Wall clock time and date at job start Tue Mar 31 2020 06:08:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.46768 * 2 1 4 4 C 1.53000 * 109.47340 * 119.99567 * 2 1 3 5 5 C 1.52999 * 109.47158 * 185.00182 * 4 2 1 6 6 C 1.50702 * 109.46893 * 180.02562 * 5 4 2 7 7 H 1.07998 * 120.00250 * 359.97438 * 6 5 4 8 8 C 1.37875 * 120.00011 * 180.02562 * 6 5 4 9 9 N 1.31515 * 119.99631 * 359.97438 * 8 6 5 10 10 Si 1.86797 * 120.00112 * 180.02562 * 8 6 5 11 11 H 1.48495 * 109.47434 * 59.99594 * 10 8 6 12 12 H 1.48502 * 109.47135 * 179.97438 * 10 8 6 13 13 H 1.48499 * 109.46810 * 299.99539 * 10 8 6 14 14 N 1.46891 * 109.47233 * 240.00114 * 2 1 3 15 15 C 1.46896 * 111.00398 * 84.99696 * 14 2 1 16 16 C 1.50705 * 109.47429 * 179.97438 * 15 14 2 17 17 C 1.36123 * 119.77434 * 260.00089 * 16 15 14 18 18 C 1.38804 * 120.59311 * 179.97438 * 17 16 15 19 19 C 1.37502 * 120.18938 * 0.02562 * 18 17 16 20 20 C 1.39815 * 120.17717 * 359.97438 * 19 18 17 21 21 S 1.75902 * 130.56931 * 179.69145 * 20 19 18 22 22 C 1.75304 * 92.19486 * 179.97438 * 21 20 19 23 23 C 1.31821 * 111.40894 * 0.28925 * 22 21 20 24 24 C 1.39779 * 119.75539 * 359.97438 * 20 19 18 25 25 H 1.08997 * 109.46795 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.47083 * 300.00257 * 1 2 3 27 27 H 1.08999 * 109.47437 * 60.00080 * 1 2 3 28 28 H 1.09000 * 109.47282 * 305.00344 * 4 2 1 29 29 H 1.09002 * 109.46949 * 64.99814 * 4 2 1 30 30 H 1.09000 * 109.47156 * 300.00239 * 5 4 2 31 31 H 1.08998 * 109.47021 * 60.00135 * 5 4 2 32 32 H 0.97005 * 119.99670 * 180.02562 * 9 8 6 33 33 H 1.00903 * 110.99842 * 321.04019 * 14 2 1 34 34 H 1.09001 * 109.47070 * 60.00220 * 15 14 2 35 35 H 1.09001 * 109.47269 * 299.99739 * 15 14 2 36 36 H 1.08007 * 119.70417 * 359.97438 * 17 16 15 37 37 H 1.07996 * 119.90793 * 179.97438 * 18 17 16 38 38 H 1.07997 * 119.91478 * 180.02562 * 19 18 17 39 39 H 1.07994 * 124.29305 * 180.10242 * 22 21 20 40 40 H 1.08001 * 122.55161 * 179.75873 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7211 1.2493 5 6 3.5649 -0.6131 1.3137 6 6 4.0673 -1.3240 2.5439 7 1 3.3688 -1.8044 3.2131 8 6 5.4185 -1.3602 2.8157 9 7 6.2689 -0.7748 2.0010 10 14 6.0413 -2.2419 4.3401 11 1 5.6491 -3.6729 4.2793 12 1 7.5213 -2.1370 4.4028 13 1 5.4487 -1.6172 5.5500 14 7 2.0197 -0.6924 -1.1994 15 6 2.0824 0.2226 -2.3468 16 6 2.5886 -0.5216 -3.5557 17 6 3.8932 -0.4025 -3.9255 18 6 4.3775 -1.0806 -5.0356 19 6 3.5405 -1.8820 -5.7758 20 6 2.1969 -2.0188 -5.4140 21 16 0.9016 -2.9500 -6.1552 22 6 -0.2593 -2.4178 -4.9543 23 6 0.2937 -1.6024 -4.0785 24 6 1.7067 -1.3379 -4.2959 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 1.6054 -0.2616 2.1370 29 1 1.7517 -1.7714 1.2057 30 1 3.9995 -1.0726 0.4260 31 1 3.8532 0.4371 1.3573 32 1 7.2196 -0.8005 2.1921 33 1 1.4496 -1.4979 -1.4099 34 1 2.7588 1.0462 -2.1182 35 1 1.0870 0.6162 -2.5526 36 1 4.5574 0.2253 -3.3500 37 1 5.4144 -0.9778 -5.3193 38 1 3.9221 -2.4079 -6.6384 39 1 -1.2967 -2.7173 -4.9362 40 1 -0.2607 -1.1639 -3.2620 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172482863.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:24 Heat of formation + Delta-G solvation = 26.668269 kcal Electronic energy + Delta-G solvation = -20041.210987 eV Core-core repulsion = 17139.275798 eV Total energy + Delta-G solvation = -2901.935188 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 289.120 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.81774 -37.10611 -35.25844 -33.55386 -32.37640 -30.16684 -29.39518 -28.58553 -25.32168 -24.53695 -23.82619 -21.61932 -21.25669 -20.55628 -19.79235 -17.63447 -16.22748 -16.08403 -15.43343 -15.29365 -15.10856 -14.60599 -14.29007 -13.90186 -13.73667 -13.60023 -12.86765 -12.73938 -12.47932 -12.31425 -12.21982 -11.83080 -11.62781 -11.50321 -11.28379 -11.18312 -11.01113 -10.80472 -10.63485 -10.44532 -10.18663 -9.65103 -9.52801 -9.18488 -8.88846 -8.56010 -8.20605 -7.89508 -7.72183 -5.86040 -3.86880 0.67696 1.24899 1.44904 1.88677 2.23070 3.40211 3.44257 3.46939 3.66468 4.50938 4.56224 4.61740 4.79165 4.91310 5.07350 5.26669 5.27453 5.34836 5.41961 5.49475 5.54984 5.65312 5.67040 5.73701 5.83179 5.90152 5.99873 6.09648 6.24931 6.27580 6.40516 6.41482 6.65461 6.68492 6.86651 6.90633 7.32493 7.48938 7.79567 7.87039 8.10716 8.26495 8.60401 9.21838 9.75456 11.25020 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.018297 B = 0.003698 C = 0.003378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1529.919339 B = 7569.107202 C = 8286.688027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.083 3.917 3 H 0.073 0.927 4 C -0.098 4.098 5 C 0.030 3.970 6 C -0.519 4.519 7 H 0.050 0.950 8 C 0.057 3.943 9 N -0.895 5.895 10 Si 0.887 3.113 11 H -0.278 1.278 12 H -0.288 1.288 13 H -0.279 1.279 14 N -0.664 5.664 15 C 0.096 3.904 16 C -0.032 4.032 17 C -0.097 4.097 18 C -0.096 4.096 19 C -0.092 4.092 20 C -0.135 4.135 21 S 0.065 5.935 22 C -0.194 4.194 23 C -0.112 4.112 24 C -0.073 4.073 25 H 0.053 0.947 26 H 0.059 0.941 27 H 0.043 0.957 28 H 0.046 0.954 29 H 0.046 0.954 30 H 0.033 0.967 31 H 0.007 0.993 32 H 0.258 0.742 33 H 0.336 0.664 34 H 0.083 0.917 35 H 0.033 0.967 36 H 0.134 0.866 37 H 0.131 0.869 38 H 0.124 0.876 39 H 0.165 0.835 40 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.584 0.196 -17.543 21.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.026 4.026 3 H 0.091 0.909 4 C -0.136 4.136 5 C -0.007 4.007 6 C -0.557 4.557 7 H 0.068 0.932 8 C -0.144 4.144 9 N -0.535 5.535 10 Si 0.715 3.285 11 H -0.204 1.204 12 H -0.214 1.214 13 H -0.204 1.204 14 N -0.294 5.294 15 C -0.033 4.033 16 C -0.034 4.034 17 C -0.118 4.118 18 C -0.117 4.117 19 C -0.115 4.115 20 C -0.250 4.250 21 S 0.328 5.672 22 C -0.328 4.328 23 C -0.142 4.142 24 C -0.081 4.081 25 H 0.072 0.928 26 H 0.078 0.922 27 H 0.062 0.938 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.051 0.949 31 H 0.025 0.975 32 H 0.068 0.932 33 H 0.154 0.846 34 H 0.102 0.898 35 H 0.051 0.949 36 H 0.152 0.848 37 H 0.149 0.851 38 H 0.142 0.858 39 H 0.183 0.817 40 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -10.927 -0.650 -18.632 21.610 hybrid contribution -0.499 0.411 1.885 1.993 sum -11.426 -0.239 -16.747 20.275 Atomic orbital electron populations 1.22551 0.98687 1.01521 1.01284 1.21769 0.90872 0.98440 0.91511 0.90883 1.21627 1.00675 0.98360 0.92937 1.18989 0.88254 0.96437 0.97037 1.21317 0.91849 1.34074 1.08490 0.93210 1.24984 0.97123 0.95773 0.96477 1.69967 1.02163 1.44384 1.36943 0.86753 0.77574 0.80327 0.83865 1.20392 1.21399 1.20438 1.60566 1.57860 1.08674 1.02296 1.20943 0.99148 0.95070 0.88106 1.19462 0.93025 0.95913 0.94994 1.20725 0.94733 0.99799 0.96495 1.21089 0.99549 0.96089 0.94928 1.20419 0.90501 1.00053 1.00540 1.22603 0.98361 1.03637 1.00425 1.84012 0.99498 1.51950 1.31777 1.24956 1.03458 1.04324 1.00032 1.20937 0.92994 0.99758 1.00509 1.19149 0.93230 0.99716 0.96001 0.92801 0.92156 0.93774 0.93505 0.93525 0.94877 0.97507 0.93233 0.84621 0.89826 0.94881 0.84826 0.85117 0.85823 0.81744 0.84150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.39 9.16 37.16 0.34 -2.05 16 2 C 0.08 1.38 2.59 -67.72 -0.18 1.21 16 3 H 0.07 1.24 7.80 -51.93 -0.40 0.84 16 4 C -0.10 -2.03 4.83 -26.73 -0.13 -2.16 16 5 C 0.03 0.79 4.86 -27.88 -0.14 0.65 16 6 C -0.52 -15.12 9.11 -34.44 -0.31 -15.43 16 7 H 0.05 1.41 7.74 -52.49 -0.41 1.01 16 8 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 9 N -0.89 -27.50 13.29 55.43 0.74 -26.76 16 10 Si 0.89 22.21 29.54 -169.99 -5.02 17.19 16 11 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 12 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 13 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 14 N -0.66 -10.76 5.69 -108.00 -0.61 -11.38 16 15 C 0.10 1.34 5.33 -4.98 -0.03 1.31 16 16 C -0.03 -0.44 5.42 -104.28 -0.56 -1.01 16 17 C -0.10 -1.31 9.55 -40.13 -0.38 -1.70 16 18 C -0.10 -1.14 10.03 -39.64 -0.40 -1.54 16 19 C -0.09 -1.10 10.07 -39.26 -0.40 -1.49 16 20 C -0.14 -1.74 6.48 -38.42 -0.25 -1.99 16 21 S 0.07 0.70 23.23 -107.50 -2.50 -1.79 16 22 C -0.19 -1.98 11.02 28.84 0.32 -1.66 16 23 C -0.11 -1.28 9.86 -38.63 -0.38 -1.67 16 24 C -0.07 -0.98 5.98 -105.38 -0.63 -1.61 16 25 H 0.05 0.68 8.13 -51.93 -0.42 0.26 16 26 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.04 0.51 7.45 -51.93 -0.39 0.12 16 28 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 29 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.03 0.94 7.75 -51.93 -0.40 0.54 16 31 H 0.01 0.19 8.14 -51.93 -0.42 -0.24 16 32 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 33 H 0.34 5.17 8.46 -39.29 -0.33 4.84 16 34 H 0.08 1.19 7.87 -51.93 -0.41 0.78 16 35 H 0.03 0.41 7.09 -51.93 -0.37 0.04 16 36 H 0.13 1.76 7.99 -52.48 -0.42 1.34 16 37 H 0.13 1.24 8.06 -52.49 -0.42 0.81 16 38 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 39 H 0.17 1.22 8.06 -52.49 -0.42 0.80 16 40 H 0.14 1.43 7.85 -52.49 -0.41 1.01 16 LS Contribution 346.00 15.07 5.21 5.21 Total: -1.00 -31.72 346.00 -11.46 -43.18 By element: Atomic # 1 Polarization: 7.96 SS G_CDS: -6.06 Total: 1.90 kcal Atomic # 6 Polarization: -24.33 SS G_CDS: -3.22 Total: -27.55 kcal Atomic # 7 Polarization: -38.26 SS G_CDS: 0.12 Total: -38.14 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.19 kcal Atomic # 16 Polarization: 0.70 SS G_CDS: -2.50 Total: -1.79 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -31.72 -11.46 -43.18 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172482863.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.853 kcal (2) G-P(sol) polarization free energy of solvation -31.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.184 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds