Wall clock time and date at job start Tue Mar 31 2020 06:31:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35314 * 126.12994 * 2 1 4 4 C 1.39872 * 107.92470 * 180.14629 * 3 2 1 5 5 C 1.50694 * 125.90154 * 179.86684 * 4 3 2 6 6 N 1.46497 * 109.47254 * 94.71472 * 5 4 3 7 7 C 1.38806 * 119.99931 * 179.72602 * 6 5 4 8 8 C 1.38624 * 120.21845 * 0.02562 * 7 6 5 9 9 C 1.38226 * 120.22161 * 179.69827 * 8 7 6 10 10 C 1.38792 * 120.65652 * 0.60620 * 9 8 7 11 11 C 1.37739 * 120.43190 * 359.67139 * 10 9 8 12 12 F 1.35095 * 120.11922 * 180.02562 * 11 10 9 13 13 C 1.40997 * 119.76406 * 0.02620 * 11 10 9 14 14 C 1.40995 * 120.32277 * 179.97438 * 13 11 10 15 15 H 1.08001 * 120.00084 * 214.55769 * 14 13 11 16 16 C 1.39914 * 119.99765 * 34.55286 * 14 13 11 17 17 N 1.30906 * 120.00044 * 210.10629 * 16 14 13 18 18 Si 1.86793 * 120.00014 * 30.10867 * 16 14 13 19 19 H 1.48500 * 109.47507 * 95.28118 * 18 16 14 20 20 H 1.48500 * 109.47208 * 215.28530 * 18 16 14 21 21 H 1.48500 * 109.47308 * 335.28084 * 18 16 14 22 22 N 1.30838 * 108.19854 * 359.60222 * 4 3 2 23 23 N 1.34954 * 126.12531 * 179.71010 * 2 1 3 24 24 C 1.46497 * 126.03720 * 359.97438 * 23 2 1 25 25 H 1.08996 * 109.47177 * 270.28594 * 1 2 3 26 26 H 1.08992 * 109.47086 * 30.29495 * 1 2 3 27 27 H 1.09010 * 109.46849 * 150.29002 * 1 2 3 28 28 H 1.07998 * 126.03732 * 0.03236 * 3 2 1 29 29 H 1.09008 * 109.47077 * 334.71562 * 5 4 3 30 30 H 1.08996 * 109.47022 * 214.71954 * 5 4 3 31 31 H 0.96998 * 119.99888 * 0.02562 * 6 5 4 32 32 H 1.08007 * 119.89247 * 359.97438 * 8 7 6 33 33 H 1.08001 * 119.67291 * 180.30202 * 9 8 7 34 34 H 1.07994 * 119.78539 * 179.70154 * 10 9 8 35 35 H 0.96996 * 120.00492 * 180.02562 * 17 16 14 36 36 H 1.08998 * 109.46985 * 270.02080 * 24 23 2 37 37 H 1.08995 * 109.47746 * 30.02710 * 24 23 2 38 38 H 1.09004 * 109.46892 * 150.02723 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3048 1.0929 0.0000 4 6 3.6335 0.6559 -0.0034 5 6 4.8543 1.5394 -0.0074 6 7 5.3203 1.7347 1.3677 7 6 6.4421 2.5135 1.6162 8 6 7.1246 3.1089 0.5668 9 6 8.2381 3.8895 0.8148 10 6 8.6956 4.0782 2.1115 11 6 8.0414 3.4946 3.1739 12 9 8.4918 3.6829 4.4336 13 6 6.9000 2.7000 2.9421 14 6 6.2217 2.0966 4.0209 15 1 5.7645 1.1261 3.8964 16 6 6.1409 2.7551 5.2527 17 7 6.0748 2.0630 6.3618 18 14 6.1273 4.6220 5.3146 19 1 4.7243 5.1052 5.3722 20 1 6.8595 5.0826 6.5217 21 1 6.7874 5.1624 4.0991 22 7 3.6334 -0.6524 0.0033 23 7 2.3026 -1.0901 0.0055 24 6 1.8539 -2.4846 0.0131 25 1 -0.3633 0.0051 1.0276 26 1 -0.3633 0.8873 -0.5184 27 1 -0.3633 -0.8927 -0.5094 28 1 1.9741 2.1210 0.0005 29 1 4.6026 2.5049 -0.4464 30 1 5.6422 1.0677 -0.5946 31 1 4.8475 1.3163 2.1040 32 1 6.7826 2.9661 -0.4477 33 1 8.7602 4.3532 -0.0091 34 1 9.5698 4.6869 2.2887 35 1 6.0184 2.5194 7.2158 36 1 1.7426 -2.8248 1.0426 37 1 0.8955 -2.5607 -0.5004 38 1 2.5899 -3.1059 -0.4973 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167770270.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:11 Heat of formation + Delta-G solvation = 59.216585 kcal Electronic energy + Delta-G solvation = -22259.147248 eV Core-core repulsion = 18824.703036 eV Total energy + Delta-G solvation = -3434.444212 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.129 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -47.48130 -41.23970 -37.98818 -35.03123 -33.50233 -33.04261 -32.05202 -30.36653 -28.74309 -27.09387 -26.90605 -25.14270 -24.45712 -21.14581 -20.37863 -20.23151 -19.20718 -17.67394 -16.78506 -16.44033 -15.74536 -15.46645 -15.23828 -14.29368 -14.26796 -14.13423 -13.96380 -13.80231 -13.64213 -13.39425 -13.06980 -12.80572 -12.63140 -12.46339 -12.37735 -12.02623 -11.78041 -11.50667 -11.33180 -11.01779 -10.75252 -10.43538 -10.24232 -9.95854 -9.50396 -9.13873 -9.05544 -8.88209 -8.45833 -7.40499 -6.86142 -6.49276 -4.20721 1.84724 2.47888 2.59539 2.74923 2.79527 3.28250 3.35128 3.44194 4.17958 4.40535 4.51008 4.56259 4.64026 4.86594 4.93466 5.03170 5.23878 5.29550 5.31908 5.47980 5.59275 5.74618 5.85682 5.94971 5.96629 6.05857 6.26998 6.32096 6.39811 6.68424 6.83970 7.01689 7.10573 7.27858 7.31440 7.58050 7.75675 7.78848 8.06132 8.25976 8.41443 8.73453 8.80268 8.92976 10.15037 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.018436 B = 0.004566 C = 0.004036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1518.430090 B = 6130.866564 C = 6935.220865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.074 3.926 3 C -0.256 4.256 4 C 0.069 3.931 5 C 0.216 3.784 6 N -0.736 5.736 7 C 0.154 3.846 8 C -0.184 4.184 9 C -0.170 4.170 10 C -0.159 4.159 11 C 0.001 3.999 12 F -0.151 7.151 13 C 0.025 3.975 14 C -0.467 4.467 15 H 0.088 0.912 16 C 0.097 3.903 17 N -0.796 5.796 18 Si 0.914 3.086 19 H -0.293 1.293 20 H -0.281 1.281 21 H -0.244 1.244 22 N -0.278 5.278 23 N -0.375 5.375 24 C 0.101 3.899 25 H 0.079 0.921 26 H 0.085 0.915 27 H 0.067 0.933 28 H 0.148 0.852 29 H 0.070 0.930 30 H 0.063 0.937 31 H 0.402 0.598 32 H 0.100 0.900 33 H 0.100 0.900 34 H 0.100 0.900 35 H 0.283 0.717 36 H 0.074 0.926 37 H 0.084 0.916 38 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.980 -3.737 -11.774 16.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.053 4.053 3 C -0.285 4.285 4 C -0.097 4.097 5 C 0.089 3.911 6 N -0.370 5.370 7 C 0.053 3.947 8 C -0.208 4.208 9 C -0.190 4.190 10 C -0.180 4.180 11 C -0.020 4.020 12 F -0.131 7.131 13 C 0.019 3.981 14 C -0.495 4.495 15 H 0.106 0.894 16 C -0.124 4.124 17 N -0.420 5.420 18 Si 0.741 3.259 19 H -0.221 1.221 20 H -0.207 1.207 21 H -0.167 1.167 22 N -0.101 5.101 23 N -0.159 5.159 24 C -0.040 4.040 25 H 0.098 0.902 26 H 0.103 0.897 27 H 0.086 0.914 28 H 0.166 0.834 29 H 0.088 0.912 30 H 0.081 0.919 31 H 0.238 0.762 32 H 0.118 0.882 33 H 0.118 0.882 34 H 0.118 0.882 35 H 0.093 0.907 36 H 0.092 0.908 37 H 0.102 0.898 38 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -10.362 -5.037 -11.634 16.373 hybrid contribution -0.660 1.191 0.780 1.570 sum -11.021 -3.845 -10.854 15.939 Atomic orbital electron populations 1.20424 0.87455 1.03524 1.03344 1.21060 0.94577 0.87377 1.02293 1.21171 0.91623 0.99127 1.16623 1.22351 0.95815 0.91489 1.00058 1.19326 0.89907 0.95383 0.86451 1.43939 1.30871 1.56832 1.05386 1.17558 0.88401 0.96001 0.92761 1.20124 0.99429 1.05083 0.96165 1.19936 0.99593 1.04808 0.94619 1.20374 1.01210 1.03837 0.92585 1.17281 0.97118 1.09495 0.78147 1.91004 1.88545 1.94331 1.39187 1.17205 0.92944 0.96003 0.91929 1.18827 1.32750 1.05004 0.92950 0.89423 1.26092 0.90223 1.01643 0.94431 1.69837 1.33580 1.39430 0.99116 0.86212 0.76871 0.82752 0.80109 1.22133 1.20721 1.16735 1.77416 0.95896 1.12621 1.24164 1.48460 1.03951 1.05899 1.57557 1.21804 1.00703 0.78131 1.03375 0.90189 0.89665 0.91406 0.83422 0.91200 0.91857 0.76158 0.88221 0.88207 0.88214 0.90715 0.90751 0.89768 0.89330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.67 10.12 36.01 0.36 -0.31 16 2 C 0.07 0.90 6.93 -82.26 -0.57 0.33 16 3 C -0.26 -3.61 10.65 -40.01 -0.43 -4.04 16 4 C 0.07 1.13 6.59 -82.41 -0.54 0.58 16 5 C 0.22 3.61 5.46 -5.20 -0.03 3.58 16 6 N -0.74 -15.09 5.63 -59.40 -0.33 -15.42 16 7 C 0.15 3.54 6.68 -83.32 -0.56 2.98 16 8 C -0.18 -3.84 9.29 -39.44 -0.37 -4.21 16 9 C -0.17 -3.53 10.03 -39.38 -0.40 -3.93 16 10 C -0.16 -3.64 9.99 -39.56 -0.40 -4.04 16 11 C 0.00 0.03 5.05 -38.72 -0.20 -0.17 16 12 F -0.15 -4.05 12.82 2.25 0.03 -4.02 16 13 C 0.03 0.65 4.89 -106.56 -0.52 0.13 16 14 C -0.47 -12.94 8.64 -37.91 -0.33 -13.26 16 15 H 0.09 2.52 7.20 -52.49 -0.38 2.14 16 16 C 0.10 2.66 4.70 -17.32 -0.08 2.58 16 17 N -0.80 -22.22 13.93 55.55 0.77 -21.45 16 18 Si 0.91 22.62 25.30 -169.99 -4.30 18.32 16 19 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 20 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 21 H -0.24 -6.18 5.49 56.52 0.31 -5.87 16 22 N -0.28 -4.68 12.58 33.67 0.42 -4.26 16 23 N -0.38 -4.99 4.01 -63.89 -0.26 -5.25 16 24 C 0.10 0.86 11.27 59.85 0.67 1.53 16 25 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 26 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.07 0.38 7.08 -51.92 -0.37 0.01 16 28 H 0.15 1.83 8.06 -52.49 -0.42 1.41 16 29 H 0.07 1.05 7.95 -51.92 -0.41 0.64 16 30 H 0.06 1.04 7.93 -51.93 -0.41 0.63 16 31 H 0.40 8.79 6.86 -40.82 -0.28 8.51 16 32 H 0.10 1.79 6.71 -52.48 -0.35 1.43 16 33 H 0.10 1.77 8.06 -52.49 -0.42 1.34 16 34 H 0.10 2.05 8.06 -52.49 -0.42 1.63 16 35 H 0.28 7.21 8.30 -40.82 -0.34 6.87 16 36 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.08 0.45 7.05 -51.93 -0.37 0.08 16 38 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 320.07 15.07 4.82 4.82 Total: -1.00 -32.03 320.07 -6.96 -38.99 By element: Atomic # 1 Polarization: 11.24 SS G_CDS: -4.75 Total: 6.49 kcal Atomic # 6 Polarization: -14.86 SS G_CDS: -3.37 Total: -18.23 kcal Atomic # 7 Polarization: -46.98 SS G_CDS: 0.61 Total: -46.37 kcal Atomic # 9 Polarization: -4.05 SS G_CDS: 0.03 Total: -4.02 kcal Atomic # 14 Polarization: 22.62 SS G_CDS: -4.30 Total: 18.32 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -32.03 -6.96 -38.99 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167770270.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.211 kcal (2) G-P(sol) polarization free energy of solvation -32.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.995 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds