Wall clock time and date at job start Tue Mar 31 2020 06:31:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.35319 * 126.12443 * 2 1 4 4 C 1.39865 * 107.91805 * 180.14719 * 3 2 1 5 5 C 1.50704 * 125.89990 * 179.86798 * 4 3 2 6 6 N 1.46494 * 109.47300 * 94.71039 * 5 4 3 7 7 C 1.39896 * 119.99929 * 179.72381 * 6 5 4 8 8 C 1.39088 * 119.95994 * 0.02562 * 7 6 5 9 9 C 1.38624 * 120.46533 * 179.76299 * 8 7 6 10 10 C 1.37575 * 120.38514 * 0.50852 * 9 8 7 11 11 C 1.40787 * 119.90892 * 359.75072 * 10 9 8 12 12 C 1.41321 * 120.22589 * 179.97438 * 11 10 9 13 13 H 1.07999 * 119.99753 * 204.60077 * 12 11 10 14 14 C 1.39916 * 120.00200 * 24.60170 * 12 11 10 15 15 N 1.30855 * 120.00240 * 17.78461 * 14 12 11 16 16 Si 1.86804 * 119.99980 * 197.78348 * 14 12 11 17 17 H 1.48498 * 109.47004 * 90.00207 * 16 14 12 18 18 H 1.48502 * 109.46876 * 210.00154 * 16 14 12 19 19 H 1.48491 * 109.47040 * 329.99757 * 16 14 12 20 20 C 1.38586 * 119.95941 * 180.27968 * 7 6 5 21 21 F 1.35096 * 120.19422 * 359.97438 * 20 7 6 22 22 N 1.30833 * 108.20539 * 359.60026 * 4 3 2 23 23 N 1.34944 * 126.13070 * 179.70859 * 2 1 3 24 24 C 1.46505 * 126.03585 * 359.97438 * 23 2 1 25 25 H 1.09000 * 109.47273 * 270.28990 * 1 2 3 26 26 H 1.09004 * 109.47704 * 30.29205 * 1 2 3 27 27 H 1.09002 * 109.47163 * 150.29262 * 1 2 3 28 28 H 1.08001 * 126.04278 * 0.03108 * 3 2 1 29 29 H 1.08998 * 109.46752 * 334.71147 * 5 4 3 30 30 H 1.09004 * 109.47147 * 214.71690 * 5 4 3 31 31 H 0.97002 * 120.00472 * 0.02562 * 6 5 4 32 32 H 1.08003 * 119.76677 * 0.02562 * 8 7 6 33 33 H 1.08006 * 119.80204 * 180.25611 * 9 8 7 34 34 H 1.08001 * 120.04192 * 179.76343 * 10 9 8 35 35 H 0.96997 * 120.00369 * 179.97438 * 15 14 12 36 36 H 1.08998 * 109.47242 * 270.02583 * 24 23 2 37 37 H 1.09004 * 109.46749 * 30.02454 * 24 23 2 38 38 H 1.08997 * 109.46731 * 150.02196 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3047 1.0930 0.0000 4 6 3.6333 0.6560 -0.0034 5 6 4.8542 1.5396 -0.0074 6 7 5.3202 1.7350 1.3676 7 6 6.4508 2.5198 1.6182 8 6 7.1316 3.1146 0.5612 9 6 8.2502 3.8984 0.7978 10 6 8.7073 4.0891 2.0813 11 6 8.0337 3.4901 3.1627 12 6 8.4978 3.6812 4.4838 13 1 8.2674 2.9532 5.2476 14 6 9.2556 4.8134 4.8023 15 7 9.2482 5.8511 4.0052 16 14 10.2779 4.8437 6.3655 17 1 11.6376 4.3204 6.0779 18 1 10.3796 6.2390 6.8634 19 1 9.6292 3.9958 7.3976 20 6 6.8943 2.6993 2.9188 21 9 6.2375 2.1188 3.9468 22 7 3.6333 -0.6523 0.0033 23 7 2.3026 -1.0899 0.0055 24 6 1.8539 -2.4845 0.0132 25 1 -0.3634 0.0052 1.0276 26 1 -0.3635 0.8874 -0.5184 27 1 -0.3633 -0.8926 -0.5093 28 1 1.9740 2.1211 0.0005 29 1 4.6025 2.5050 -0.4464 30 1 5.6422 1.0679 -0.5946 31 1 4.8474 1.3166 2.1041 32 1 6.7837 2.9683 -0.4508 33 1 8.7682 4.3586 -0.0306 34 1 9.5817 4.6977 2.2590 35 1 9.7733 6.6362 4.2261 36 1 1.7426 -2.8248 1.0427 37 1 0.8954 -2.5606 -0.5003 38 1 2.5899 -3.1057 -0.4973 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167766339.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:17 Heat of formation + Delta-G solvation = 28.864236 kcal Electronic energy + Delta-G solvation = -21724.595174 eV Core-core repulsion = 18288.834785 eV Total energy + Delta-G solvation = -3435.760389 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.129 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -49.06142 -42.31083 -39.44730 -37.07438 -35.34743 -34.12476 -32.91641 -31.43095 -30.50728 -28.02426 -27.83240 -27.23756 -25.78530 -22.75253 -22.38934 -21.39476 -20.37326 -19.29437 -17.99938 -17.71457 -17.30476 -16.97632 -16.66748 -16.22502 -16.00661 -15.41765 -15.15756 -15.01024 -14.89652 -14.59486 -14.18298 -13.97069 -13.71807 -13.64367 -13.38980 -13.31822 -13.13154 -13.02628 -12.81253 -12.67632 -12.53101 -12.14405 -11.76949 -11.59328 -11.41539 -11.14830 -10.58076 -10.20129 -9.51564 -9.30895 -8.68881 -8.02969 -6.40052 0.77623 0.89499 1.15879 1.37663 1.51139 1.53293 1.54429 1.58393 2.20954 2.70658 2.86021 3.44503 3.64112 3.69008 3.99583 4.09749 4.25092 4.35109 4.43502 4.48617 4.53320 4.60865 4.75320 4.77348 4.84470 4.86403 5.03937 5.06983 5.09791 5.23164 5.28419 5.45575 5.54965 5.74751 5.90466 6.11058 6.12042 6.20116 6.46813 6.66524 6.72105 6.78558 6.84954 7.06611 8.29114 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.031092 B = 0.003183 C = 0.003045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.326452 B = 8794.987687 C = 9193.388875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.086 3.914 3 C -0.283 4.283 4 C 0.050 3.950 5 C 0.220 3.780 6 N -0.747 5.747 7 C 0.213 3.787 8 C -0.281 4.281 9 C -0.069 4.069 10 C -0.211 4.211 11 C 0.091 3.909 12 C -0.496 4.496 13 H 0.065 0.935 14 C 0.041 3.959 15 N -0.811 5.811 16 Si 0.985 3.015 17 H -0.257 1.257 18 H -0.260 1.260 19 H -0.266 1.266 20 C -0.136 4.136 21 F -0.176 7.176 22 N -0.323 5.323 23 N -0.375 5.375 24 C 0.089 3.911 25 H 0.091 0.909 26 H 0.098 0.902 27 H 0.093 0.907 28 H 0.158 0.842 29 H 0.087 0.913 30 H 0.065 0.935 31 H 0.390 0.610 32 H 0.131 0.869 33 H 0.127 0.873 34 H 0.111 0.889 35 H 0.293 0.707 36 H 0.083 0.917 37 H 0.122 0.878 38 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.225 -9.579 -9.001 20.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.042 4.042 3 C -0.312 4.312 4 C -0.115 4.115 5 C 0.095 3.905 6 N -0.379 5.379 7 C 0.111 3.889 8 C -0.304 4.304 9 C -0.088 4.088 10 C -0.231 4.231 11 C 0.088 3.912 12 C -0.525 4.525 13 H 0.083 0.917 14 C -0.176 4.176 15 N -0.436 5.436 16 Si 0.805 3.195 17 H -0.181 1.181 18 H -0.184 1.184 19 H -0.190 1.190 20 C -0.160 4.160 21 F -0.156 7.156 22 N -0.147 5.147 23 N -0.158 5.158 24 C -0.050 4.050 25 H 0.109 0.891 26 H 0.117 0.883 27 H 0.112 0.888 28 H 0.176 0.824 29 H 0.105 0.895 30 H 0.083 0.917 31 H 0.223 0.777 32 H 0.148 0.852 33 H 0.144 0.856 34 H 0.129 0.871 35 H 0.103 0.897 36 H 0.102 0.898 37 H 0.140 0.860 38 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -14.543 -10.571 -9.225 20.208 hybrid contribution -0.117 0.514 1.305 1.407 sum -14.660 -10.057 -7.920 19.462 Atomic orbital electron populations 1.20615 0.83709 1.05592 1.04571 1.21773 0.96650 0.86335 0.99478 1.21443 0.91088 1.00534 1.18139 1.22253 0.96206 0.91583 1.01422 1.19409 0.90582 0.96691 0.83810 1.44342 1.30111 1.56249 1.07237 1.17546 0.87794 0.92000 0.91516 1.20120 1.02804 1.11020 0.96485 1.20835 0.95516 0.96316 0.96128 1.21001 1.03030 1.07655 0.91450 1.17762 0.88647 0.89673 0.95154 1.19661 1.30694 1.06799 0.95374 0.91673 1.26722 0.95488 0.93271 1.02109 1.69872 1.32171 1.03463 1.38084 0.85171 0.78618 0.78890 0.76815 1.18124 1.18435 1.18976 1.17623 1.00498 1.15320 0.82595 1.91154 1.80896 1.84214 1.59345 1.77299 0.98629 1.12936 1.25848 1.48859 1.02926 1.07810 1.56249 1.22228 1.02454 0.75761 1.04587 0.89092 0.88282 0.88807 0.82435 0.89466 0.91712 0.77679 0.85168 0.85551 0.87148 0.89657 0.89813 0.85995 0.89272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.85 10.12 71.23 0.72 -0.13 16 2 C 0.09 1.77 6.93 41.40 0.29 2.05 16 3 C -0.28 -7.28 10.65 21.99 0.23 -7.04 16 4 C 0.05 1.55 6.59 43.10 0.28 1.84 16 5 C 0.22 7.23 5.47 85.64 0.47 7.69 16 6 N -0.75 -30.26 5.73 -343.06 -1.97 -32.23 16 7 C 0.21 10.19 6.65 38.14 0.25 10.44 16 8 C -0.28 -12.38 9.32 22.57 0.21 -12.17 16 9 C -0.07 -3.19 10.01 22.21 0.22 -2.97 16 10 C -0.21 -11.33 8.69 22.74 0.20 -11.14 16 11 C 0.09 5.30 5.58 -21.27 -0.12 5.18 16 12 C -0.50 -28.89 8.78 23.44 0.21 -28.69 16 13 H 0.07 3.83 7.73 -2.91 -0.02 3.81 16 14 C 0.04 2.13 5.14 85.25 0.44 2.56 16 15 N -0.81 -42.92 10.96 21.82 0.24 -42.68 16 16 Si 0.99 39.67 29.60 68.60 2.03 41.70 16 17 H -0.26 -9.88 7.11 99.48 0.71 -9.17 16 18 H -0.26 -9.68 7.11 99.48 0.71 -8.98 16 19 H -0.27 -10.76 7.11 99.48 0.71 -10.05 16 20 C -0.14 -7.53 7.31 22.99 0.17 -7.36 16 21 F -0.18 -9.84 16.08 44.97 0.72 -9.11 16 22 N -0.32 -10.24 12.58 -47.39 -0.60 -10.84 16 23 N -0.37 -8.67 4.01 -356.02 -1.43 -10.10 16 24 C 0.09 1.13 11.27 127.77 1.44 2.57 16 25 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 26 H 0.10 0.76 8.14 -2.38 -0.02 0.74 16 27 H 0.09 0.47 7.08 -2.39 -0.02 0.45 16 28 H 0.16 3.56 8.06 -2.91 -0.02 3.53 16 29 H 0.09 2.59 7.96 -2.39 -0.02 2.57 16 30 H 0.06 2.13 7.93 -2.39 -0.02 2.11 16 31 H 0.39 16.30 7.94 -92.71 -0.74 15.56 16 32 H 0.13 4.80 6.70 -2.91 -0.02 4.78 16 33 H 0.13 4.90 8.06 -2.91 -0.02 4.88 16 34 H 0.11 6.08 6.16 -2.91 -0.02 6.06 16 35 H 0.29 13.76 8.30 -92.71 -0.77 12.99 16 36 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 37 H 0.12 0.62 7.05 -2.38 -0.02 0.60 16 38 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 Total: -1.00 -72.13 328.31 4.37 -67.76 By element: Atomic # 1 Polarization: 32.29 SS G_CDS: 0.36 Total: 32.64 kcal Atomic # 6 Polarization: -42.16 SS G_CDS: 5.01 Total: -37.15 kcal Atomic # 7 Polarization: -92.09 SS G_CDS: -3.75 Total: -95.84 kcal Atomic # 9 Polarization: -9.84 SS G_CDS: 0.72 Total: -9.11 kcal Atomic # 14 Polarization: 39.67 SS G_CDS: 2.03 Total: 41.70 kcal Total: -72.13 4.37 -67.76 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167766339.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.624 kcal (2) G-P(sol) polarization free energy of solvation -72.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.760 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds