital electron populations 1.20429 0.87368 1.03637 1.03326 1.21076 0.94617 0.87352 1.02232 1.21196 0.91613 0.99187 1.16636 1.22395 0.95866 0.91487 1.00035 1.19315 0.89842 0.95530 0.86043 1.44203 1.31405 1.57532 1.05623 1.17403 0.87128 0.92363 0.92324 1.19740 1.03595 1.12321 0.95268 1.20470 0.95634 0.97264 0.96274 1.21024 1.02614 1.06352 0.90457 1.17396 0.87906 0.88851 0.94389 1.19512 1.27902 1.05587 0.95286 0.90090 1.25904 0.95178 0.94429 0.98573 1.69855 1.31877 1.02964 1.36419 0.86261 0.80476 0.78248 0.81481 1.19160 1.20253 1.18534 1.17274 0.99616 1.13703 0.81447 1.91201 1.80774 1.84001 1.58753 1.77417 0.95920 1.12626 1.24261 1.48478 1.03946 1.05933 1.57546 1.21813 1.00797 0.78085 1.03328 0.90208 0.89593 0.91345 0.83365 0.90930 0.91600 0.77261 0.88587 0.88908 0.86029 0.90775 0.90787 0.89701 0.89286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.60 10.12 36.00 0.36 -0.24 16 2 C 0.07 0.85 6.93 -82.27 -0.57 0.28 16 3 C -0.26 -3.46 10.65 -40.01 -0.43 -3.89 16 4 C 0.07 1.08 6.59 -82.41 -0.54 0.53 16 5 C 0.22 3.67 5.47 -5.19 -0.03 3.64 16 6 N -0.75 -15.19 5.73 -59.79 -0.34 -15.53 16 7 C 0.21 4.92 6.65 -83.73 -0.56 4.36 16 8 C -0.29 -6.46 9.32 -39.12 -0.36 -6.83 16 9 C -0.08 -1.81 10.01 -39.68 -0.40 -2.21 16 10 C -0.18 -4.84 8.69 -38.86 -0.34 -5.17 16 11 C 0.12 3.30 5.58 -106.78 -0.60 2.70 16 12 C -0.45 -12.61 8.78 -37.78 -0.33 -12.94 16 13 H 0.08 2.24 7.73 -52.49 -0.41 1.83 16 14 C 0.08 1.99 5.14 -17.34 -0.09 1.90 16 15 N -0.79 -20.45 10.96 55.55 0.61 -19.84 16 16 Si 0.91 19.09 29.60 -169.99 -5.03 14.06 16 17 H -0.27 -5.48 7.11 56.52 0.40 -5.07 16 18 H -0.28 -5.62 7.11 56.52 0.40 -5.22 16 19 H -0.26 -5.49 7.11 56.52 0.40 -5.09 16 20 C -0.10 -2.56 7.31 -38.48 -0.28 -2.84 16 21 F -0.17 -4.45 16.08 2.25 0.04 -4.42 16 22 N -0.28 -4.49 12.58 33.67 0.42 -4.07 16 23 N -0.38 -4.68 4.01 -63.88 -0.26 -4.93 16 24 C 0.10 0.77 11.27 59.85 0.67 1.44 16 25 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 26 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.07 0.33 7.08 -51.93 -0.37 -0.03 16 28 H 0.15 1.76 8.06 -52.49 -0.42 1.34 16 29 H 0.07 1.13 7.96 -51.93 -0.41 0.72 16 30 H 0.07 1.11 7.93 -51.93 -0.41 0.70 16 31 H 0.39 8.04 7.94 -40.82 -0.32 7.72 16 32 H 0.10 1.90 6.70 -52.48 -0.35 1.55 16 33 H 0.09 1.91 8.06 -52.48 -0.42 1.48 16 34 H 0.12 3.25 6.16 -52.49 -0.32 2.93 16 35 H 0.28 6.60 8.30 -40.82 -0.34 6.26 16 36 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.08 0.39 7.05 -51.93 -0.37 0.02 16 38 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 328.31 15.07 4.95 4.95 Total: -1.00 -31.75 328.31 -7.73 -39.48 By element: Atomic # 1 Polarization: 14.20 SS G_CDS: -4.63 Total: 9.56 kcal Atomic # 6 Polarization: -15.78 SS G_CDS: -3.48 Total: -19.26 kcal Atomic # 7 Polarization: -44.81 SS G_CDS: 0.43 Total: -44.38 kcal Atomic # 9 Polarization: -4.45 SS G_CDS: 0.04 Total: -4.42 kcal Atomic # 14 Polarization: 19.09 SS G_CDS: -5.03 Total: 14.06 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -31.75 -7.73 -39.48 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167766339.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.761 kcal (2) G-P(sol) polarization free energy of solvation -31.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.484 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds