Wall clock time and date at job start Tue Mar 31 2020 06:23:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 119.99725 * 2 1 4 4 H 1.48502 * 109.46693 * 269.99935 * 3 2 1 5 5 H 1.48495 * 109.47317 * 29.99859 * 3 2 1 6 6 H 1.48497 * 109.47236 * 150.00338 * 3 2 1 7 7 C 1.37867 * 120.00018 * 179.97438 * 2 1 3 8 8 C 1.51270 * 120.85172 * 359.97438 * 7 2 1 9 9 C 1.53232 * 108.69741 * 231.22989 * 8 7 2 10 10 C 1.53005 * 109.37855 * 305.66359 * 9 8 7 11 11 H 1.09005 * 109.26030 * 303.19288 * 10 9 8 12 12 N 1.46500 * 109.33824 * 183.47556 * 10 9 8 13 13 C 1.40036 * 120.00168 * 84.48380 * 12 10 9 14 14 C 1.39317 * 119.85806 * 359.73161 * 13 12 10 15 15 C 1.36559 * 120.61000 * 179.73150 * 14 13 12 16 16 C 1.39796 * 120.00751 * 0.52090 * 15 14 13 17 17 N 1.35874 * 133.47537 * 179.75768 * 16 15 14 18 18 C 1.30057 * 109.67572 * 179.97438 * 17 16 15 19 19 N 1.36142 * 110.09013 * 0.02562 * 18 17 16 20 20 H 0.97010 * 126.36068 * 180.02562 * 19 18 17 21 21 C 1.38166 * 107.27951 * 359.97438 * 19 18 17 22 22 C 1.38623 * 119.86136 * 180.02562 * 13 12 10 23 23 F 1.35096 * 120.19782 * 359.97438 * 22 13 12 24 24 C 1.52953 * 109.98742 * 63.31008 * 10 9 8 25 25 C 1.51271 * 120.84882 * 179.97438 * 7 2 1 26 26 H 0.97001 * 120.00180 * 359.97438 * 1 2 3 27 27 H 1.09002 * 109.62532 * 351.04191 * 8 7 2 28 28 H 1.09001 * 109.62715 * 111.41878 * 8 7 2 29 29 H 1.09003 * 109.48094 * 65.44635 * 9 8 7 30 30 H 1.08998 * 109.48540 * 185.48862 * 9 8 7 31 31 H 0.96996 * 120.00065 * 264.48487 * 12 10 9 32 32 H 1.08002 * 119.69875 * 359.97438 * 14 13 12 33 33 H 1.07995 * 119.99253 * 180.29631 * 15 14 13 34 34 H 1.08006 * 124.95528 * 180.02562 * 18 17 16 35 35 H 1.08997 * 109.48509 * 176.50033 * 24 10 9 36 36 H 1.09004 * 109.49182 * 56.46944 * 24 10 9 37 37 H 1.08996 * 109.62720 * 248.38384 * 25 7 2 38 38 H 1.08991 * 109.62768 * 8.96063 * 25 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.6999 7 6 2.0045 -1.1940 0.0005 8 6 1.2677 -2.5151 0.0017 9 6 1.8227 -3.3861 1.1337 10 6 3.3406 -3.5064 0.9842 11 1 3.5739 -3.9122 -0.0003 12 7 3.8601 -4.4060 2.0172 13 6 3.8526 -5.7906 1.8082 14 6 3.3452 -6.3099 0.6191 15 6 3.3354 -7.6572 0.3969 16 6 3.8275 -8.5301 1.3717 17 7 3.9441 -9.8820 1.4429 18 6 4.4765 -10.2162 2.5815 19 7 4.7380 -9.1029 3.3202 20 1 5.1344 -9.0799 4.2053 21 6 4.3350 -8.0117 2.5746 22 6 4.3443 -6.6392 2.7878 23 9 4.8309 -6.1342 3.9425 24 6 3.9915 -2.1304 1.1341 25 6 3.5170 -1.2164 0.0000 26 1 -0.4850 0.8400 0.0004 27 1 0.2037 -2.3408 0.1619 28 1 1.4164 -3.0181 -0.9538 29 1 1.5900 -2.9257 2.0940 30 1 1.3699 -4.3764 1.0859 31 1 4.2092 -4.0425 2.8459 32 1 2.9597 -5.6404 -0.1357 33 1 2.9442 -8.0486 -0.5305 34 1 4.6813 -11.2291 2.8953 35 1 5.0755 -2.2340 1.0883 36 1 3.7080 -1.6965 2.0931 37 1 3.8771 -1.6006 -0.9543 38 1 3.8982 -0.2077 0.1590 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167845614.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:48 Heat of formation + Delta-G solvation = 14.584162 kcal Electronic energy + Delta-G solvation = -22543.502310 eV Core-core repulsion = 19107.122691 eV Total energy + Delta-G solvation = -3436.379619 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.129 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -48.59857 -41.93246 -38.62376 -36.55383 -33.90134 -32.82481 -31.67083 -29.86992 -29.48226 -28.48505 -26.40105 -23.32798 -22.63282 -21.66213 -21.40112 -21.08097 -19.57018 -18.44956 -17.33599 -17.22012 -16.05532 -15.82282 -15.46682 -15.24129 -14.56921 -14.52889 -14.39014 -14.32838 -13.39472 -13.14432 -12.89262 -12.57186 -12.45859 -12.34326 -11.87785 -11.60487 -11.48578 -11.09436 -10.92231 -10.77805 -10.59399 -10.27243 -10.18201 -10.00432 -9.56805 -9.46369 -8.97359 -8.68038 -8.51720 -8.26230 -6.96812 -6.14876 -4.06968 1.04133 1.54576 2.77844 2.79006 3.23185 3.31093 3.32249 3.68267 3.87698 4.28281 4.33015 4.42660 4.70878 5.10362 5.18711 5.24102 5.30774 5.48593 5.54477 5.79019 6.01099 6.09122 6.20381 6.33924 6.40583 6.42955 6.54206 6.65255 6.68670 6.75954 6.91291 6.97192 7.03116 7.25811 7.30597 7.52838 7.60806 7.66882 7.79406 7.83091 7.96584 8.32671 8.91635 9.48799 10.94387 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.036427 B = 0.003647 C = 0.003470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.484515 B = 7676.732241 C = 8067.325037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.077 3.923 3 Si 0.886 3.114 4 H -0.278 1.278 5 H -0.290 1.290 6 H -0.265 1.265 7 C -0.490 4.490 8 C 0.011 3.989 9 C -0.121 4.121 10 C 0.158 3.842 11 H 0.073 0.927 12 N -0.729 5.729 13 C 0.232 3.768 14 C -0.166 4.166 15 C -0.022 4.022 16 C 0.005 3.995 17 N -0.483 5.483 18 C 0.238 3.762 19 N -0.602 5.602 20 H 0.422 0.578 21 C 0.071 3.929 22 C -0.020 4.020 23 F -0.150 7.150 24 C -0.112 4.112 25 C -0.017 4.017 26 H 0.265 0.735 27 H 0.059 0.941 28 H 0.005 0.995 29 H 0.051 0.949 30 H 0.036 0.964 31 H 0.398 0.602 32 H 0.146 0.854 33 H 0.135 0.865 34 H 0.213 0.787 35 H 0.038 0.962 36 H 0.056 0.944 37 H 0.020 0.980 38 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.169 -14.948 5.755 18.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.126 4.126 3 Si 0.715 3.285 4 H -0.204 1.204 5 H -0.216 1.216 6 H -0.190 1.190 7 C -0.509 4.509 8 C -0.027 4.027 9 C -0.160 4.160 10 C 0.055 3.945 11 H 0.091 0.909 12 N -0.353 5.353 13 C 0.123 3.877 14 C -0.189 4.189 15 C -0.042 4.042 16 C -0.113 4.113 17 N -0.202 5.202 18 C -0.049 4.049 19 N -0.215 5.215 20 H 0.260 0.740 21 C -0.041 4.041 22 C -0.050 4.050 23 F -0.129 7.129 24 C -0.151 4.151 25 C -0.055 4.055 26 H 0.075 0.925 27 H 0.077 0.923 28 H 0.023 0.977 29 H 0.070 0.930 30 H 0.055 0.945 31 H 0.233 0.767 32 H 0.163 0.837 33 H 0.153 0.847 34 H 0.230 0.770 35 H 0.057 0.943 36 H 0.074 0.926 37 H 0.038 0.962 38 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 8.632 -15.190 4.887 18.142 hybrid contribution 1.100 1.603 1.862 2.692 sum 9.732 -13.587 6.750 18.024 Atomic orbital electron populations 1.69834 1.06160 1.26988 1.49564 1.24851 0.94716 0.98581 0.94488 0.86690 0.79941 0.83354 0.78538 1.20354 1.21647 1.18996 1.20027 0.89236 0.91574 1.50096 1.19358 0.98805 0.92735 0.91758 1.22111 0.93325 0.98603 1.01946 1.21134 0.94783 0.89005 0.89596 0.90912 1.45332 1.67023 1.01441 1.21535 1.17558 0.93262 0.84587 0.92340 1.20376 1.06158 0.95186 0.97226 1.19889 0.96016 0.90922 0.97418 1.18698 1.08171 0.89894 0.94577 1.70327 1.19139 1.11752 1.18943 1.25167 0.99074 0.92621 0.88045 1.43063 1.54327 1.05354 1.18729 0.73961 1.18469 1.03205 0.87756 0.94678 1.15555 1.16101 0.87312 0.86001 1.91374 1.87025 1.87667 1.46836 1.21820 0.96911 0.94609 1.01753 1.19774 0.96860 0.95481 0.93414 0.92532 0.92290 0.97658 0.92999 0.94535 0.76741 0.83660 0.84681 0.77043 0.94313 0.92554 0.96207 0.94367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.96 12.73 55.43 0.71 -24.25 16 2 C 0.08 2.03 5.46 -17.82 -0.10 1.93 16 3 Si 0.89 20.38 27.53 -169.99 -4.68 15.70 16 4 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 5 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.26 -5.84 6.10 56.52 0.35 -5.50 16 7 C -0.49 -12.30 5.52 -98.92 -0.55 -12.85 16 8 C 0.01 0.27 5.96 -27.48 -0.16 0.11 16 9 C -0.12 -2.43 5.41 -26.61 -0.14 -2.58 16 10 C 0.16 2.81 2.05 -67.95 -0.14 2.67 16 11 H 0.07 1.29 6.49 -51.93 -0.34 0.95 16 12 N -0.73 -11.56 5.25 -52.05 -0.27 -11.83 16 13 C 0.23 3.59 6.64 -83.57 -0.55 3.04 16 14 C -0.17 -2.42 8.70 -39.79 -0.35 -2.77 16 15 C -0.02 -0.31 10.04 -39.61 -0.40 -0.70 16 16 C 0.01 0.07 7.23 -84.65 -0.61 -0.54 16 17 N -0.48 -6.56 11.27 -12.01 -0.14 -6.69 16 18 C 0.24 2.30 12.97 -89.73 -1.16 1.14 16 19 N -0.60 -6.14 6.24 -11.71 -0.07 -6.21 16 20 H 0.42 2.97 8.96 -40.82 -0.37 2.60 16 21 C 0.07 0.99 7.28 -83.92 -0.61 0.38 16 22 C -0.02 -0.30 7.32 -39.20 -0.29 -0.59 16 23 F -0.15 -2.23 16.63 2.25 0.04 -2.19 16 24 C -0.11 -2.11 5.41 -26.65 -0.14 -2.26 16 25 C -0.02 -0.38 5.59 -27.50 -0.15 -0.53 16 26 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 27 H 0.06 1.56 7.07 -51.93 -0.37 1.19 16 28 H 0.01 0.12 8.14 -51.93 -0.42 -0.30 16 29 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 30 H 0.04 0.69 7.65 -51.93 -0.40 0.29 16 31 H 0.40 6.02 8.07 -40.82 -0.33 5.69 16 32 H 0.15 2.09 6.05 -52.49 -0.32 1.77 16 33 H 0.14 1.60 8.06 -52.49 -0.42 1.18 16 34 H 0.21 0.94 8.06 -52.48 -0.42 0.52 16 35 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 37 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 38 H 0.04 0.84 4.59 -51.93 -0.24 0.60 16 LS Contribution 309.58 15.07 4.67 4.67 Total: -1.00 -29.75 309.58 -9.62 -39.36 By element: Atomic # 1 Polarization: 9.52 SS G_CDS: -4.50 Total: 5.02 kcal Atomic # 6 Polarization: -8.20 SS G_CDS: -5.36 Total: -13.56 kcal Atomic # 7 Polarization: -49.22 SS G_CDS: 0.22 Total: -49.00 kcal Atomic # 9 Polarization: -2.23 SS G_CDS: 0.04 Total: -2.19 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -4.68 Total: 15.70 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -29.75 -9.62 -39.36 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167845614.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.949 kcal (2) G-P(sol) polarization free energy of solvation -29.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.365 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds