Wall clock time and date at job start Tue Mar 31 2020 06:31:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35314 * 126.12994 * 2 1 4 4 C 1.39872 * 107.92470 * 180.14629 * 3 2 1 5 5 C 1.50694 * 125.90154 * 179.86684 * 4 3 2 6 6 N 1.46497 * 109.47254 * 94.71472 * 5 4 3 7 7 C 1.38806 * 119.99931 * 179.72602 * 6 5 4 8 8 C 1.38624 * 120.21845 * 0.02562 * 7 6 5 9 9 C 1.38226 * 120.22161 * 179.69827 * 8 7 6 10 10 C 1.38792 * 120.65652 * 0.60620 * 9 8 7 11 11 C 1.37739 * 120.43190 * 359.67139 * 10 9 8 12 12 F 1.35095 * 120.11922 * 180.02562 * 11 10 9 13 13 C 1.40997 * 119.76406 * 0.02620 * 11 10 9 14 14 C 1.40995 * 120.32277 * 179.97438 * 13 11 10 15 15 H 1.08001 * 120.00084 * 214.55769 * 14 13 11 16 16 C 1.39914 * 119.99765 * 34.55286 * 14 13 11 17 17 N 1.30906 * 120.00044 * 210.10629 * 16 14 13 18 18 Si 1.86793 * 120.00014 * 30.10867 * 16 14 13 19 19 H 1.48500 * 109.47507 * 95.28118 * 18 16 14 20 20 H 1.48500 * 109.47208 * 215.28530 * 18 16 14 21 21 H 1.48500 * 109.47308 * 335.28084 * 18 16 14 22 22 N 1.30838 * 108.19854 * 359.60222 * 4 3 2 23 23 N 1.34954 * 126.12531 * 179.71010 * 2 1 3 24 24 C 1.46497 * 126.03720 * 359.97438 * 23 2 1 25 25 H 1.08996 * 109.47177 * 270.28594 * 1 2 3 26 26 H 1.08992 * 109.47086 * 30.29495 * 1 2 3 27 27 H 1.09010 * 109.46849 * 150.29002 * 1 2 3 28 28 H 1.07998 * 126.03732 * 0.03236 * 3 2 1 29 29 H 1.09008 * 109.47077 * 334.71562 * 5 4 3 30 30 H 1.08996 * 109.47022 * 214.71954 * 5 4 3 31 31 H 0.96998 * 119.99888 * 0.02562 * 6 5 4 32 32 H 1.08007 * 119.89247 * 359.97438 * 8 7 6 33 33 H 1.08001 * 119.67291 * 180.30202 * 9 8 7 34 34 H 1.07994 * 119.78539 * 179.70154 * 10 9 8 35 35 H 0.96996 * 120.00492 * 180.02562 * 17 16 14 36 36 H 1.08998 * 109.46985 * 270.02080 * 24 23 2 37 37 H 1.08995 * 109.47746 * 30.02710 * 24 23 2 38 38 H 1.09004 * 109.46892 * 150.02723 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3048 1.0929 0.0000 4 6 3.6335 0.6559 -0.0034 5 6 4.8543 1.5394 -0.0074 6 7 5.3203 1.7347 1.3677 7 6 6.4421 2.5135 1.6162 8 6 7.1246 3.1089 0.5668 9 6 8.2381 3.8895 0.8148 10 6 8.6956 4.0782 2.1115 11 6 8.0414 3.4946 3.1739 12 9 8.4918 3.6829 4.4336 13 6 6.9000 2.7000 2.9421 14 6 6.2217 2.0966 4.0209 15 1 5.7645 1.1261 3.8964 16 6 6.1409 2.7551 5.2527 17 7 6.0748 2.0630 6.3618 18 14 6.1273 4.6220 5.3146 19 1 4.7243 5.1052 5.3722 20 1 6.8595 5.0826 6.5217 21 1 6.7874 5.1624 4.0991 22 7 3.6334 -0.6524 0.0033 23 7 2.3026 -1.0901 0.0055 24 6 1.8539 -2.4846 0.0131 25 1 -0.3633 0.0051 1.0276 26 1 -0.3633 0.8873 -0.5184 27 1 -0.3633 -0.8927 -0.5094 28 1 1.9741 2.1210 0.0005 29 1 4.6026 2.5049 -0.4464 30 1 5.6422 1.0677 -0.5946 31 1 4.8475 1.3163 2.1040 32 1 6.7826 2.9661 -0.4477 33 1 8.7602 4.3532 -0.0091 34 1 9.5698 4.6869 2.2887 35 1 6.0184 2.5194 7.2158 36 1 1.7426 -2.8248 1.0426 37 1 0.8955 -2.5607 -0.5004 38 1 2.5899 -3.1059 -0.4973 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167770270.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:10 Heat of formation + Delta-G solvation = 38.286619 kcal Electronic energy + Delta-G solvation = -22260.054839 eV Core-core repulsion = 18824.703036 eV Total energy + Delta-G solvation = -3435.351804 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.129 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -49.50316 -42.26836 -39.74667 -36.47004 -35.46442 -34.24691 -32.89039 -32.19938 -30.26674 -28.33920 -27.90113 -26.82693 -25.80471 -22.90397 -22.08167 -21.35905 -20.34243 -19.66198 -18.36801 -17.63973 -17.33611 -17.03990 -16.59723 -16.17342 -15.89783 -15.75058 -15.31698 -15.23658 -14.96348 -14.72862 -14.21091 -13.96994 -13.84768 -13.53178 -13.47690 -13.24514 -13.20977 -13.15084 -12.88037 -12.78604 -12.48440 -12.01056 -11.88119 -11.57166 -11.42836 -10.98266 -10.64215 -10.17007 -9.47665 -9.30572 -8.88086 -8.22776 -6.23032 0.72350 0.82202 0.97792 1.29258 1.40222 1.45188 1.59137 1.62883 2.19980 2.61295 3.03321 3.42855 3.50524 3.71699 4.01388 4.06060 4.27281 4.35583 4.39592 4.47130 4.56825 4.59831 4.61494 4.70375 4.75971 4.81641 4.88180 5.02033 5.07475 5.25740 5.27539 5.45627 5.56895 5.60231 5.70462 5.95483 6.12825 6.15083 6.38672 6.52329 6.70809 6.81377 6.97996 7.07422 8.19743 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.018436 B = 0.004566 C = 0.004036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1518.430090 B = 6130.866564 C = 6935.220865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.083 3.917 3 C -0.282 4.282 4 C 0.050 3.950 5 C 0.217 3.783 6 N -0.737 5.737 7 C 0.157 3.843 8 C -0.186 4.186 9 C -0.137 4.137 10 C -0.180 4.180 11 C -0.016 4.016 12 F -0.164 7.164 13 C -0.010 4.010 14 C -0.495 4.495 15 H 0.056 0.944 16 C 0.062 3.938 17 N -0.842 5.842 18 Si 0.958 3.042 19 H -0.283 1.283 20 H -0.277 1.277 21 H -0.251 1.251 22 N -0.325 5.325 23 N -0.377 5.377 24 C 0.090 3.910 25 H 0.087 0.913 26 H 0.100 0.900 27 H 0.093 0.907 28 H 0.159 0.841 29 H 0.092 0.908 30 H 0.066 0.934 31 H 0.392 0.608 32 H 0.137 0.863 33 H 0.146 0.854 34 H 0.124 0.876 35 H 0.288 0.712 36 H 0.079 0.921 37 H 0.122 0.878 38 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.980 -2.779 -14.831 19.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.045 4.045 3 C -0.311 4.311 4 C -0.115 4.115 5 C 0.092 3.908 6 N -0.368 5.368 7 C 0.054 3.946 8 C -0.210 4.210 9 C -0.156 4.156 10 C -0.201 4.201 11 C -0.037 4.037 12 F -0.143 7.143 13 C -0.016 4.016 14 C -0.525 4.525 15 H 0.074 0.926 16 C -0.153 4.153 17 N -0.469 5.469 18 Si 0.783 3.217 19 H -0.211 1.211 20 H -0.202 1.202 21 H -0.176 1.176 22 N -0.149 5.149 23 N -0.160 5.160 24 C -0.050 4.050 25 H 0.106 0.894 26 H 0.119 0.881 27 H 0.112 0.888 28 H 0.177 0.823 29 H 0.110 0.890 30 H 0.084 0.916 31 H 0.226 0.774 32 H 0.155 0.845 33 H 0.164 0.836 34 H 0.142 0.858 35 H 0.098 0.902 36 H 0.098 0.902 37 H 0.141 0.859 38 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -11.374 -4.093 -14.723 19.050 hybrid contribution -0.338 0.815 1.423 1.674 sum -11.712 -3.278 -13.300 18.022 Atomic orbital electron populations 1.20606 0.83836 1.05612 1.04413 1.21778 0.96631 0.86437 0.99657 1.21445 0.91143 1.00482 1.18034 1.22348 0.96440 0.91574 1.01104 1.19477 0.90455 0.96712 0.84166 1.44156 1.30024 1.55784 1.06838 1.17853 0.88910 0.95476 0.92346 1.20581 0.99073 1.04064 0.97271 1.20565 0.98148 1.01862 0.95000 1.20724 1.02192 1.04567 0.92573 1.17799 0.97546 1.09828 0.78514 1.90966 1.88657 1.94442 1.40264 1.17402 0.93648 0.97620 0.92940 1.18712 1.34858 1.04524 0.94376 0.92601 1.26639 0.90132 1.04400 0.94153 1.69868 1.36860 1.40540 0.99612 0.85551 0.77129 0.79372 0.79610 1.21098 1.20241 1.17551 1.77295 0.98563 1.13135 1.25877 1.48837 1.03011 1.07743 1.56439 1.22200 1.02472 0.75933 1.04385 0.89405 0.88132 0.88827 0.82316 0.89045 0.91597 0.77443 0.84490 0.83617 0.85847 0.90203 0.90208 0.85937 0.89225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.02 10.12 71.24 0.72 -0.30 16 2 C 0.08 1.88 6.93 41.40 0.29 2.17 16 3 C -0.28 -7.68 10.65 21.99 0.23 -7.45 16 4 C 0.05 1.62 6.59 43.10 0.28 1.91 16 5 C 0.22 7.03 5.46 85.63 0.47 7.50 16 6 N -0.74 -30.38 5.63 -341.85 -1.92 -32.30 16 7 C 0.16 7.12 6.68 38.94 0.26 7.38 16 8 C -0.19 -7.11 9.29 22.36 0.21 -6.90 16 9 C -0.14 -5.06 10.03 22.40 0.22 -4.84 16 10 C -0.18 -7.74 9.99 22.28 0.22 -7.52 16 11 C -0.02 -0.81 5.05 22.83 0.12 -0.69 16 12 F -0.16 -8.89 12.82 44.97 0.58 -8.32 16 13 C -0.01 -0.55 4.89 -21.12 -0.10 -0.66 16 14 C -0.49 -28.87 8.64 23.35 0.20 -28.66 16 15 H 0.06 3.48 7.20 -2.91 -0.02 3.45 16 16 C 0.06 3.57 4.70 85.24 0.40 3.97 16 17 N -0.84 -49.53 13.93 21.83 0.30 -49.22 16 18 Si 0.96 47.65 25.30 68.60 1.74 49.38 16 19 H -0.28 -13.38 7.11 99.48 0.71 -12.67 16 20 H -0.28 -13.33 7.11 99.48 0.71 -12.62 16 21 H -0.25 -12.66 5.49 99.48 0.55 -12.11 16 22 N -0.32 -10.95 12.58 -47.39 -0.60 -11.54 16 23 N -0.38 -9.57 4.01 -356.04 -1.43 -11.00 16 24 C 0.09 1.35 11.27 127.77 1.44 2.79 16 25 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 26 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 27 H 0.09 0.64 7.08 -2.38 -0.02 0.62 16 28 H 0.16 3.75 8.06 -2.91 -0.02 3.73 16 29 H 0.09 2.54 7.95 -2.38 -0.02 2.52 16 30 H 0.07 2.08 7.93 -2.39 -0.02 2.06 16 31 H 0.39 17.92 6.86 -92.71 -0.64 17.28 16 32 H 0.14 4.23 6.71 -2.91 -0.02 4.21 16 33 H 0.15 4.15 8.06 -2.91 -0.02 4.13 16 34 H 0.12 4.67 8.06 -2.91 -0.02 4.65 16 35 H 0.29 15.43 8.30 -92.71 -0.77 14.66 16 36 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 37 H 0.12 0.87 7.05 -2.39 -0.02 0.86 16 38 H 0.09 1.33 8.14 -2.38 -0.02 1.31 16 Total: -1.00 -73.19 320.07 3.93 -69.27 By element: Atomic # 1 Polarization: 24.74 SS G_CDS: 0.29 Total: 25.04 kcal Atomic # 6 Polarization: -36.26 SS G_CDS: 4.96 Total: -31.30 kcal Atomic # 7 Polarization: -100.43 SS G_CDS: -3.64 Total: -104.07 kcal Atomic # 9 Polarization: -8.89 SS G_CDS: 0.58 Total: -8.32 kcal Atomic # 14 Polarization: 47.65 SS G_CDS: 1.74 Total: 49.38 kcal Total: -73.19 3.93 -69.27 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167770270.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.553 kcal (2) G-P(sol) polarization free energy of solvation -73.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.266 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds