Wall clock time and date at job start Tue Mar 31 2020 06:23:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86798 * 120.00001 * 2 1 4 4 H 1.48503 * 109.46900 * 239.99705 * 3 2 1 5 5 H 1.48497 * 109.47221 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47319 * 120.00186 * 3 2 1 7 7 C 1.37879 * 119.99722 * 179.97438 * 2 1 3 8 8 C 1.51267 * 120.85036 * 0.02562 * 7 2 1 9 9 C 1.53236 * 108.53325 * 231.32227 * 8 7 2 10 10 C 1.52955 * 109.40289 * 305.37023 * 9 8 7 11 11 H 1.09003 * 109.41439 * 303.49240 * 10 9 8 12 12 N 1.46498 * 109.41143 * 183.70673 * 10 9 8 13 13 C 1.39915 * 120.00070 * 155.00004 * 12 10 9 14 14 C 1.38231 * 119.81077 * 179.97438 * 13 12 10 15 15 C 1.39772 * 119.75383 * 179.97438 * 14 13 12 16 16 N 1.35785 * 133.47984 * 179.97438 * 15 14 13 17 17 C 1.30127 * 109.69337 * 180.02562 * 16 15 14 18 18 N 1.35962 * 110.10566 * 359.97438 * 17 16 15 19 19 H 0.97002 * 126.35980 * 180.02562 * 18 17 16 20 20 C 1.38370 * 107.26704 * 0.02562 * 18 17 16 21 21 C 1.38985 * 133.96983 * 179.97438 * 20 18 17 22 22 F 1.35102 * 120.05725 * 0.02562 * 21 20 18 23 23 C 1.37988 * 119.88771 * 179.76298 * 21 20 18 24 24 C 1.52958 * 109.81879 * 63.59902 * 10 9 8 25 25 C 1.51264 * 120.84977 * 179.97438 * 7 2 1 26 26 H 0.96999 * 119.99814 * 359.97438 * 1 2 3 27 27 H 1.08991 * 109.63053 * 111.60583 * 8 7 2 28 28 H 1.09003 * 109.62740 * 351.03061 * 8 7 2 29 29 H 1.09000 * 109.47925 * 65.35303 * 9 8 7 30 30 H 1.09001 * 109.48132 * 185.39228 * 9 8 7 31 31 H 0.97005 * 120.00159 * 334.99833 * 12 10 9 32 32 H 1.07998 * 120.11841 * 359.97438 * 14 13 12 33 33 H 1.07995 * 124.95164 * 180.02562 * 17 16 15 34 34 H 1.07997 * 119.82067 * 180.27048 * 23 21 20 35 35 H 1.09000 * 109.48176 * 56.37933 * 24 10 9 36 36 H 1.08998 * 109.48079 * 176.42178 * 24 10 9 37 37 H 1.09004 * 109.62227 * 8.96406 * 25 7 2 38 38 H 1.09004 * 109.78642 * 248.48608 * 25 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 6 1.2676 -2.5152 0.0005 9 6 1.8229 -3.3826 1.1352 10 6 3.3399 -3.5070 0.9840 11 1 3.5738 -3.9124 -0.0005 12 7 3.8598 -4.4076 2.0159 13 6 5.0614 -5.0928 1.8056 14 6 5.5486 -5.9412 2.7822 15 6 6.7489 -6.6255 2.5707 16 7 7.4678 -7.5034 3.3165 17 6 8.5350 -7.8621 2.6640 18 7 8.5747 -7.2406 1.4554 19 1 9.2652 -7.3379 0.7811 20 6 7.4472 -6.4434 1.3662 21 6 6.9452 -5.5874 0.3930 22 9 7.6169 -5.4124 -0.7660 23 6 5.7567 -4.9209 0.6105 24 6 3.9907 -2.1311 1.1350 25 6 3.5170 -1.2166 0.0000 26 1 -0.4850 0.8401 0.0004 27 1 1.4198 -3.0193 -0.9537 28 1 0.2036 -2.3409 0.1602 29 1 1.5898 -2.9196 2.0941 30 1 1.3706 -4.3733 1.0901 31 1 3.3710 -4.5288 2.8450 32 1 5.0039 -6.0746 3.7051 33 1 9.2801 -8.5534 3.0288 34 1 5.3654 -4.2594 -0.1482 35 1 3.7064 -1.6977 2.0939 36 1 5.0748 -2.2348 1.0898 37 1 3.8982 -0.2079 0.1591 38 1 3.8800 -1.5988 -0.9541 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167845702.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:51 Heat of formation + Delta-G solvation = 13.118846 kcal Electronic energy + Delta-G solvation = -22438.837877 eV Core-core repulsion = 19002.394717 eV Total energy + Delta-G solvation = -3436.443160 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.129 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -48.91046 -41.97815 -38.66231 -36.50856 -33.67342 -32.94834 -31.65809 -29.81278 -29.50632 -28.47803 -26.46587 -23.43845 -22.58456 -21.75747 -21.48000 -20.91467 -19.52055 -18.53235 -17.74930 -16.66889 -15.94850 -15.86652 -15.62942 -15.35303 -14.77174 -14.68746 -14.49628 -14.03571 -13.46649 -13.25173 -12.91724 -12.62197 -12.37852 -12.20921 -11.98493 -11.71828 -11.47305 -11.04930 -10.82448 -10.66713 -10.61083 -10.22839 -10.18166 -10.06685 -9.83283 -9.35935 -9.00973 -8.69775 -8.51759 -8.18226 -7.03051 -6.14915 -4.06320 0.84864 1.62646 2.72039 2.79765 3.26397 3.33615 3.34737 3.62275 3.86779 4.23714 4.32633 4.35049 4.64265 5.10790 5.20729 5.26031 5.33116 5.44047 5.56593 5.80552 5.90005 6.09910 6.18579 6.25246 6.41562 6.50967 6.56403 6.59821 6.67512 6.81039 6.85783 6.97125 7.02972 7.20986 7.34441 7.55971 7.64323 7.67557 7.77344 7.78582 8.07093 8.32459 8.91243 9.49783 10.94678 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.030133 B = 0.003722 C = 0.003534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.005182 B = 7521.750700 C = 7920.138763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.077 3.923 3 Si 0.890 3.110 4 H -0.274 1.274 5 H -0.292 1.292 6 H -0.274 1.274 7 C -0.492 4.492 8 C 0.013 3.987 9 C -0.114 4.114 10 C 0.158 3.842 11 H 0.069 0.931 12 N -0.733 5.733 13 C 0.251 3.749 14 C -0.182 4.182 15 C 0.124 3.876 16 N -0.507 5.507 17 C 0.268 3.732 18 N -0.598 5.598 19 H 0.422 0.578 20 C -0.047 4.047 21 C 0.147 3.853 22 F -0.142 7.142 23 C -0.196 4.196 24 C -0.120 4.120 25 C -0.010 4.010 26 H 0.265 0.735 27 H 0.006 0.994 28 H 0.061 0.939 29 H 0.055 0.945 30 H 0.037 0.963 31 H 0.399 0.601 32 H 0.131 0.869 33 H 0.215 0.785 34 H 0.148 0.852 35 H 0.055 0.945 36 H 0.036 0.964 37 H 0.025 0.975 38 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.551 -13.038 3.221 19.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.126 4.126 3 Si 0.719 3.281 4 H -0.200 1.200 5 H -0.218 1.218 6 H -0.200 1.200 7 C -0.511 4.511 8 C -0.025 4.025 9 C -0.152 4.152 10 C 0.054 3.946 11 H 0.087 0.913 12 N -0.359 5.359 13 C 0.142 3.858 14 C -0.209 4.209 15 C 0.005 3.995 16 N -0.229 5.229 17 C -0.019 4.019 18 N -0.211 5.211 19 H 0.260 0.740 20 C -0.156 4.156 21 C 0.124 3.876 22 F -0.121 7.121 23 C -0.219 4.219 24 C -0.159 4.159 25 C -0.048 4.048 26 H 0.075 0.925 27 H 0.024 0.976 28 H 0.079 0.921 29 H 0.074 0.926 30 H 0.055 0.945 31 H 0.234 0.766 32 H 0.148 0.852 33 H 0.231 0.769 34 H 0.166 0.834 35 H 0.074 0.926 36 H 0.054 0.946 37 H 0.044 0.956 38 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges 14.011 -13.011 3.827 19.500 hybrid contribution 1.111 1.131 -0.952 1.850 sum 15.123 -11.880 2.875 19.445 Atomic orbital electron populations 1.69818 1.06159 1.27147 1.49535 1.24837 0.94724 0.98576 0.94423 0.86660 0.79412 0.83005 0.79024 1.19994 1.21846 1.19976 1.20011 0.89257 0.91519 1.50269 1.19339 0.98799 0.92716 0.91616 1.21905 0.92226 0.98706 1.02376 1.21056 0.95015 0.88747 0.89776 0.91257 1.45278 1.21574 1.47637 1.21456 1.17136 0.86798 0.90236 0.91596 1.19418 0.97118 1.03383 1.01023 1.18443 0.95124 0.96549 0.89385 1.70485 1.05651 1.15851 1.30869 1.25324 0.97467 0.97039 0.82047 1.43012 1.21178 1.38662 1.18275 0.73977 1.18612 0.93479 1.03623 0.99884 1.16197 0.92225 0.98219 0.80933 1.91473 1.79563 1.94348 1.46671 1.20566 0.95444 1.06086 0.99795 1.22044 0.97071 0.95647 1.01183 1.19614 0.96714 0.94715 0.93721 0.92461 0.97600 0.92083 0.92650 0.94454 0.76643 0.85151 0.76858 0.83424 0.92634 0.94555 0.95610 0.96332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.01 12.73 55.43 0.71 -24.30 16 2 C 0.08 2.06 5.46 -17.82 -0.10 1.97 16 3 Si 0.89 20.93 26.80 -169.99 -4.56 16.37 16 4 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 7 C -0.49 -12.45 5.51 -98.93 -0.55 -12.99 16 8 C 0.01 0.31 5.97 -27.48 -0.16 0.15 16 9 C -0.11 -2.22 5.40 -26.63 -0.14 -2.36 16 10 C 0.16 2.80 2.05 -67.98 -0.14 2.66 16 11 H 0.07 1.25 6.46 -51.93 -0.34 0.92 16 12 N -0.73 -11.09 5.25 -52.21 -0.27 -11.36 16 13 C 0.25 3.75 6.62 -83.76 -0.55 3.20 16 14 C -0.18 -2.64 9.93 -39.01 -0.39 -3.02 16 15 C 0.12 1.81 7.22 -84.72 -0.61 1.20 16 16 N -0.51 -6.79 11.27 -12.08 -0.14 -6.93 16 17 C 0.27 2.44 12.97 -89.84 -1.16 1.28 16 18 N -0.60 -5.74 6.24 -11.69 -0.07 -5.81 16 19 H 0.42 2.65 8.96 -40.82 -0.37 2.28 16 20 C -0.05 -0.64 7.28 -83.81 -0.61 -1.25 16 21 C 0.15 2.11 7.31 -39.40 -0.29 1.82 16 22 F -0.14 -1.99 17.27 2.25 0.04 -1.95 16 23 C -0.20 -2.95 8.77 -39.26 -0.34 -3.29 16 24 C -0.12 -2.33 5.43 -26.62 -0.14 -2.48 16 25 C -0.01 -0.21 5.59 -27.47 -0.15 -0.37 16 26 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 27 H 0.01 0.13 8.14 -51.93 -0.42 -0.29 16 28 H 0.06 1.59 7.07 -51.93 -0.37 1.23 16 29 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 30 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.40 5.42 8.61 -40.82 -0.35 5.07 16 32 H 0.13 1.72 8.06 -52.49 -0.42 1.30 16 33 H 0.22 0.79 8.06 -52.49 -0.42 0.37 16 34 H 0.15 2.27 6.12 -52.49 -0.32 1.95 16 35 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 36 H 0.04 0.65 7.73 -51.93 -0.40 0.25 16 37 H 0.03 0.58 5.17 -51.93 -0.27 0.31 16 38 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 LS Contribution 311.67 15.07 4.70 4.70 Total: -1.00 -29.92 311.67 -9.45 -39.37 By element: Atomic # 1 Polarization: 7.91 SS G_CDS: -4.51 Total: 3.41 kcal Atomic # 6 Polarization: -8.15 SS G_CDS: -5.35 Total: -13.50 kcal Atomic # 7 Polarization: -48.63 SS G_CDS: 0.22 Total: -48.40 kcal Atomic # 9 Polarization: -1.99 SS G_CDS: 0.04 Total: -1.95 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -4.56 Total: 16.37 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -29.92 -9.45 -39.37 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167845702.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.493 kcal (2) G-P(sol) polarization free energy of solvation -29.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.375 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds