Wall clock time and date at job start Tue Mar 31 2020 06:23:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86798 * 120.00001 * 2 1 4 4 H 1.48503 * 109.46900 * 239.99705 * 3 2 1 5 5 H 1.48497 * 109.47221 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47319 * 120.00186 * 3 2 1 7 7 C 1.37879 * 119.99722 * 179.97438 * 2 1 3 8 8 C 1.51267 * 120.85036 * 0.02562 * 7 2 1 9 9 C 1.53236 * 108.53325 * 231.32227 * 8 7 2 10 10 C 1.52955 * 109.40289 * 305.37023 * 9 8 7 11 11 H 1.09003 * 109.41439 * 303.49240 * 10 9 8 12 12 N 1.46498 * 109.41143 * 183.70673 * 10 9 8 13 13 C 1.39915 * 120.00070 * 155.00004 * 12 10 9 14 14 C 1.38231 * 119.81077 * 179.97438 * 13 12 10 15 15 C 1.39772 * 119.75383 * 179.97438 * 14 13 12 16 16 N 1.35785 * 133.47984 * 179.97438 * 15 14 13 17 17 C 1.30127 * 109.69337 * 180.02562 * 16 15 14 18 18 N 1.35962 * 110.10566 * 359.97438 * 17 16 15 19 19 H 0.97002 * 126.35980 * 180.02562 * 18 17 16 20 20 C 1.38370 * 107.26704 * 0.02562 * 18 17 16 21 21 C 1.38985 * 133.96983 * 179.97438 * 20 18 17 22 22 F 1.35102 * 120.05725 * 0.02562 * 21 20 18 23 23 C 1.37988 * 119.88771 * 179.76298 * 21 20 18 24 24 C 1.52958 * 109.81879 * 63.59902 * 10 9 8 25 25 C 1.51264 * 120.84977 * 179.97438 * 7 2 1 26 26 H 0.96999 * 119.99814 * 359.97438 * 1 2 3 27 27 H 1.08991 * 109.63053 * 111.60583 * 8 7 2 28 28 H 1.09003 * 109.62740 * 351.03061 * 8 7 2 29 29 H 1.09000 * 109.47925 * 65.35303 * 9 8 7 30 30 H 1.09001 * 109.48132 * 185.39228 * 9 8 7 31 31 H 0.97005 * 120.00159 * 334.99833 * 12 10 9 32 32 H 1.07998 * 120.11841 * 359.97438 * 14 13 12 33 33 H 1.07995 * 124.95164 * 180.02562 * 17 16 15 34 34 H 1.07997 * 119.82067 * 180.27048 * 23 21 20 35 35 H 1.09000 * 109.48176 * 56.37933 * 24 10 9 36 36 H 1.08998 * 109.48079 * 176.42178 * 24 10 9 37 37 H 1.09004 * 109.62227 * 8.96406 * 25 7 2 38 38 H 1.09004 * 109.78642 * 248.48608 * 25 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 6 1.2676 -2.5152 0.0005 9 6 1.8229 -3.3826 1.1352 10 6 3.3399 -3.5070 0.9840 11 1 3.5738 -3.9124 -0.0005 12 7 3.8598 -4.4076 2.0159 13 6 5.0614 -5.0928 1.8056 14 6 5.5486 -5.9412 2.7822 15 6 6.7489 -6.6255 2.5707 16 7 7.4678 -7.5034 3.3165 17 6 8.5350 -7.8621 2.6640 18 7 8.5747 -7.2406 1.4554 19 1 9.2652 -7.3379 0.7811 20 6 7.4472 -6.4434 1.3662 21 6 6.9452 -5.5874 0.3930 22 9 7.6169 -5.4124 -0.7660 23 6 5.7567 -4.9209 0.6105 24 6 3.9907 -2.1311 1.1350 25 6 3.5170 -1.2166 0.0000 26 1 -0.4850 0.8401 0.0004 27 1 1.4198 -3.0193 -0.9537 28 1 0.2036 -2.3409 0.1602 29 1 1.5898 -2.9196 2.0941 30 1 1.3706 -4.3733 1.0901 31 1 3.3710 -4.5288 2.8450 32 1 5.0039 -6.0746 3.7051 33 1 9.2801 -8.5534 3.0288 34 1 5.3654 -4.2594 -0.1482 35 1 3.7064 -1.6977 2.0939 36 1 5.0748 -2.2348 1.0898 37 1 3.8982 -0.2079 0.1591 38 1 3.8800 -1.5988 -0.9541 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167845702.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:50 Heat of formation + Delta-G solvation = -4.488060 kcal Electronic energy + Delta-G solvation = -22439.601370 eV Core-core repulsion = 19002.394717 eV Total energy + Delta-G solvation = -3437.206653 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.129 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -49.99846 -42.89431 -39.95548 -37.93080 -35.18972 -33.87172 -33.32170 -31.50600 -30.61782 -29.80731 -27.92636 -24.48010 -24.09227 -23.15817 -22.84850 -22.07383 -21.09181 -19.48481 -18.86772 -18.14442 -17.27908 -16.98260 -16.72904 -16.48464 -16.39953 -16.00661 -15.64226 -15.13718 -14.90437 -14.62300 -14.43634 -14.24781 -13.88760 -13.52659 -13.43639 -13.10417 -12.86955 -12.72643 -12.55177 -12.40025 -11.94645 -11.69732 -11.57492 -11.53602 -11.12591 -10.89637 -10.70393 -10.54157 -10.30448 -9.22222 -8.17904 -8.15650 -6.10215 -0.15745 0.56129 1.39601 1.41159 1.48406 1.84322 1.99534 2.40849 2.44440 2.79777 3.11816 3.19721 3.45171 3.82543 4.05149 4.11520 4.20314 4.23921 4.39323 4.52495 4.58748 4.74489 4.83617 4.92875 4.99385 5.10250 5.11318 5.18790 5.24040 5.24556 5.34864 5.46600 5.60083 5.63037 5.67912 5.78045 5.85967 6.35294 6.40597 6.51378 6.88856 6.94421 6.96838 7.47860 8.94062 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.030133 B = 0.003722 C = 0.003534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.005182 B = 7521.750700 C = 7920.138763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.024 3.976 3 Si 0.939 3.061 4 H -0.268 1.268 5 H -0.295 1.295 6 H -0.267 1.267 7 C -0.498 4.498 8 C 0.009 3.991 9 C -0.102 4.102 10 C 0.173 3.827 11 H 0.069 0.931 12 N -0.730 5.730 13 C 0.244 3.756 14 C -0.184 4.184 15 C 0.107 3.893 16 N -0.548 5.548 17 C 0.297 3.703 18 N -0.588 5.588 19 H 0.439 0.561 20 C -0.056 4.056 21 C 0.144 3.856 22 F -0.142 7.142 23 C -0.212 4.212 24 C -0.113 4.113 25 C -0.013 4.013 26 H 0.262 0.738 27 H 0.003 0.997 28 H 0.028 0.972 29 H 0.048 0.952 30 H 0.056 0.944 31 H 0.407 0.593 32 H 0.138 0.862 33 H 0.270 0.730 34 H 0.141 0.859 35 H 0.046 0.954 36 H 0.052 0.948 37 H 0.024 0.976 38 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.551 -14.727 3.913 23.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.175 4.175 3 Si 0.766 3.234 4 H -0.193 1.193 5 H -0.222 1.222 6 H -0.192 1.192 7 C -0.518 4.518 8 C -0.029 4.029 9 C -0.141 4.141 10 C 0.068 3.932 11 H 0.087 0.913 12 N -0.358 5.358 13 C 0.137 3.863 14 C -0.211 4.211 15 C -0.012 4.012 16 N -0.270 5.270 17 C 0.010 3.990 18 N -0.202 5.202 19 H 0.281 0.719 20 C -0.166 4.166 21 C 0.122 3.878 22 F -0.121 7.121 23 C -0.235 4.235 24 C -0.152 4.152 25 C -0.051 4.051 26 H 0.072 0.928 27 H 0.022 0.978 28 H 0.047 0.953 29 H 0.067 0.933 30 H 0.074 0.926 31 H 0.243 0.757 32 H 0.156 0.844 33 H 0.286 0.714 34 H 0.159 0.841 35 H 0.065 0.935 36 H 0.071 0.929 37 H 0.042 0.958 38 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 17.069 -14.727 4.509 22.990 hybrid contribution 0.314 1.477 -1.169 1.909 sum 17.382 -13.251 3.341 22.111 Atomic orbital electron populations 1.69953 1.07558 1.27472 1.52073 1.25556 0.95302 1.01585 0.95016 0.85856 0.78357 0.79758 0.79380 1.19282 1.22205 1.19215 1.20639 0.91116 0.91912 1.48093 1.19298 0.97118 0.93331 0.93146 1.21682 0.93700 0.98642 1.00046 1.20662 0.93398 0.88522 0.90618 0.91313 1.44925 1.22061 1.47605 1.21194 1.17106 0.86654 0.90679 0.91863 1.19534 0.97385 1.03070 1.01106 1.18696 0.95423 0.96960 0.90096 1.70507 1.07414 1.17014 1.32084 1.26429 0.96582 0.95298 0.80696 1.43082 1.20450 1.37607 1.19047 0.71944 1.18654 0.94718 1.03908 0.99286 1.16213 0.92118 0.98366 0.81121 1.91469 1.79500 1.94375 1.46713 1.20549 0.96188 1.06882 0.99908 1.21920 0.98119 0.95817 0.99314 1.19649 0.94702 0.95538 0.95251 0.92835 0.97831 0.95277 0.93344 0.92574 0.75713 0.84421 0.71424 0.84121 0.93493 0.92910 0.95773 0.95690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.07 12.73 21.45 0.27 -53.79 16 2 C 0.02 1.29 5.46 84.65 0.46 1.75 16 3 Si 0.94 43.26 26.80 68.60 1.84 45.10 16 4 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 5 H -0.30 -13.63 7.11 99.48 0.71 -12.92 16 6 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 7 C -0.50 -25.47 5.51 -16.17 -0.09 -25.56 16 8 C 0.01 0.44 5.97 30.11 0.18 0.62 16 9 C -0.10 -3.96 5.40 30.66 0.17 -3.80 16 10 C 0.17 5.96 2.05 44.96 0.09 6.05 16 11 H 0.07 2.42 6.46 -2.39 -0.02 2.40 16 12 N -0.73 -21.14 5.25 -319.09 -1.68 -22.82 16 13 C 0.24 7.00 6.62 38.11 0.25 7.26 16 14 C -0.18 -5.08 9.93 22.64 0.22 -4.85 16 15 C 0.11 2.94 7.22 39.43 0.28 3.22 16 16 N -0.55 -13.13 11.27 -192.12 -2.17 -15.30 16 17 C 0.30 4.15 12.97 180.07 2.34 6.48 16 18 N -0.59 -9.19 6.24 -190.89 -1.19 -10.38 16 19 H 0.44 3.82 8.96 -92.71 -0.83 2.99 16 20 C -0.06 -1.38 7.28 38.82 0.28 -1.10 16 21 C 0.14 3.93 7.31 22.39 0.16 4.09 16 22 F -0.14 -3.76 17.27 44.97 0.78 -2.98 16 23 C -0.21 -6.17 8.77 22.48 0.20 -5.97 16 24 C -0.11 -4.23 5.43 30.67 0.17 -4.07 16 25 C -0.01 -0.58 5.59 30.11 0.17 -0.41 16 26 H 0.26 14.62 8.31 -92.71 -0.77 13.85 16 27 H 0.00 0.16 8.14 -2.39 -0.02 0.14 16 28 H 0.03 1.56 7.07 -2.39 -0.02 1.55 16 29 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 30 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 31 H 0.41 10.50 8.61 -92.70 -0.80 9.70 16 32 H 0.14 3.46 8.06 -2.91 -0.02 3.44 16 33 H 0.27 0.37 8.06 -2.91 -0.02 0.34 16 34 H 0.14 4.22 6.12 -2.91 -0.02 4.20 16 35 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 36 H 0.05 1.82 7.73 -2.39 -0.02 1.80 16 37 H 0.02 1.05 5.17 -2.38 -0.01 1.04 16 38 H 0.02 1.06 8.14 -2.38 -0.02 1.04 16 Total: -1.00 -65.83 311.67 2.24 -63.60 By element: Atomic # 1 Polarization: 13.37 SS G_CDS: -0.50 Total: 12.87 kcal Atomic # 6 Polarization: -21.18 SS G_CDS: 4.89 Total: -16.30 kcal Atomic # 7 Polarization: -97.53 SS G_CDS: -4.76 Total: -102.29 kcal Atomic # 9 Polarization: -3.76 SS G_CDS: 0.78 Total: -2.98 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 1.84 Total: 45.10 kcal Total: -65.83 2.24 -63.60 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167845702.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.107 kcal (2) G-P(sol) polarization free energy of solvation -65.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds