Wall clock time and date at job start Tue Mar 31 2020 06:08:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08994 * 109.47081 * 2 1 4 4 C 1.53002 * 109.46965 * 119.99885 * 2 1 3 5 5 C 1.52998 * 109.46837 * 185.00004 * 4 2 1 6 6 C 1.50700 * 109.47265 * 180.02562 * 5 4 2 7 7 H 1.08005 * 119.99602 * 359.97438 * 6 5 4 8 8 C 1.37877 * 120.00347 * 180.02562 * 6 5 4 9 9 N 1.31519 * 120.00182 * 179.97438 * 8 6 5 10 10 Si 1.86796 * 119.99880 * 359.97438 * 8 6 5 11 11 H 1.48500 * 109.47020 * 90.00510 * 10 8 6 12 12 H 1.48504 * 109.47356 * 210.00384 * 10 8 6 13 13 H 1.48501 * 109.47264 * 330.00445 * 10 8 6 14 14 N 1.46898 * 109.47140 * 239.99594 * 2 1 3 15 15 C 1.46906 * 110.99888 * 84.99977 * 14 2 1 16 16 C 1.50699 * 109.47140 * 180.02562 * 15 14 2 17 17 C 1.31819 * 124.30089 * 90.00268 * 16 15 14 18 18 C 1.45387 * 114.89773 * 179.97438 * 17 16 15 19 19 C 1.41174 * 129.34335 * 180.02562 * 18 17 16 20 20 C 1.36102 * 120.45513 * 179.97438 * 19 18 17 21 21 C 1.38844 * 120.58907 * 359.97438 * 20 19 18 22 22 C 1.37461 * 120.19530 * 359.97438 * 21 20 19 23 23 C 1.39738 * 111.82857 * 359.97438 * 18 17 16 24 24 S 1.75299 * 124.29923 * 269.70094 * 16 15 14 25 25 H 1.08994 * 109.46950 * 60.00641 * 1 2 3 26 26 H 1.09006 * 109.46704 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47119 * 299.99707 * 1 2 3 28 28 H 1.08999 * 109.47075 * 304.99534 * 4 2 1 29 29 H 1.08997 * 109.47201 * 65.00055 * 4 2 1 30 30 H 1.08999 * 109.47427 * 299.99661 * 5 4 2 31 31 H 1.09002 * 109.47632 * 60.00151 * 5 4 2 32 32 H 0.97000 * 119.99918 * 179.97438 * 9 8 6 33 33 H 1.00902 * 111.00533 * 321.04383 * 14 2 1 34 34 H 1.09000 * 109.47033 * 300.00113 * 15 14 2 35 35 H 1.09001 * 109.46544 * 60.00058 * 15 14 2 36 36 H 1.08007 * 122.55566 * 359.94863 * 17 16 15 37 37 H 1.07994 * 119.77450 * 359.97122 * 19 18 17 38 38 H 1.07996 * 119.70098 * 179.97438 * 20 19 18 39 39 H 1.08009 * 119.89908 * 179.97438 * 21 20 19 40 40 H 1.08001 * 119.91587 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5648 -0.6133 1.3137 6 6 4.0672 -1.3242 2.5438 7 1 3.3687 -1.8046 3.2130 8 6 5.4185 -1.3604 2.8156 9 7 5.8569 -1.9804 3.8894 10 14 6.6264 -0.5289 1.6586 11 1 6.8311 0.8788 2.0848 12 1 7.9238 -1.2507 1.6951 13 1 6.0849 -0.5538 0.2761 14 7 2.0197 -0.6926 -1.1994 15 6 2.0824 0.2225 -2.3469 16 6 2.5873 -0.5220 -3.5560 17 6 1.8132 -1.1515 -4.4174 18 6 2.5169 -1.8023 -5.5107 19 6 1.9979 -2.5506 -6.5895 20 6 2.8320 -3.0851 -7.5227 21 6 4.2054 -2.9033 -7.4298 22 6 4.7380 -2.1782 -6.3905 23 6 3.8994 -1.6209 -5.4198 24 16 4.2780 -0.6544 -3.9997 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.6054 -0.2617 2.1370 29 1 1.7516 -1.7715 1.2057 30 1 3.9994 -1.0728 0.4260 31 1 3.8532 0.4370 1.3574 32 1 6.8076 -2.0062 4.0804 33 1 1.4496 -1.4981 -1.4100 34 1 1.0870 0.6162 -2.5525 35 1 2.7589 1.0461 -2.1182 36 1 0.7381 -1.1820 -4.3185 37 1 0.9318 -2.7000 -6.6748 38 1 2.4219 -3.6558 -8.3427 39 1 4.8570 -3.3328 -8.1764 40 1 5.8070 -2.0399 -6.3224 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172479312.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:11 Heat of formation + Delta-G solvation = 9.662762 kcal Electronic energy + Delta-G solvation = -19644.888032 eV Core-core repulsion = 16742.215429 eV Total energy + Delta-G solvation = -2902.672602 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 289.120 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.42837 -38.84399 -36.55543 -35.14091 -33.37463 -31.91430 -31.46991 -29.61609 -27.14818 -26.12884 -24.34997 -22.94251 -22.73653 -21.46894 -21.00861 -18.94155 -18.73594 -17.02884 -16.63343 -16.35165 -16.34717 -16.22380 -15.48949 -15.08720 -14.77729 -14.70613 -14.52179 -14.26309 -14.18085 -13.82632 -13.45428 -13.29203 -13.15812 -12.89126 -12.63003 -12.34776 -12.11799 -12.09986 -11.96581 -11.66416 -11.51278 -11.48845 -11.35728 -11.11668 -10.72800 -10.62278 -9.45987 -9.19627 -8.70650 -8.27545 -6.28925 -0.23358 0.30547 0.56036 1.08923 1.30048 1.33140 1.36796 1.51423 2.37962 2.78850 3.08971 3.28139 3.60875 3.86358 4.00005 4.07118 4.13927 4.24962 4.37019 4.40512 4.45554 4.48659 4.59787 4.74721 4.77900 4.84487 4.92039 4.97953 5.02410 5.06686 5.08559 5.25474 5.37702 5.39456 5.50710 5.55217 5.59724 5.69520 5.77893 5.96913 6.16634 6.33958 6.53786 6.79891 7.35476 8.89648 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.016122 B = 0.004133 C = 0.003505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1736.293020 B = 6772.502535 C = 7987.526926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.091 3.909 3 H 0.074 0.926 4 C -0.085 4.085 5 C 0.001 3.999 6 C -0.528 4.528 7 H 0.030 0.970 8 C 0.004 3.996 9 N -0.955 5.955 10 Si 0.946 3.054 11 H -0.266 1.266 12 H -0.285 1.285 13 H -0.251 1.251 14 N -0.690 5.690 15 C 0.131 3.869 16 C -0.151 4.151 17 C -0.116 4.116 18 C -0.095 4.095 19 C -0.085 4.085 20 C -0.121 4.121 21 C -0.102 4.102 22 C -0.105 4.105 23 C -0.159 4.159 24 S 0.052 5.948 25 H 0.069 0.931 26 H 0.059 0.941 27 H 0.064 0.936 28 H 0.051 0.949 29 H 0.043 0.957 30 H 0.024 0.976 31 H 0.004 0.996 32 H 0.264 0.736 33 H 0.346 0.654 34 H 0.075 0.925 35 H 0.073 0.927 36 H 0.167 0.833 37 H 0.149 0.851 38 H 0.159 0.841 39 H 0.157 0.843 40 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.430 2.503 -27.045 29.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.018 4.018 3 H 0.092 0.908 4 C -0.123 4.123 5 C -0.036 4.036 6 C -0.566 4.566 7 H 0.048 0.952 8 C -0.192 4.192 9 N -0.596 5.596 10 Si 0.770 3.230 11 H -0.191 1.191 12 H -0.211 1.211 13 H -0.174 1.174 14 N -0.323 5.323 15 C 0.001 3.999 16 C -0.267 4.267 17 C -0.147 4.147 18 C -0.103 4.103 19 C -0.105 4.105 20 C -0.141 4.141 21 C -0.123 4.123 22 C -0.127 4.127 23 C -0.275 4.275 24 S 0.317 5.683 25 H 0.088 0.912 26 H 0.078 0.922 27 H 0.083 0.917 28 H 0.070 0.930 29 H 0.062 0.938 30 H 0.042 0.958 31 H 0.023 0.977 32 H 0.073 0.927 33 H 0.166 0.834 34 H 0.093 0.907 35 H 0.091 0.909 36 H 0.184 0.816 37 H 0.167 0.833 38 H 0.176 0.824 39 H 0.175 0.825 40 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -8.309 3.153 -26.057 27.531 hybrid contribution -1.080 -0.323 -0.295 1.165 sum -9.389 2.831 -26.352 28.118 Atomic orbital electron populations 1.22390 0.95186 1.02509 1.02795 1.21557 0.93633 0.97332 0.89321 0.90805 1.21341 0.95726 0.99297 0.95907 1.19364 0.94806 0.94820 0.94640 1.21663 0.92550 1.33821 1.08586 0.95204 1.25965 1.00637 0.95884 0.96752 1.70078 1.15105 1.45877 1.28590 0.85702 0.77765 0.78798 0.80698 1.19150 1.21094 1.17422 1.60434 1.58997 1.09779 1.03052 1.20431 1.00304 0.93558 0.85628 1.23866 0.95465 1.05864 1.01497 1.21090 1.01475 0.98685 0.93450 1.19585 0.91453 1.01540 0.97715 1.21062 1.01449 0.95760 0.92229 1.21128 0.93372 0.99902 0.99692 1.21443 0.96301 0.97197 0.97359 1.20787 0.99424 0.98623 0.93879 1.23032 0.97888 1.05758 1.00775 1.84593 1.07972 1.54653 1.21075 0.91240 0.92221 0.91683 0.93047 0.93773 0.95799 0.97725 0.92692 0.83446 0.90705 0.90851 0.81568 0.83306 0.82374 0.82520 0.85057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.69 9.16 71.98 0.66 -3.03 16 2 C 0.09 2.66 2.59 44.92 0.12 2.77 16 3 H 0.07 2.16 7.80 -2.39 -0.02 2.14 16 4 C -0.08 -3.34 4.83 30.59 0.15 -3.19 16 5 C 0.00 0.06 3.93 29.85 0.12 0.17 16 6 C -0.53 -32.12 9.66 25.60 0.25 -31.87 16 7 H 0.03 1.97 7.99 -2.91 -0.02 1.95 16 8 C 0.00 0.22 5.47 84.65 0.46 0.68 16 9 N -0.95 -62.59 13.96 21.45 0.30 -62.29 16 10 Si 0.95 47.54 27.47 68.60 1.88 49.43 16 11 H -0.27 -12.73 7.11 99.48 0.71 -12.03 16 12 H -0.29 -13.99 7.11 99.48 0.71 -13.28 16 13 H -0.25 -12.13 6.54 99.48 0.65 -11.48 16 14 N -0.69 -19.82 5.69 -495.57 -2.82 -22.64 16 15 C 0.13 3.14 5.92 85.56 0.51 3.64 16 16 C -0.15 -3.81 5.89 24.90 0.15 -3.66 16 17 C -0.12 -2.52 10.21 23.33 0.24 -2.28 16 18 C -0.09 -2.16 6.04 -20.36 -0.12 -2.28 16 19 C -0.09 -1.44 10.05 22.49 0.23 -1.21 16 20 C -0.12 -1.70 9.95 21.92 0.22 -1.48 16 21 C -0.10 -1.59 10.03 22.23 0.22 -1.36 16 22 C -0.10 -2.20 10.07 22.48 0.23 -1.97 16 23 C -0.16 -4.06 6.48 23.03 0.15 -3.91 16 24 S 0.05 1.48 23.20 -56.49 -1.31 0.17 16 25 H 0.07 1.20 7.45 -2.39 -0.02 1.19 16 26 H 0.06 1.27 8.13 -2.38 -0.02 1.25 16 27 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 28 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 29 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 30 H 0.02 1.22 6.81 -2.39 -0.02 1.20 16 31 H 0.00 0.22 7.57 -2.39 -0.02 0.20 16 32 H 0.26 16.16 8.31 -92.71 -0.77 15.39 16 33 H 0.35 9.08 8.46 -89.69 -0.76 8.32 16 34 H 0.08 1.38 7.43 -2.39 -0.02 1.36 16 35 H 0.07 1.90 8.06 -2.39 -0.02 1.88 16 36 H 0.17 2.61 8.06 -2.91 -0.02 2.59 16 37 H 0.15 1.68 8.06 -2.91 -0.02 1.66 16 38 H 0.16 1.15 8.06 -2.91 -0.02 1.13 16 39 H 0.16 1.44 8.06 -2.91 -0.02 1.42 16 40 H 0.13 2.45 8.06 -2.91 -0.02 2.42 16 Total: -1.00 -73.67 344.07 1.82 -71.85 By element: Atomic # 1 Polarization: 12.26 SS G_CDS: 0.21 Total: 12.47 kcal Atomic # 6 Polarization: -52.54 SS G_CDS: 3.56 Total: -48.98 kcal Atomic # 7 Polarization: -82.42 SS G_CDS: -2.52 Total: -84.94 kcal Atomic # 14 Polarization: 47.54 SS G_CDS: 1.88 Total: 49.43 kcal Atomic # 16 Polarization: 1.48 SS G_CDS: -1.31 Total: 0.17 kcal Total: -73.67 1.82 -71.85 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172479312.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.509 kcal (2) G-P(sol) polarization free energy of solvation -73.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.847 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds