Wall clock time and date at job start Tue Mar 31 2020 06:08:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.46768 * 2 1 4 4 C 1.53000 * 109.47340 * 119.99567 * 2 1 3 5 5 C 1.52999 * 109.47158 * 185.00182 * 4 2 1 6 6 C 1.50702 * 109.46893 * 180.02562 * 5 4 2 7 7 H 1.07998 * 120.00250 * 359.97438 * 6 5 4 8 8 C 1.37875 * 120.00011 * 180.02562 * 6 5 4 9 9 N 1.31515 * 119.99631 * 359.97438 * 8 6 5 10 10 Si 1.86797 * 120.00112 * 180.02562 * 8 6 5 11 11 H 1.48495 * 109.47434 * 59.99594 * 10 8 6 12 12 H 1.48502 * 109.47135 * 179.97438 * 10 8 6 13 13 H 1.48499 * 109.46810 * 299.99539 * 10 8 6 14 14 N 1.46891 * 109.47233 * 240.00114 * 2 1 3 15 15 C 1.46896 * 111.00398 * 84.99696 * 14 2 1 16 16 C 1.50705 * 109.47429 * 179.97438 * 15 14 2 17 17 C 1.36123 * 119.77434 * 260.00089 * 16 15 14 18 18 C 1.38804 * 120.59311 * 179.97438 * 17 16 15 19 19 C 1.37502 * 120.18938 * 0.02562 * 18 17 16 20 20 C 1.39815 * 120.17717 * 359.97438 * 19 18 17 21 21 S 1.75902 * 130.56931 * 179.69145 * 20 19 18 22 22 C 1.75304 * 92.19486 * 179.97438 * 21 20 19 23 23 C 1.31821 * 111.40894 * 0.28925 * 22 21 20 24 24 C 1.39779 * 119.75539 * 359.97438 * 20 19 18 25 25 H 1.08997 * 109.46795 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.47083 * 300.00257 * 1 2 3 27 27 H 1.08999 * 109.47437 * 60.00080 * 1 2 3 28 28 H 1.09000 * 109.47282 * 305.00344 * 4 2 1 29 29 H 1.09002 * 109.46949 * 64.99814 * 4 2 1 30 30 H 1.09000 * 109.47156 * 300.00239 * 5 4 2 31 31 H 1.08998 * 109.47021 * 60.00135 * 5 4 2 32 32 H 0.97005 * 119.99670 * 180.02562 * 9 8 6 33 33 H 1.00903 * 110.99842 * 321.04019 * 14 2 1 34 34 H 1.09001 * 109.47070 * 60.00220 * 15 14 2 35 35 H 1.09001 * 109.47269 * 299.99739 * 15 14 2 36 36 H 1.08007 * 119.70417 * 359.97438 * 17 16 15 37 37 H 1.07996 * 119.90793 * 179.97438 * 18 17 16 38 38 H 1.07997 * 119.91478 * 180.02562 * 19 18 17 39 39 H 1.07994 * 124.29305 * 180.10242 * 22 21 20 40 40 H 1.08001 * 122.55161 * 179.75873 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7211 1.2493 5 6 3.5649 -0.6131 1.3137 6 6 4.0673 -1.3240 2.5439 7 1 3.3688 -1.8044 3.2131 8 6 5.4185 -1.3602 2.8157 9 7 6.2689 -0.7748 2.0010 10 14 6.0413 -2.2419 4.3401 11 1 5.6491 -3.6729 4.2793 12 1 7.5213 -2.1370 4.4028 13 1 5.4487 -1.6172 5.5500 14 7 2.0197 -0.6924 -1.1994 15 6 2.0824 0.2226 -2.3468 16 6 2.5886 -0.5216 -3.5557 17 6 3.8932 -0.4025 -3.9255 18 6 4.3775 -1.0806 -5.0356 19 6 3.5405 -1.8820 -5.7758 20 6 2.1969 -2.0188 -5.4140 21 16 0.9016 -2.9500 -6.1552 22 6 -0.2593 -2.4178 -4.9543 23 6 0.2937 -1.6024 -4.0785 24 6 1.7067 -1.3379 -4.2959 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 1.6054 -0.2616 2.1370 29 1 1.7517 -1.7714 1.2057 30 1 3.9995 -1.0726 0.4260 31 1 3.8532 0.4371 1.3573 32 1 7.2196 -0.8005 2.1921 33 1 1.4496 -1.4979 -1.4099 34 1 2.7588 1.0462 -2.1182 35 1 1.0870 0.6162 -2.5526 36 1 4.5574 0.2253 -3.3500 37 1 5.4144 -0.9778 -5.3193 38 1 3.9221 -2.4079 -6.6384 39 1 -1.2967 -2.7173 -4.9362 40 1 -0.2607 -1.1639 -3.2620 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172482863.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:24 Heat of formation + Delta-G solvation = 9.404543 kcal Electronic energy + Delta-G solvation = -20041.959598 eV Core-core repulsion = 17139.275798 eV Total energy + Delta-G solvation = -2902.683800 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 289.120 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.77390 -38.43144 -36.13331 -35.40678 -33.93237 -31.73872 -30.46655 -29.78989 -27.03134 -25.87611 -24.73456 -23.17642 -22.50539 -21.44582 -21.34499 -18.58593 -18.31336 -17.18382 -16.59551 -16.49257 -16.36357 -16.05393 -15.64790 -14.97211 -14.75474 -14.66969 -14.39796 -14.10123 -13.90714 -13.62563 -13.34083 -13.19056 -13.01221 -12.81963 -12.67809 -12.58427 -12.34967 -12.20745 -12.01615 -11.79782 -11.52085 -11.51299 -11.20401 -10.95105 -10.52881 -10.45844 -9.48401 -9.11734 -8.62299 -8.12121 -6.22410 -0.22506 0.25570 0.59196 1.03340 1.35900 1.40063 1.43499 1.51042 2.44685 2.66848 3.19993 3.45349 3.67298 3.81317 3.94304 4.07959 4.16438 4.26757 4.37813 4.42081 4.48408 4.51793 4.63904 4.79206 4.82050 4.88007 4.98814 5.00506 5.05985 5.08351 5.11704 5.29576 5.36316 5.45972 5.48347 5.60383 5.66357 5.89194 5.92142 6.04888 6.25837 6.36440 6.59355 6.97240 7.45403 8.98892 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.018297 B = 0.003698 C = 0.003378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1529.919339 B = 7569.107202 C = 8286.688027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.090 3.910 3 H 0.063 0.937 4 C -0.088 4.088 5 C 0.039 3.961 6 C -0.545 4.545 7 H 0.054 0.946 8 C 0.000 4.000 9 N -0.931 5.931 10 Si 0.959 3.041 11 H -0.269 1.269 12 H -0.283 1.283 13 H -0.267 1.267 14 N -0.684 5.684 15 C 0.105 3.895 16 C -0.049 4.049 17 C -0.117 4.117 18 C -0.103 4.103 19 C -0.094 4.094 20 C -0.160 4.160 21 S 0.085 5.915 22 C -0.184 4.184 23 C -0.130 4.130 24 C -0.085 4.085 25 H 0.061 0.939 26 H 0.066 0.934 27 H 0.065 0.935 28 H 0.051 0.949 29 H 0.044 0.956 30 H 0.003 0.997 31 H -0.022 1.022 32 H 0.261 0.739 33 H 0.340 0.660 34 H 0.070 0.930 35 H 0.053 0.947 36 H 0.125 0.875 37 H 0.152 0.848 38 H 0.147 0.853 39 H 0.196 0.804 40 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.254 -0.855 -17.768 22.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.019 4.019 3 H 0.082 0.918 4 C -0.126 4.126 5 C 0.002 3.998 6 C -0.583 4.583 7 H 0.072 0.928 8 C -0.198 4.198 9 N -0.572 5.572 10 Si 0.784 3.216 11 H -0.194 1.194 12 H -0.208 1.208 13 H -0.192 1.192 14 N -0.315 5.315 15 C -0.024 4.024 16 C -0.052 4.052 17 C -0.137 4.137 18 C -0.124 4.124 19 C -0.117 4.117 20 C -0.275 4.275 21 S 0.348 5.652 22 C -0.318 4.318 23 C -0.159 4.159 24 C -0.094 4.094 25 H 0.080 0.920 26 H 0.085 0.915 27 H 0.084 0.916 28 H 0.069 0.931 29 H 0.063 0.937 30 H 0.021 0.979 31 H -0.004 1.004 32 H 0.069 0.931 33 H 0.159 0.841 34 H 0.089 0.911 35 H 0.071 0.929 36 H 0.143 0.857 37 H 0.170 0.830 38 H 0.165 0.835 39 H 0.213 0.787 40 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -12.617 -1.700 -18.863 22.757 hybrid contribution 0.033 0.717 1.882 2.014 sum -12.584 -0.984 -16.981 21.159 Atomic orbital electron populations 1.22396 0.95266 1.02481 1.02654 1.21547 0.93457 0.97041 0.89880 0.91848 1.21455 0.96578 0.98950 0.95606 1.18811 0.92191 0.93844 0.94937 1.21795 0.92529 1.34469 1.09486 0.92750 1.25933 0.97390 0.96489 0.99942 1.70115 1.02522 1.45589 1.38965 0.85594 0.77038 0.79231 0.79719 1.19437 1.20845 1.19186 1.60434 1.58565 1.09531 1.03009 1.20843 0.99844 0.94284 0.87401 1.19510 0.93427 0.96863 0.95352 1.20864 0.94927 1.00511 0.97434 1.21333 1.00748 0.95853 0.94425 1.20747 0.90331 0.99636 1.00960 1.22972 0.99424 1.04251 1.00846 1.83926 0.98674 1.51107 1.31510 1.25365 1.04649 1.02929 0.98822 1.21058 0.92247 1.00927 1.01704 1.19396 0.94258 0.99595 0.96120 0.92021 0.91544 0.91636 0.93076 0.93714 0.97898 1.00396 0.93068 0.84094 0.91144 0.92920 0.85698 0.83030 0.83547 0.78728 0.82914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.08 9.16 71.98 0.66 -3.42 16 2 C 0.09 2.97 2.59 44.92 0.12 3.09 16 3 H 0.06 2.20 7.80 -2.39 -0.02 2.18 16 4 C -0.09 -3.68 4.83 30.59 0.15 -3.53 16 5 C 0.04 2.16 4.86 29.85 0.15 2.30 16 6 C -0.54 -32.30 9.11 25.60 0.23 -32.06 16 7 H 0.05 3.09 7.74 -2.91 -0.02 3.07 16 8 C 0.00 -0.01 5.46 84.65 0.46 0.45 16 9 N -0.93 -58.62 13.29 21.45 0.28 -58.33 16 10 Si 0.96 45.72 29.54 68.60 2.03 47.74 16 11 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 12 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 13 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 14 N -0.68 -22.43 5.69 -495.59 -2.82 -25.25 16 15 C 0.10 2.96 5.33 85.56 0.46 3.42 16 16 C -0.05 -1.40 5.42 -19.64 -0.11 -1.51 16 17 C -0.12 -3.31 9.55 21.91 0.21 -3.10 16 18 C -0.10 -2.47 10.03 22.23 0.22 -2.25 16 19 C -0.09 -2.17 10.07 22.48 0.23 -1.94 16 20 C -0.16 -3.98 6.48 23.02 0.15 -3.83 16 21 S 0.09 1.67 23.23 -56.49 -1.31 0.36 16 22 C -0.18 -3.27 11.02 67.04 0.74 -2.54 16 23 C -0.13 -2.75 9.86 23.33 0.23 -2.52 16 24 C -0.09 -2.24 5.98 -20.35 -0.12 -2.36 16 25 H 0.06 1.41 8.13 -2.39 -0.02 1.39 16 26 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 27 H 0.06 1.32 7.45 -2.39 -0.02 1.30 16 28 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 29 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 30 H 0.00 0.16 7.75 -2.39 -0.02 0.14 16 31 H -0.02 -1.33 8.14 -2.39 -0.02 -1.35 16 32 H 0.26 15.44 8.31 -92.70 -0.77 14.67 16 33 H 0.34 10.37 8.46 -89.69 -0.76 9.61 16 34 H 0.07 2.12 7.87 -2.39 -0.02 2.11 16 35 H 0.05 1.26 7.09 -2.39 -0.02 1.24 16 36 H 0.13 3.60 7.99 -2.91 -0.02 3.58 16 37 H 0.15 2.82 8.06 -2.91 -0.02 2.80 16 38 H 0.15 2.57 8.06 -2.91 -0.02 2.54 16 39 H 0.20 2.16 8.06 -2.91 -0.02 2.14 16 40 H 0.15 2.76 7.85 -2.91 -0.02 2.73 16 Total: -1.00 -69.48 346.00 2.21 -67.27 By element: Atomic # 1 Polarization: 17.73 SS G_CDS: 0.26 Total: 18.00 kcal Atomic # 6 Polarization: -53.56 SS G_CDS: 3.77 Total: -49.79 kcal Atomic # 7 Polarization: -81.04 SS G_CDS: -2.54 Total: -83.58 kcal Atomic # 14 Polarization: 45.72 SS G_CDS: 2.03 Total: 47.74 kcal Atomic # 16 Polarization: 1.67 SS G_CDS: -1.31 Total: 0.36 kcal Total: -69.48 2.21 -67.27 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172482863.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.676 kcal (2) G-P(sol) polarization free energy of solvation -69.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.271 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds