Wall clock time and date at job start Tue Mar 31 2020 06:46:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86805 * 120.00209 * 2 1 4 4 H 1.48501 * 109.47428 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47267 * 300.00542 * 3 2 1 6 6 H 1.48510 * 109.46738 * 60.00145 * 3 2 1 7 7 C 1.37878 * 120.00129 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00289 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99713 * 359.97438 * 7 2 1 10 10 C 1.53004 * 109.46916 * 180.02562 * 9 7 2 11 11 C 1.53007 * 109.47061 * 179.97438 * 10 9 7 12 12 N 1.46496 * 109.46951 * 180.02562 * 11 10 9 13 13 C 1.34778 * 119.99714 * 179.97438 * 12 11 10 14 14 O 1.21279 * 120.00349 * 0.02562 * 13 12 11 15 15 C 1.50709 * 119.99845 * 180.02562 * 13 12 11 16 16 C 1.50696 * 109.46937 * 180.02562 * 15 13 12 17 17 C 1.38285 * 119.82433 * 269.99942 * 16 15 13 18 18 C 1.38349 * 119.76793 * 179.85086 * 17 16 15 19 19 C 1.37748 * 119.97686 * 359.94996 * 18 17 16 20 20 C 1.38879 * 120.78753 * 0.30989 * 19 18 17 21 21 C 1.37928 * 119.82300 * 89.99927 * 16 15 13 22 22 O 1.36135 * 111.24232 * 179.28627 * 20 19 18 23 23 C 1.43766 * 109.25562 * 18.85580 * 22 20 19 24 24 C 1.51644 * 132.17285 * 180.54457 * 19 18 17 25 25 H 0.97003 * 120.00012 * 359.97438 * 1 2 3 26 26 H 1.08997 * 109.47627 * 60.00568 * 9 7 2 27 27 H 1.09002 * 109.47046 * 299.99936 * 9 7 2 28 28 H 1.09006 * 109.47144 * 60.00408 * 10 9 7 29 29 H 1.08994 * 109.47263 * 300.00042 * 10 9 7 30 30 H 1.08998 * 109.46908 * 59.99956 * 11 10 9 31 31 H 1.09002 * 109.47035 * 299.99896 * 11 10 9 32 32 H 0.97000 * 120.00032 * 0.02562 * 12 11 10 33 33 H 1.08997 * 109.46710 * 59.99989 * 15 13 12 34 34 H 1.09002 * 109.46989 * 299.99954 * 15 13 12 35 35 H 1.08000 * 120.11603 * 359.87245 * 17 16 15 36 36 H 1.07997 * 120.01662 * 179.97438 * 18 17 16 37 37 H 1.08003 * 119.88307 * 0.37114 * 21 16 15 38 38 H 1.08996 * 110.74720 * 90.66122 * 23 22 20 39 39 H 1.09003 * 110.75065 * 213.82566 * 23 22 20 40 40 H 1.09001 * 110.94056 * 46.13111 * 24 19 18 41 41 H 1.09001 * 110.93764 * 282.44045 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8904 2.3966 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2452 -3.6620 -0.0005 11 6 1.4802 -4.9871 0.0001 12 7 2.4322 -6.1006 0.0007 13 6 1.9829 -7.3713 0.0019 14 8 0.7906 -7.5929 0.0019 15 6 2.9623 -8.5168 0.0031 16 6 2.2088 -9.8218 0.0036 17 6 1.8643 -10.4166 1.2035 18 6 1.1698 -11.6132 1.2027 19 6 0.8233 -12.2069 0.0090 20 6 1.1682 -11.6220 -1.2024 21 6 1.8663 -10.4166 -1.1928 22 8 0.7450 -12.3772 -2.2530 23 6 -0.2806 -13.2798 -1.8054 24 6 0.0697 -13.4830 -0.3123 25 1 -0.4850 0.8401 0.0004 26 1 0.6240 -2.5567 -0.8903 27 1 0.6247 -2.5570 0.8897 28 1 2.8719 -3.6043 0.8895 29 1 2.8719 -3.6043 -0.8905 30 1 0.8533 -5.0451 -0.8896 31 1 0.8539 -5.0446 0.8904 32 1 3.3859 -5.9233 0.0011 33 1 3.5888 -8.4581 0.8931 34 1 3.5891 -8.4598 -0.8869 35 1 2.1362 -9.9485 2.1381 36 1 0.8992 -12.0814 2.1374 37 1 2.1444 -9.9485 -2.1255 38 1 -1.2666 -12.8276 -1.9126 39 1 -0.2289 -14.2232 -2.3489 40 1 -0.8336 -13.5648 0.2922 41 1 0.7075 -14.3565 -0.1772 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001182653285.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:54 Heat of formation + Delta-G solvation = -63.966869 kcal Electronic energy + Delta-G solvation = -21386.318803 eV Core-core repulsion = 18037.700510 eV Total energy + Delta-G solvation = -3348.618294 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.28694 -39.62267 -37.66864 -35.37867 -33.44691 -33.28617 -31.59427 -30.83630 -30.23803 -27.74205 -26.21848 -23.64396 -23.00627 -22.34533 -21.44100 -20.70812 -19.84281 -17.29383 -16.98757 -16.85913 -16.45959 -16.39802 -15.84547 -15.33860 -15.07121 -14.46274 -14.41707 -13.97361 -13.66197 -13.57031 -13.37352 -13.06716 -12.55688 -12.29793 -12.21756 -12.04672 -11.87897 -11.79483 -11.58917 -11.05277 -10.99247 -10.92355 -10.73733 -10.57514 -9.89126 -9.87414 -9.39990 -9.11967 -8.90720 -8.76523 -8.38228 -8.27091 -6.02490 -4.05595 1.06612 1.24934 2.79519 2.98134 3.29464 3.34142 3.37159 3.40664 3.69421 4.13986 4.31005 4.43793 4.53103 4.66681 4.70378 4.84092 5.01254 5.11194 5.15169 5.21939 5.31378 5.33352 5.38203 5.42367 5.53385 5.73019 5.78147 5.87992 6.11248 6.16479 6.22499 6.32082 6.44661 6.49562 6.59855 6.83577 7.00172 7.01068 7.63240 7.71918 7.75577 7.96399 8.36657 8.42209 9.01401 9.58688 11.08837 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.041861 B = 0.002188 C = 0.002159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 668.718027 B =12793.000504 C =12968.019712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.056 3.944 3 Si 0.893 3.107 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.522 4.522 8 H 0.056 0.944 9 C 0.023 3.977 10 C -0.120 4.120 11 C 0.116 3.884 12 N -0.727 5.727 13 C 0.508 3.492 14 O -0.535 6.535 15 C -0.104 4.104 16 C -0.027 4.027 17 C -0.132 4.132 18 C -0.069 4.069 19 C -0.179 4.179 20 C 0.104 3.896 21 C -0.122 4.122 22 O -0.307 6.307 23 C 0.051 3.949 24 C -0.109 4.109 25 H 0.261 0.739 26 H 0.019 0.981 27 H 0.019 0.981 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.398 0.602 33 H 0.106 0.894 34 H 0.104 0.896 35 H 0.127 0.873 36 H 0.124 0.876 37 H 0.127 0.873 38 H 0.077 0.923 39 H 0.105 0.895 40 H 0.090 0.910 41 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.109 -27.683 0.378 28.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.146 4.146 3 Si 0.721 3.279 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.560 4.560 8 H 0.074 0.926 9 C -0.015 4.015 10 C -0.158 4.158 11 C -0.006 4.006 12 N -0.379 5.379 13 C 0.293 3.707 14 O -0.412 6.412 15 C -0.144 4.144 16 C -0.027 4.027 17 C -0.150 4.150 18 C -0.087 4.087 19 C -0.180 4.180 20 C 0.060 3.940 21 C -0.141 4.141 22 O -0.221 6.221 23 C -0.024 4.024 24 C -0.146 4.146 25 H 0.070 0.930 26 H 0.037 0.963 27 H 0.037 0.963 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.232 0.768 33 H 0.124 0.876 34 H 0.122 0.878 35 H 0.145 0.855 36 H 0.142 0.858 37 H 0.145 0.855 38 H 0.095 0.905 39 H 0.123 0.877 40 H 0.109 0.891 41 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 4.137 -27.715 0.136 28.023 hybrid contribution 0.711 1.033 0.111 1.259 sum 4.848 -26.682 0.247 27.120 Atomic orbital electron populations 1.69975 1.06067 1.26584 1.50641 1.25041 0.94866 0.99344 0.95302 0.86525 0.80038 0.83746 0.77601 1.19753 1.20996 1.21007 1.21241 0.93026 0.90926 1.50798 0.92578 1.19039 0.93878 0.90904 0.97656 1.21887 0.99744 0.93353 1.00860 1.21638 0.91900 0.85127 1.01951 1.46213 1.10797 1.05861 1.74995 1.20423 0.89620 0.83847 0.76797 1.90734 1.16785 1.84695 1.48949 1.20714 0.97674 0.90490 1.05537 1.18947 0.97122 0.94212 0.92445 1.20871 1.00588 0.95949 0.97569 1.20216 0.97154 0.94977 0.96343 1.20733 1.05521 0.97811 0.93964 1.19437 0.96523 0.91904 0.86181 1.20028 1.02670 0.92795 0.98571 1.86816 1.53073 1.49442 1.32767 1.23822 0.91077 0.93496 0.93991 1.21768 1.00603 0.95962 0.96256 0.92973 0.96279 0.96290 0.92728 0.92718 0.91832 0.91834 0.76788 0.87609 0.87765 0.85485 0.85788 0.85546 0.90508 0.87693 0.89120 0.89317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.88 13.29 55.43 0.74 -26.15 16 2 C 0.06 1.59 5.46 -17.82 -0.10 1.50 16 3 Si 0.89 21.48 29.54 -169.99 -5.02 16.46 16 4 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 5 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 7 C -0.52 -14.56 9.11 -34.44 -0.31 -14.87 16 8 H 0.06 1.51 7.74 -52.48 -0.41 1.10 16 9 C 0.02 0.58 4.97 -27.88 -0.14 0.44 16 10 C -0.12 -2.34 5.27 -26.73 -0.14 -2.48 16 11 C 0.12 2.05 5.67 -4.04 -0.02 2.02 16 12 N -0.73 -10.03 5.56 -60.29 -0.33 -10.36 16 13 C 0.51 7.25 7.82 -10.98 -0.09 7.17 16 14 O -0.54 -10.12 16.03 5.56 0.09 -10.03 16 15 C -0.10 -1.02 5.82 -29.03 -0.17 -1.19 16 16 C -0.03 -0.31 4.36 -104.72 -0.46 -0.77 16 17 C -0.13 -1.43 9.71 -39.52 -0.38 -1.82 16 18 C -0.07 -0.71 10.03 -39.72 -0.40 -1.11 16 19 C -0.18 -1.94 6.27 -104.10 -0.65 -2.59 16 20 C 0.10 1.30 7.04 -38.95 -0.27 1.03 16 21 C -0.12 -1.52 9.70 -39.30 -0.38 -1.90 16 22 O -0.31 -3.64 11.10 -20.17 -0.22 -3.87 16 23 C 0.05 0.40 8.01 38.05 0.30 0.70 16 24 C -0.11 -0.81 7.12 -26.52 -0.19 -1.00 16 25 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 26 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 29 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 30 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 31 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 32 H 0.40 4.22 8.47 -40.82 -0.35 3.87 16 33 H 0.11 0.76 8.08 -51.93 -0.42 0.34 16 34 H 0.10 0.79 8.08 -51.93 -0.42 0.37 16 35 H 0.13 1.16 8.06 -52.49 -0.42 0.73 16 36 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 37 H 0.13 1.45 8.06 -52.48 -0.42 1.03 16 38 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 LS Contribution 349.49 15.07 5.27 5.27 Total: -1.00 -34.77 349.49 -9.11 -43.88 By element: Atomic # 1 Polarization: 5.88 SS G_CDS: -6.22 Total: -0.34 kcal Atomic # 6 Polarization: -11.46 SS G_CDS: -3.40 Total: -14.86 kcal Atomic # 7 Polarization: -36.91 SS G_CDS: 0.40 Total: -36.51 kcal Atomic # 8 Polarization: -13.76 SS G_CDS: -0.13 Total: -13.90 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -34.77 -9.11 -43.88 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001182653285.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.083 kcal (2) G-P(sol) polarization free energy of solvation -34.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.884 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds