Wall clock time and date at job start Tue Mar 31 2020 06:08:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08994 * 109.47081 * 2 1 4 4 C 1.53002 * 109.46965 * 119.99885 * 2 1 3 5 5 C 1.52998 * 109.46837 * 185.00004 * 4 2 1 6 6 C 1.50700 * 109.47265 * 180.02562 * 5 4 2 7 7 H 1.08005 * 119.99602 * 359.97438 * 6 5 4 8 8 C 1.37877 * 120.00347 * 180.02562 * 6 5 4 9 9 N 1.31519 * 120.00182 * 179.97438 * 8 6 5 10 10 Si 1.86796 * 119.99880 * 359.97438 * 8 6 5 11 11 H 1.48500 * 109.47020 * 90.00510 * 10 8 6 12 12 H 1.48504 * 109.47356 * 210.00384 * 10 8 6 13 13 H 1.48501 * 109.47264 * 330.00445 * 10 8 6 14 14 N 1.46898 * 109.47140 * 239.99594 * 2 1 3 15 15 C 1.46906 * 110.99888 * 84.99977 * 14 2 1 16 16 C 1.50699 * 109.47140 * 180.02562 * 15 14 2 17 17 C 1.31819 * 124.30089 * 90.00268 * 16 15 14 18 18 C 1.45387 * 114.89773 * 179.97438 * 17 16 15 19 19 C 1.41174 * 129.34335 * 180.02562 * 18 17 16 20 20 C 1.36102 * 120.45513 * 179.97438 * 19 18 17 21 21 C 1.38844 * 120.58907 * 359.97438 * 20 19 18 22 22 C 1.37461 * 120.19530 * 359.97438 * 21 20 19 23 23 C 1.39738 * 111.82857 * 359.97438 * 18 17 16 24 24 S 1.75299 * 124.29923 * 269.70094 * 16 15 14 25 25 H 1.08994 * 109.46950 * 60.00641 * 1 2 3 26 26 H 1.09006 * 109.46704 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47119 * 299.99707 * 1 2 3 28 28 H 1.08999 * 109.47075 * 304.99534 * 4 2 1 29 29 H 1.08997 * 109.47201 * 65.00055 * 4 2 1 30 30 H 1.08999 * 109.47427 * 299.99661 * 5 4 2 31 31 H 1.09002 * 109.47632 * 60.00151 * 5 4 2 32 32 H 0.97000 * 119.99918 * 179.97438 * 9 8 6 33 33 H 1.00902 * 111.00533 * 321.04383 * 14 2 1 34 34 H 1.09000 * 109.47033 * 300.00113 * 15 14 2 35 35 H 1.09001 * 109.46544 * 60.00058 * 15 14 2 36 36 H 1.08007 * 122.55566 * 359.94863 * 17 16 15 37 37 H 1.07994 * 119.77450 * 359.97122 * 19 18 17 38 38 H 1.07996 * 119.70098 * 179.97438 * 20 19 18 39 39 H 1.08009 * 119.89908 * 179.97438 * 21 20 19 40 40 H 1.08001 * 119.91587 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5648 -0.6133 1.3137 6 6 4.0672 -1.3242 2.5438 7 1 3.3687 -1.8046 3.2130 8 6 5.4185 -1.3604 2.8156 9 7 5.8569 -1.9804 3.8894 10 14 6.6264 -0.5289 1.6586 11 1 6.8311 0.8788 2.0848 12 1 7.9238 -1.2507 1.6951 13 1 6.0849 -0.5538 0.2761 14 7 2.0197 -0.6926 -1.1994 15 6 2.0824 0.2225 -2.3469 16 6 2.5873 -0.5220 -3.5560 17 6 1.8132 -1.1515 -4.4174 18 6 2.5169 -1.8023 -5.5107 19 6 1.9979 -2.5506 -6.5895 20 6 2.8320 -3.0851 -7.5227 21 6 4.2054 -2.9033 -7.4298 22 6 4.7380 -2.1782 -6.3905 23 6 3.8994 -1.6209 -5.4198 24 16 4.2780 -0.6544 -3.9997 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.6054 -0.2617 2.1370 29 1 1.7516 -1.7715 1.2057 30 1 3.9994 -1.0728 0.4260 31 1 3.8532 0.4370 1.3574 32 1 6.8076 -2.0062 4.0804 33 1 1.4496 -1.4981 -1.4100 34 1 1.0870 0.6162 -2.5525 35 1 2.7589 1.0461 -2.1182 36 1 0.7381 -1.1820 -4.3185 37 1 0.9318 -2.7000 -6.6748 38 1 2.4219 -3.6558 -8.3427 39 1 4.8570 -3.3328 -8.1764 40 1 5.8070 -2.0399 -6.3224 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172479312.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:12 Heat of formation + Delta-G solvation = 28.762649 kcal Electronic energy + Delta-G solvation = -19644.059798 eV Core-core repulsion = 16742.215429 eV Total energy + Delta-G solvation = -2901.844369 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 289.120 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.63212 -37.68828 -35.53240 -33.20586 -31.83824 -31.15360 -29.95026 -28.61152 -25.60944 -24.88528 -23.52923 -22.04024 -21.09074 -20.23241 -19.84607 -17.99148 -16.56254 -16.16834 -15.51932 -15.48089 -15.31802 -14.53553 -14.11095 -14.07235 -13.81534 -13.66407 -13.29302 -12.86731 -12.67228 -12.43317 -12.39420 -12.20037 -11.69139 -11.48078 -11.34599 -11.28756 -11.21049 -10.81080 -10.59672 -10.50128 -9.80964 -9.79416 -9.62458 -9.47088 -8.99432 -8.59338 -8.40711 -8.10118 -7.76845 -5.92189 -3.88170 0.60287 1.08214 1.48083 2.00155 2.14783 3.40645 3.47960 3.55843 3.56989 4.27004 4.54791 4.58451 4.64254 4.73769 4.96041 5.09534 5.12566 5.21727 5.27447 5.42115 5.43728 5.48558 5.55546 5.59883 5.64334 5.80009 5.89078 5.97048 6.13797 6.17055 6.24519 6.26976 6.35346 6.50973 6.67843 6.70874 7.09728 7.24512 7.52462 7.60134 7.76245 7.96692 8.67897 9.13881 9.72206 11.21687 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.016122 B = 0.004133 C = 0.003505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1736.293020 B = 6772.502535 C = 7987.526926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.081 3.919 3 H 0.073 0.927 4 C -0.089 4.089 5 C -0.007 4.007 6 C -0.516 4.516 7 H 0.068 0.932 8 C 0.064 3.936 9 N -0.910 5.910 10 Si 0.877 3.123 11 H -0.280 1.280 12 H -0.290 1.290 13 H -0.260 1.260 14 N -0.669 5.669 15 C 0.123 3.877 16 C -0.138 4.138 17 C -0.129 4.129 18 C -0.071 4.071 19 C -0.082 4.082 20 C -0.123 4.123 21 C -0.109 4.109 22 C -0.082 4.082 23 C -0.146 4.146 24 S 0.119 5.881 25 H 0.044 0.956 26 H 0.056 0.944 27 H 0.061 0.939 28 H 0.054 0.946 29 H 0.053 0.947 30 H 0.032 0.968 31 H 0.002 0.998 32 H 0.260 0.740 33 H 0.341 0.659 34 H 0.048 0.952 35 H 0.084 0.916 36 H 0.141 0.859 37 H 0.124 0.876 38 H 0.125 0.875 39 H 0.128 0.872 40 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.026 2.237 -23.796 25.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.028 4.028 3 H 0.092 0.908 4 C -0.127 4.127 5 C -0.044 4.044 6 C -0.554 4.554 7 H 0.086 0.914 8 C -0.136 4.136 9 N -0.550 5.550 10 Si 0.704 3.296 11 H -0.206 1.206 12 H -0.217 1.217 13 H -0.184 1.184 14 N -0.300 5.300 15 C -0.007 4.007 16 C -0.254 4.254 17 C -0.160 4.160 18 C -0.080 4.080 19 C -0.101 4.101 20 C -0.143 4.143 21 C -0.130 4.130 22 C -0.105 4.105 23 C -0.262 4.262 24 S 0.385 5.615 25 H 0.063 0.937 26 H 0.075 0.925 27 H 0.081 0.919 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.050 0.950 31 H 0.020 0.980 32 H 0.070 0.930 33 H 0.159 0.841 34 H 0.066 0.934 35 H 0.102 0.898 36 H 0.159 0.841 37 H 0.142 0.858 38 H 0.143 0.857 39 H 0.146 0.854 40 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -6.879 2.884 -22.798 23.987 hybrid contribution -1.478 -0.106 -1.248 1.938 sum -8.357 2.778 -24.047 25.608 Atomic orbital electron populations 1.22522 0.98118 1.01840 1.01472 1.21807 0.91433 0.98342 0.91237 0.90843 1.21451 0.99027 0.99094 0.93175 1.19480 0.91474 0.95812 0.97665 1.21253 0.92812 1.33935 1.07441 0.91426 1.25019 0.98443 0.95104 0.95034 1.69932 1.14405 1.44118 1.26505 0.86803 0.80482 0.79456 0.82820 1.20627 1.21661 1.18384 1.60577 1.58278 1.08877 1.02313 1.20488 0.99211 0.94417 0.86608 1.23905 0.96657 1.04221 1.00662 1.20783 1.00393 1.00443 0.94416 1.19247 0.91650 1.00482 0.96600 1.20684 0.99830 0.96630 0.93000 1.20665 0.93625 1.00670 0.99336 1.21012 0.95393 0.98753 0.97887 1.20500 0.98946 0.97704 0.93307 1.22905 0.96972 1.05318 1.01018 1.84530 1.05445 1.52749 1.18751 0.93656 0.92539 0.91946 0.92760 0.92785 0.95002 0.97992 0.92987 0.84062 0.93448 0.89778 0.84141 0.85815 0.85700 0.85442 0.85637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.21 9.16 37.16 0.34 -1.87 16 2 C 0.08 1.24 2.59 -67.71 -0.18 1.07 16 3 H 0.07 1.14 7.80 -51.93 -0.40 0.73 16 4 C -0.09 -1.77 4.83 -26.73 -0.13 -1.89 16 5 C -0.01 -0.17 3.93 -27.88 -0.11 -0.28 16 6 C -0.52 -15.23 9.66 -34.44 -0.33 -15.57 16 7 H 0.07 2.13 7.99 -52.48 -0.42 1.72 16 8 C 0.06 1.94 5.47 -17.82 -0.10 1.84 16 9 N -0.91 -29.04 13.96 55.43 0.77 -28.26 16 10 Si 0.88 22.72 27.47 -169.99 -4.67 18.06 16 11 H -0.28 -7.10 7.11 56.52 0.40 -6.70 16 12 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 13 H -0.26 -6.54 6.54 56.52 0.37 -6.17 16 14 N -0.67 -10.04 5.69 -107.99 -0.61 -10.65 16 15 C 0.12 1.58 5.92 -4.97 -0.03 1.55 16 16 C -0.14 -1.80 5.89 -36.20 -0.21 -2.01 16 17 C -0.13 -1.53 10.21 -38.63 -0.39 -1.92 16 18 C -0.07 -0.87 6.04 -105.38 -0.64 -1.51 16 19 C -0.08 -0.82 10.05 -39.24 -0.39 -1.21 16 20 C -0.12 -1.08 9.95 -40.12 -0.40 -1.48 16 21 C -0.11 -1.00 10.03 -39.64 -0.40 -1.40 16 22 C -0.08 -0.90 10.07 -39.26 -0.40 -1.30 16 23 C -0.15 -1.90 6.48 -38.41 -0.25 -2.15 16 24 S 0.12 1.66 23.20 -107.50 -2.49 -0.83 16 25 H 0.04 0.48 7.45 -51.93 -0.39 0.09 16 26 H 0.06 0.67 8.13 -51.93 -0.42 0.25 16 27 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 28 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 29 H 0.05 1.09 8.14 -51.93 -0.42 0.66 16 30 H 0.03 0.81 6.81 -51.93 -0.35 0.46 16 31 H 0.00 0.04 7.57 -51.93 -0.39 -0.35 16 32 H 0.26 7.80 8.31 -40.82 -0.34 7.46 16 33 H 0.34 4.73 8.46 -39.29 -0.33 4.40 16 34 H 0.05 0.51 7.43 -51.93 -0.39 0.13 16 35 H 0.08 1.12 8.06 -51.93 -0.42 0.70 16 36 H 0.14 1.34 8.06 -52.48 -0.42 0.92 16 37 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 38 H 0.13 0.77 8.06 -52.49 -0.42 0.34 16 39 H 0.13 0.82 8.06 -52.48 -0.42 0.40 16 40 H 0.13 1.18 8.06 -52.49 -0.42 0.76 16 LS Contribution 344.07 15.07 5.19 5.19 Total: -1.00 -32.91 344.07 -11.50 -44.40 By element: Atomic # 1 Polarization: 6.30 SS G_CDS: -6.07 Total: 0.23 kcal Atomic # 6 Polarization: -24.52 SS G_CDS: -3.61 Total: -28.13 kcal Atomic # 7 Polarization: -39.07 SS G_CDS: 0.16 Total: -38.91 kcal Atomic # 14 Polarization: 22.72 SS G_CDS: -4.67 Total: 18.06 kcal Atomic # 16 Polarization: 1.66 SS G_CDS: -2.49 Total: -0.83 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -32.91 -11.50 -44.40 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172479312.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.165 kcal (2) G-P(sol) polarization free energy of solvation -32.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.403 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds