Wall clock time and date at job start Tue Mar 31 2020 06:31:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35315 * 126.12754 * 2 1 4 4 C 1.39870 * 107.91994 * 180.14502 * 3 2 1 5 5 C 1.50705 * 125.89651 * 179.86645 * 4 3 2 6 6 N 1.46505 * 109.47244 * 94.71541 * 5 4 3 7 7 C 1.39673 * 119.99803 * 180.02562 * 6 5 4 8 8 C 1.39288 * 119.94174 * 359.97438 * 7 6 5 9 9 C 1.38701 * 120.40465 * 180.02562 * 8 7 6 10 10 F 1.35101 * 119.86769 * 180.02562 * 9 8 7 11 11 C 1.37918 * 120.27155 * 0.02562 * 9 8 7 12 12 C 1.40715 * 119.86863 * 359.97438 * 11 9 8 13 13 C 1.41405 * 120.19664 * 180.02562 * 12 11 9 14 14 H 1.08005 * 120.00081 * 24.34386 * 13 12 11 15 15 C 1.39931 * 120.00110 * 204.35695 * 13 12 11 16 16 N 1.30834 * 119.99870 * 17.72744 * 15 13 12 17 17 Si 1.86795 * 120.00001 * 197.73399 * 15 13 12 18 18 H 1.48489 * 109.47410 * 59.99377 * 17 15 13 19 19 H 1.48500 * 109.47095 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.46925 * 299.98985 * 17 15 13 21 21 C 1.38296 * 119.93759 * 179.72417 * 7 6 5 22 22 N 1.30835 * 108.20398 * 359.59657 * 4 3 2 23 23 N 1.34947 * 126.12857 * 179.70350 * 2 1 3 24 24 C 1.46507 * 126.03828 * 359.97438 * 23 2 1 25 25 H 1.09003 * 109.47446 * 270.28963 * 1 2 3 26 26 H 1.08997 * 109.47270 * 30.29573 * 1 2 3 27 27 H 1.09003 * 109.46955 * 150.29430 * 1 2 3 28 28 H 1.08001 * 126.03932 * 0.02577 * 3 2 1 29 29 H 1.09003 * 109.46854 * 214.70837 * 5 4 3 30 30 H 1.09001 * 109.46902 * 334.71305 * 5 4 3 31 31 H 0.96997 * 119.99725 * 359.97438 * 6 5 4 32 32 H 1.08002 * 119.80074 * 359.97438 * 8 7 6 33 33 H 1.07992 * 120.06935 * 179.97438 * 11 9 8 34 34 H 0.96995 * 120.00123 * 180.02562 * 16 15 13 35 35 H 1.08006 * 120.13741 * 359.97438 * 21 7 6 36 36 H 1.08995 * 109.47503 * 270.02712 * 24 23 2 37 37 H 1.09000 * 109.46606 * 30.02421 * 24 23 2 38 38 H 1.08996 * 109.46937 * 150.02354 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3048 1.0929 0.0000 4 6 3.6335 0.6559 -0.0034 5 6 4.8543 1.5395 -0.0074 6 7 5.3203 1.7349 1.3678 7 6 6.4454 2.5237 1.6184 8 6 7.1237 3.1235 0.5600 9 6 8.2424 3.9082 0.7979 10 9 8.8917 4.4853 -0.2368 11 6 8.6946 4.1019 2.0863 12 6 8.0181 3.5013 3.1642 13 6 8.4754 3.6957 4.4880 14 1 9.0592 4.5702 4.7348 15 6 8.1717 2.7549 5.4784 16 7 7.7810 1.5527 5.1408 17 14 8.3240 3.2154 7.2822 18 1 7.4196 4.3548 7.5803 19 1 7.9470 2.0515 8.1238 20 1 9.7261 3.6062 7.5766 21 6 6.8809 2.7119 2.9175 22 7 3.6334 -0.6524 0.0034 23 7 2.3026 -1.0900 0.0056 24 6 1.8540 -2.4846 0.0134 25 1 -0.3634 0.0052 1.0277 26 1 -0.3634 0.8873 -0.5184 27 1 -0.3633 -0.8926 -0.5093 28 1 1.9740 2.1211 0.0004 29 1 5.6423 1.0677 -0.5944 30 1 4.6026 2.5049 -0.4464 31 1 4.8470 1.3170 2.1041 32 1 6.7770 2.9760 -0.4522 33 1 9.5662 4.7132 2.2677 34 1 7.5701 0.9007 5.8273 35 1 6.3525 2.2505 3.7387 36 1 1.7426 -2.8248 1.0429 37 1 0.8955 -2.5607 -0.5001 38 1 2.5899 -3.1058 -0.4970 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167769647.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:20 Heat of formation + Delta-G solvation = 28.165445 kcal Electronic energy + Delta-G solvation = -21626.977731 eV Core-core repulsion = 18191.187041 eV Total energy + Delta-G solvation = -3435.790691 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.129 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -49.56074 -42.30085 -39.61737 -36.92174 -35.28734 -34.17246 -32.90557 -31.25422 -30.59544 -28.04471 -27.84859 -27.36355 -25.70788 -23.07704 -22.20361 -21.40398 -20.38920 -19.44871 -18.00079 -17.44869 -17.06146 -16.83153 -16.59649 -16.32642 -16.23283 -15.83059 -15.40647 -15.23967 -14.95111 -14.63279 -14.19009 -13.97310 -13.75863 -13.62315 -13.35447 -13.31777 -13.14430 -12.82552 -12.78124 -12.73029 -12.40986 -12.16843 -11.97045 -11.58982 -11.53847 -11.12369 -10.48883 -10.18917 -9.50286 -9.28552 -8.68681 -8.07507 -6.42769 0.79353 0.91530 1.08809 1.40805 1.52086 1.55485 1.57257 1.59897 2.22248 2.70478 2.88857 3.45457 3.66472 3.69837 3.87272 4.01025 4.25510 4.35593 4.44074 4.48839 4.57071 4.61444 4.73533 4.76388 4.78563 4.85275 4.93311 5.07852 5.11867 5.24109 5.25565 5.45372 5.55604 5.68080 5.82224 6.08579 6.11233 6.13443 6.43716 6.68234 6.80923 6.86646 6.93899 7.07832 8.31530 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.014454 B = 0.003948 C = 0.003281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1936.686914 B = 7090.915492 C = 8532.736983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.086 3.914 3 C -0.281 4.281 4 C 0.052 3.948 5 C 0.218 3.782 6 N -0.741 5.741 7 C 0.251 3.749 8 C -0.335 4.335 9 C 0.141 3.859 10 F -0.161 7.161 11 C -0.314 4.314 12 C 0.135 3.865 13 C -0.493 4.493 14 H 0.080 0.920 15 C 0.040 3.960 16 N -0.814 5.814 17 Si 0.984 3.016 18 H -0.259 1.259 19 H -0.267 1.267 20 H -0.259 1.259 21 C -0.262 4.262 22 N -0.325 5.325 23 N -0.375 5.375 24 C 0.089 3.911 25 H 0.091 0.909 26 H 0.099 0.901 27 H 0.092 0.908 28 H 0.159 0.841 29 H 0.056 0.944 30 H 0.085 0.915 31 H 0.394 0.606 32 H 0.123 0.877 33 H 0.102 0.898 34 H 0.289 0.711 35 H 0.109 0.891 36 H 0.084 0.916 37 H 0.122 0.878 38 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.363 -6.827 -6.413 19.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.042 4.042 3 C -0.310 4.310 4 C -0.113 4.113 5 C 0.092 3.908 6 N -0.373 5.373 7 C 0.149 3.851 8 C -0.358 4.358 9 C 0.122 3.878 10 F -0.140 7.140 11 C -0.335 4.335 12 C 0.132 3.868 13 C -0.522 4.522 14 H 0.098 0.902 15 C -0.177 4.177 16 N -0.438 5.438 17 Si 0.805 3.195 18 H -0.183 1.183 19 H -0.191 1.191 20 H -0.183 1.183 21 C -0.286 4.286 22 N -0.149 5.149 23 N -0.159 5.159 24 C -0.050 4.050 25 H 0.110 0.890 26 H 0.117 0.883 27 H 0.111 0.889 28 H 0.177 0.823 29 H 0.075 0.925 30 H 0.103 0.897 31 H 0.228 0.772 32 H 0.141 0.859 33 H 0.120 0.880 34 H 0.100 0.900 35 H 0.127 0.873 36 H 0.102 0.898 37 H 0.140 0.860 38 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -16.767 -8.277 -6.602 19.830 hybrid contribution 0.102 0.669 0.750 1.011 sum -16.664 -7.608 -5.852 19.231 Atomic orbital electron populations 1.20614 0.83680 1.05550 1.04607 1.21784 0.96653 0.86316 0.99495 1.21431 0.90932 1.00549 1.18126 1.22216 0.96142 0.91523 1.01406 1.19382 0.90479 0.96540 0.84389 1.44349 1.30292 1.55739 1.06879 1.17286 0.86131 0.89036 0.92636 1.19926 1.03398 1.14184 0.98327 1.17310 0.92288 0.95137 0.83093 1.91333 1.81056 1.83217 1.58352 1.20917 1.05945 1.15404 0.91246 1.17373 0.88894 0.87998 0.92570 1.19824 1.31350 1.07479 0.93510 0.90184 1.26784 0.91521 0.93324 1.06049 1.69909 1.32113 1.03891 1.37924 0.85221 0.80059 0.79047 0.75210 1.18281 1.19149 1.18329 1.20686 1.01822 1.12377 0.93759 1.77322 0.98646 1.13027 1.25871 1.48857 1.02913 1.07808 1.56275 1.22220 1.02395 0.75810 1.04599 0.89000 0.88270 0.88907 0.82294 0.92544 0.89672 0.77190 0.85905 0.87998 0.90047 0.87332 0.89763 0.85995 0.89411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.84 10.12 71.24 0.72 -0.12 16 2 C 0.09 1.77 6.93 41.40 0.29 2.06 16 3 C -0.28 -7.22 10.65 21.99 0.23 -6.98 16 4 C 0.05 1.63 6.59 43.10 0.28 1.92 16 5 C 0.22 7.39 5.46 85.63 0.47 7.85 16 6 N -0.74 -29.79 5.72 -343.31 -1.96 -31.76 16 7 C 0.25 12.02 6.64 38.16 0.25 12.28 16 8 C -0.33 -15.74 9.30 22.63 0.21 -15.53 16 9 C 0.14 7.04 7.28 22.30 0.16 7.21 16 10 F -0.16 -7.44 17.26 44.97 0.78 -6.66 16 11 C -0.31 -16.73 9.76 22.80 0.22 -16.51 16 12 C 0.14 7.57 5.57 -21.31 -0.12 7.45 16 13 C -0.49 -26.98 9.05 23.46 0.21 -26.77 16 14 H 0.08 4.21 7.91 -2.91 -0.02 4.18 16 15 C 0.04 2.00 5.14 85.25 0.44 2.44 16 16 N -0.81 -42.68 10.96 21.82 0.24 -42.44 16 17 Si 0.98 38.03 29.59 68.60 2.03 40.06 16 18 H -0.26 -9.75 7.11 99.48 0.71 -9.04 16 19 H -0.27 -9.72 7.11 99.48 0.71 -9.01 16 20 H -0.26 -9.71 7.11 99.48 0.71 -9.01 16 21 C -0.26 -14.05 8.53 22.86 0.20 -13.86 16 22 N -0.32 -10.54 12.58 -47.38 -0.60 -11.14 16 23 N -0.38 -8.83 4.01 -356.02 -1.43 -10.26 16 24 C 0.09 1.18 11.27 127.77 1.44 2.62 16 25 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 26 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 27 H 0.09 0.47 7.08 -2.39 -0.02 0.46 16 28 H 0.16 3.52 8.06 -2.91 -0.02 3.50 16 29 H 0.06 2.00 7.94 -2.39 -0.02 1.98 16 30 H 0.09 2.64 7.94 -2.39 -0.02 2.62 16 31 H 0.39 15.84 8.47 -92.71 -0.79 15.06 16 32 H 0.12 5.12 6.70 -2.91 -0.02 5.10 16 33 H 0.10 5.23 8.06 -2.91 -0.02 5.21 16 34 H 0.29 13.69 8.30 -92.71 -0.77 12.93 16 35 H 0.11 6.02 6.16 -2.91 -0.02 6.00 16 36 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 37 H 0.12 0.67 7.05 -2.39 -0.02 0.66 16 38 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 Total: -1.00 -68.31 329.97 4.38 -63.93 By element: Atomic # 1 Polarization: 33.89 SS G_CDS: 0.31 Total: 34.20 kcal Atomic # 6 Polarization: -40.95 SS G_CDS: 5.01 Total: -35.94 kcal Atomic # 7 Polarization: -91.84 SS G_CDS: -3.75 Total: -95.59 kcal Atomic # 9 Polarization: -7.44 SS G_CDS: 0.78 Total: -6.66 kcal Atomic # 14 Polarization: 38.03 SS G_CDS: 2.03 Total: 40.06 kcal Total: -68.31 4.38 -63.93 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167769647.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.096 kcal (2) G-P(sol) polarization free energy of solvation -68.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.931 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds