Wall clock time and date at job start Tue Mar 31 2020 06:31:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35315 * 126.12754 * 2 1 4 4 C 1.39870 * 107.91994 * 180.14502 * 3 2 1 5 5 C 1.50705 * 125.89651 * 179.86645 * 4 3 2 6 6 N 1.46505 * 109.47244 * 94.71541 * 5 4 3 7 7 C 1.39673 * 119.99803 * 180.02562 * 6 5 4 8 8 C 1.39288 * 119.94174 * 359.97438 * 7 6 5 9 9 C 1.38701 * 120.40465 * 180.02562 * 8 7 6 10 10 F 1.35101 * 119.86769 * 180.02562 * 9 8 7 11 11 C 1.37918 * 120.27155 * 0.02562 * 9 8 7 12 12 C 1.40715 * 119.86863 * 359.97438 * 11 9 8 13 13 C 1.41405 * 120.19664 * 180.02562 * 12 11 9 14 14 H 1.08005 * 120.00081 * 24.34386 * 13 12 11 15 15 C 1.39931 * 120.00110 * 204.35695 * 13 12 11 16 16 N 1.30834 * 119.99870 * 17.72744 * 15 13 12 17 17 Si 1.86795 * 120.00001 * 197.73399 * 15 13 12 18 18 H 1.48489 * 109.47410 * 59.99377 * 17 15 13 19 19 H 1.48500 * 109.47095 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.46925 * 299.98985 * 17 15 13 21 21 C 1.38296 * 119.93759 * 179.72417 * 7 6 5 22 22 N 1.30835 * 108.20398 * 359.59657 * 4 3 2 23 23 N 1.34947 * 126.12857 * 179.70350 * 2 1 3 24 24 C 1.46507 * 126.03828 * 359.97438 * 23 2 1 25 25 H 1.09003 * 109.47446 * 270.28963 * 1 2 3 26 26 H 1.08997 * 109.47270 * 30.29573 * 1 2 3 27 27 H 1.09003 * 109.46955 * 150.29430 * 1 2 3 28 28 H 1.08001 * 126.03932 * 0.02577 * 3 2 1 29 29 H 1.09003 * 109.46854 * 214.70837 * 5 4 3 30 30 H 1.09001 * 109.46902 * 334.71305 * 5 4 3 31 31 H 0.96997 * 119.99725 * 359.97438 * 6 5 4 32 32 H 1.08002 * 119.80074 * 359.97438 * 8 7 6 33 33 H 1.07992 * 120.06935 * 179.97438 * 11 9 8 34 34 H 0.96995 * 120.00123 * 180.02562 * 16 15 13 35 35 H 1.08006 * 120.13741 * 359.97438 * 21 7 6 36 36 H 1.08995 * 109.47503 * 270.02712 * 24 23 2 37 37 H 1.09000 * 109.46606 * 30.02421 * 24 23 2 38 38 H 1.08996 * 109.46937 * 150.02354 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3048 1.0929 0.0000 4 6 3.6335 0.6559 -0.0034 5 6 4.8543 1.5395 -0.0074 6 7 5.3203 1.7349 1.3678 7 6 6.4454 2.5237 1.6184 8 6 7.1237 3.1235 0.5600 9 6 8.2424 3.9082 0.7979 10 9 8.8917 4.4853 -0.2368 11 6 8.6946 4.1019 2.0863 12 6 8.0181 3.5013 3.1642 13 6 8.4754 3.6957 4.4880 14 1 9.0592 4.5702 4.7348 15 6 8.1717 2.7549 5.4784 16 7 7.7810 1.5527 5.1408 17 14 8.3240 3.2154 7.2822 18 1 7.4196 4.3548 7.5803 19 1 7.9470 2.0515 8.1238 20 1 9.7261 3.6062 7.5766 21 6 6.8809 2.7119 2.9175 22 7 3.6334 -0.6524 0.0034 23 7 2.3026 -1.0900 0.0056 24 6 1.8540 -2.4846 0.0134 25 1 -0.3634 0.0052 1.0277 26 1 -0.3634 0.8873 -0.5184 27 1 -0.3633 -0.8926 -0.5093 28 1 1.9740 2.1211 0.0004 29 1 5.6423 1.0677 -0.5944 30 1 4.6026 2.5049 -0.4464 31 1 4.8470 1.3170 2.1041 32 1 6.7770 2.9760 -0.4522 33 1 9.5662 4.7132 2.2677 34 1 7.5701 0.9007 5.8273 35 1 6.3525 2.2505 3.7387 36 1 1.7426 -2.8248 1.0429 37 1 0.8955 -2.5607 -0.5001 38 1 2.5899 -3.1058 -0.4970 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167769647.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:21 Heat of formation + Delta-G solvation = 46.300519 kcal Electronic energy + Delta-G solvation = -21626.191336 eV Core-core repulsion = 18191.187041 eV Total energy + Delta-G solvation = -3435.004295 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.129 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -47.63187 -41.31161 -37.76281 -35.32002 -33.69812 -32.75500 -32.12256 -29.40208 -28.96565 -27.14925 -26.64131 -25.45200 -24.43014 -21.20398 -20.45414 -20.26969 -19.29731 -17.55298 -16.73692 -15.98148 -15.80792 -15.14385 -15.00584 -14.52832 -14.34019 -14.28106 -14.13346 -13.81195 -13.72298 -13.46158 -13.11154 -12.88780 -12.68845 -12.45870 -12.43673 -11.92837 -11.80199 -11.50306 -11.08551 -10.98184 -10.60368 -10.51071 -10.39563 -10.02045 -9.68385 -9.28850 -9.16398 -8.64779 -8.53365 -7.30640 -6.79615 -6.24563 -4.41046 1.77504 2.41025 2.67691 2.80374 3.02765 3.07803 3.10898 3.26938 3.93870 4.33853 4.43290 4.52351 4.63162 4.80043 4.87333 4.96610 5.17309 5.22474 5.40720 5.52540 5.66171 5.69441 5.81486 5.90083 5.93324 6.22519 6.42035 6.62227 6.70356 6.84888 6.94597 7.05550 7.22885 7.34977 7.59389 7.72418 7.77125 8.00904 8.08843 8.37525 8.63485 8.74526 8.91583 8.99730 10.18625 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.014454 B = 0.003948 C = 0.003281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1936.686914 B = 7090.915492 C = 8532.736983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.073 3.927 3 C -0.257 4.257 4 C 0.069 3.931 5 C 0.216 3.784 6 N -0.749 5.749 7 C 0.243 3.757 8 C -0.334 4.334 9 C 0.143 3.857 10 F -0.169 7.169 11 C -0.290 4.290 12 C 0.159 3.841 13 C -0.458 4.458 14 H 0.080 0.920 15 C 0.078 3.922 16 N -0.785 5.785 17 Si 0.908 3.092 18 H -0.263 1.263 19 H -0.279 1.279 20 H -0.265 1.265 21 C -0.239 4.239 22 N -0.278 5.278 23 N -0.376 5.376 24 C 0.101 3.899 25 H 0.079 0.921 26 H 0.085 0.915 27 H 0.067 0.933 28 H 0.148 0.852 29 H 0.065 0.935 30 H 0.072 0.928 31 H 0.394 0.606 32 H 0.100 0.900 33 H 0.101 0.899 34 H 0.280 0.720 35 H 0.122 0.878 36 H 0.074 0.926 37 H 0.084 0.916 38 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.044 -6.083 -6.512 17.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.053 4.053 3 C -0.287 4.287 4 C -0.097 4.097 5 C 0.089 3.911 6 N -0.383 5.383 7 C 0.143 3.857 8 C -0.357 4.357 9 C 0.123 3.877 10 F -0.148 7.148 11 C -0.311 4.311 12 C 0.155 3.845 13 C -0.488 4.488 14 H 0.098 0.902 15 C -0.140 4.140 16 N -0.409 5.409 17 Si 0.733 3.267 18 H -0.188 1.188 19 H -0.204 1.204 20 H -0.189 1.189 21 C -0.263 4.263 22 N -0.101 5.101 23 N -0.159 5.159 24 C -0.040 4.040 25 H 0.098 0.902 26 H 0.104 0.896 27 H 0.086 0.914 28 H 0.166 0.834 29 H 0.083 0.917 30 H 0.090 0.910 31 H 0.228 0.772 32 H 0.118 0.882 33 H 0.119 0.881 34 H 0.091 0.909 35 H 0.139 0.861 36 H 0.092 0.908 37 H 0.103 0.897 38 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -14.431 -7.511 -6.665 17.581 hybrid contribution -0.516 0.554 0.888 1.167 sum -14.947 -6.957 -5.777 17.469 Atomic orbital electron populations 1.20425 0.87410 1.03612 1.03293 1.21073 0.94594 0.87381 1.02294 1.21184 0.91617 0.99133 1.16754 1.22397 0.95827 0.91483 0.99999 1.19341 0.89859 0.95448 0.86439 1.44279 1.31604 1.57084 1.05338 1.17250 0.85556 0.89494 0.93379 1.19707 1.03914 1.14829 0.97263 1.17216 0.92027 0.95201 0.83235 1.91322 1.81176 1.83372 1.58903 1.20825 1.05292 1.14290 0.90678 1.17041 0.88249 0.87361 0.91817 1.19532 1.29950 1.06638 0.92655 0.90203 1.25915 0.92568 0.93938 1.01619 1.69857 1.32065 1.02968 1.36052 0.86369 0.79898 0.79086 0.81389 1.18755 1.20402 1.18945 1.20745 1.01365 1.11164 0.93044 1.77442 0.95842 1.12651 1.24155 1.48486 1.03964 1.05921 1.57532 1.21810 1.00774 0.78110 1.03330 0.90231 0.89629 0.91365 0.83409 0.91686 0.91040 0.77188 0.88217 0.88102 0.90864 0.86068 0.90779 0.89737 0.89282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.61 10.12 36.01 0.36 -0.24 16 2 C 0.07 0.84 6.93 -82.26 -0.57 0.27 16 3 C -0.26 -3.46 10.65 -40.01 -0.43 -3.89 16 4 C 0.07 1.10 6.59 -82.40 -0.54 0.56 16 5 C 0.22 3.66 5.46 -5.19 -0.03 3.64 16 6 N -0.75 -14.91 5.72 -59.86 -0.34 -15.25 16 7 C 0.24 5.73 6.64 -83.87 -0.56 5.17 16 8 C -0.33 -7.84 9.30 -39.02 -0.36 -8.21 16 9 C 0.14 3.53 7.28 -39.53 -0.29 3.24 16 10 F -0.17 -3.93 17.26 2.25 0.04 -3.89 16 11 C -0.29 -7.50 9.76 -38.76 -0.38 -7.88 16 12 C 0.16 4.30 5.57 -106.86 -0.60 3.71 16 13 C -0.46 -12.20 9.05 -37.74 -0.34 -12.54 16 14 H 0.08 2.03 7.91 -52.48 -0.41 1.62 16 15 C 0.08 1.96 5.14 -17.34 -0.09 1.87 16 16 N -0.78 -20.24 10.96 55.55 0.61 -19.63 16 17 Si 0.91 18.58 29.59 -169.99 -5.03 13.55 16 18 H -0.26 -5.33 7.11 56.52 0.40 -4.93 16 19 H -0.28 -5.56 7.11 56.52 0.40 -5.16 16 20 H -0.26 -5.36 7.11 56.52 0.40 -4.96 16 21 C -0.24 -6.21 8.53 -38.66 -0.33 -6.54 16 22 N -0.28 -4.55 12.58 33.67 0.42 -4.13 16 23 N -0.38 -4.75 4.01 -63.88 -0.26 -5.01 16 24 C 0.10 0.79 11.27 59.85 0.67 1.47 16 25 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.07 0.34 7.08 -51.93 -0.37 -0.03 16 28 H 0.15 1.74 8.06 -52.49 -0.42 1.31 16 29 H 0.07 1.15 7.94 -51.93 -0.41 0.73 16 30 H 0.07 1.13 7.94 -51.93 -0.41 0.72 16 31 H 0.39 7.76 8.47 -40.82 -0.35 7.42 16 32 H 0.10 2.13 6.70 -52.49 -0.35 1.78 16 33 H 0.10 2.50 8.06 -52.49 -0.42 2.07 16 34 H 0.28 6.61 8.30 -40.82 -0.34 6.27 16 35 H 0.12 3.23 6.16 -52.48 -0.32 2.91 16 36 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.08 0.41 7.05 -51.93 -0.37 0.04 16 38 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 329.97 15.07 4.97 4.97 Total: -1.00 -30.77 329.97 -7.72 -38.49 By element: Atomic # 1 Polarization: 14.94 SS G_CDS: -4.67 Total: 10.28 kcal Atomic # 6 Polarization: -15.90 SS G_CDS: -3.47 Total: -19.37 kcal Atomic # 7 Polarization: -44.45 SS G_CDS: 0.43 Total: -44.02 kcal Atomic # 9 Polarization: -3.93 SS G_CDS: 0.04 Total: -3.89 kcal Atomic # 14 Polarization: 18.58 SS G_CDS: -5.03 Total: 13.55 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -30.77 -7.72 -38.49 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167769647.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.793 kcal (2) G-P(sol) polarization free energy of solvation -30.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.493 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds