Wall clock time and date at job start Tue Mar 31 2020 06:46:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86805 * 120.00209 * 2 1 4 4 H 1.48501 * 109.47428 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47267 * 300.00542 * 3 2 1 6 6 H 1.48510 * 109.46738 * 60.00145 * 3 2 1 7 7 C 1.37878 * 120.00129 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00289 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99713 * 359.97438 * 7 2 1 10 10 C 1.53004 * 109.46916 * 180.02562 * 9 7 2 11 11 C 1.53007 * 109.47061 * 179.97438 * 10 9 7 12 12 N 1.46496 * 109.46951 * 180.02562 * 11 10 9 13 13 C 1.34778 * 119.99714 * 179.97438 * 12 11 10 14 14 O 1.21279 * 120.00349 * 0.02562 * 13 12 11 15 15 C 1.50709 * 119.99845 * 180.02562 * 13 12 11 16 16 C 1.50696 * 109.46937 * 180.02562 * 15 13 12 17 17 C 1.38285 * 119.82433 * 269.99942 * 16 15 13 18 18 C 1.38349 * 119.76793 * 179.85086 * 17 16 15 19 19 C 1.37748 * 119.97686 * 359.94996 * 18 17 16 20 20 C 1.38879 * 120.78753 * 0.30989 * 19 18 17 21 21 C 1.37928 * 119.82300 * 89.99927 * 16 15 13 22 22 O 1.36135 * 111.24232 * 179.28627 * 20 19 18 23 23 C 1.43766 * 109.25562 * 18.85580 * 22 20 19 24 24 C 1.51644 * 132.17285 * 180.54457 * 19 18 17 25 25 H 0.97003 * 120.00012 * 359.97438 * 1 2 3 26 26 H 1.08997 * 109.47627 * 60.00568 * 9 7 2 27 27 H 1.09002 * 109.47046 * 299.99936 * 9 7 2 28 28 H 1.09006 * 109.47144 * 60.00408 * 10 9 7 29 29 H 1.08994 * 109.47263 * 300.00042 * 10 9 7 30 30 H 1.08998 * 109.46908 * 59.99956 * 11 10 9 31 31 H 1.09002 * 109.47035 * 299.99896 * 11 10 9 32 32 H 0.97000 * 120.00032 * 0.02562 * 12 11 10 33 33 H 1.08997 * 109.46710 * 59.99989 * 15 13 12 34 34 H 1.09002 * 109.46989 * 299.99954 * 15 13 12 35 35 H 1.08000 * 120.11603 * 359.87245 * 17 16 15 36 36 H 1.07997 * 120.01662 * 179.97438 * 18 17 16 37 37 H 1.08003 * 119.88307 * 0.37114 * 21 16 15 38 38 H 1.08996 * 110.74720 * 90.66122 * 23 22 20 39 39 H 1.09003 * 110.75065 * 213.82566 * 23 22 20 40 40 H 1.09001 * 110.94056 * 46.13111 * 24 19 18 41 41 H 1.09001 * 110.93764 * 282.44045 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8904 2.3966 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2452 -3.6620 -0.0005 11 6 1.4802 -4.9871 0.0001 12 7 2.4322 -6.1006 0.0007 13 6 1.9829 -7.3713 0.0019 14 8 0.7906 -7.5929 0.0019 15 6 2.9623 -8.5168 0.0031 16 6 2.2088 -9.8218 0.0036 17 6 1.8643 -10.4166 1.2035 18 6 1.1698 -11.6132 1.2027 19 6 0.8233 -12.2069 0.0090 20 6 1.1682 -11.6220 -1.2024 21 6 1.8663 -10.4166 -1.1928 22 8 0.7450 -12.3772 -2.2530 23 6 -0.2806 -13.2798 -1.8054 24 6 0.0697 -13.4830 -0.3123 25 1 -0.4850 0.8401 0.0004 26 1 0.6240 -2.5567 -0.8903 27 1 0.6247 -2.5570 0.8897 28 1 2.8719 -3.6043 0.8895 29 1 2.8719 -3.6043 -0.8905 30 1 0.8533 -5.0451 -0.8896 31 1 0.8539 -5.0446 0.8904 32 1 3.3859 -5.9233 0.0011 33 1 3.5888 -8.4581 0.8931 34 1 3.5891 -8.4598 -0.8869 35 1 2.1362 -9.9485 2.1381 36 1 0.8992 -12.0814 2.1374 37 1 2.1444 -9.9485 -2.1255 38 1 -1.2666 -12.8276 -1.9126 39 1 -0.2289 -14.2232 -2.3489 40 1 -0.8336 -13.5648 0.2922 41 1 0.7075 -14.3565 -0.1772 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001182653285.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:54 Heat of formation + Delta-G solvation = -86.557199 kcal Electronic energy + Delta-G solvation = -21387.298394 eV Core-core repulsion = 18037.700510 eV Total energy + Delta-G solvation = -3349.597884 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.04898 -40.76161 -38.53018 -36.90929 -35.17466 -34.22472 -33.09798 -31.87890 -31.02490 -29.04639 -27.60882 -25.00249 -24.13556 -23.11612 -22.34922 -22.29953 -21.08799 -18.58672 -18.05210 -17.93324 -17.72401 -17.18030 -16.93037 -16.66613 -16.44891 -16.07945 -15.53263 -14.99135 -14.80189 -14.49295 -14.26307 -14.05995 -13.87349 -13.69736 -13.58395 -13.28951 -12.88750 -12.76000 -12.65125 -12.54560 -12.53108 -12.33609 -11.78696 -11.73348 -11.67163 -11.58335 -11.22491 -10.84940 -10.56729 -10.06634 -9.74671 -9.07394 -8.19939 -6.31497 0.25096 0.41758 1.41790 1.41906 1.55284 1.68123 2.15035 2.38464 2.44113 2.79808 3.13883 3.48524 3.65338 3.76226 3.95359 4.03932 4.12947 4.15709 4.22743 4.24157 4.38619 4.52050 4.56039 4.58616 4.63529 4.67825 4.86768 4.90052 4.95089 5.01356 5.13194 5.17632 5.30174 5.43303 5.46207 5.53775 5.54175 5.67334 5.70581 5.84107 6.21843 6.22753 6.63411 6.86659 7.32072 7.38319 8.92449 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.041861 B = 0.002188 C = 0.002159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 668.718027 B =12793.000504 C =12968.019712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.006 4.006 3 Si 0.968 3.032 4 H -0.257 1.257 5 H -0.281 1.281 6 H -0.280 1.280 7 C -0.539 4.539 8 H 0.068 0.932 9 C 0.022 3.978 10 C -0.101 4.101 11 C 0.130 3.870 12 N -0.715 5.715 13 C 0.507 3.493 14 O -0.587 6.587 15 C -0.092 4.092 16 C -0.042 4.042 17 C -0.141 4.141 18 C -0.076 4.076 19 C -0.189 4.189 20 C 0.077 3.923 21 C -0.145 4.145 22 O -0.330 6.330 23 C 0.042 3.958 24 C -0.104 4.104 25 H 0.263 0.737 26 H -0.010 1.010 27 H -0.009 1.009 28 H 0.070 0.930 29 H 0.068 0.932 30 H 0.044 0.956 31 H 0.047 0.953 32 H 0.418 0.582 33 H 0.141 0.859 34 H 0.131 0.869 35 H 0.145 0.855 36 H 0.149 0.851 37 H 0.124 0.876 38 H 0.078 0.922 39 H 0.133 0.867 40 H 0.108 0.892 41 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.261 -28.565 1.095 29.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.203 4.203 3 Si 0.793 3.207 4 H -0.181 1.181 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.577 4.577 8 H 0.086 0.914 9 C -0.016 4.016 10 C -0.139 4.139 11 C 0.006 3.994 12 N -0.367 5.367 13 C 0.295 3.705 14 O -0.467 6.467 15 C -0.131 4.131 16 C -0.043 4.043 17 C -0.159 4.159 18 C -0.094 4.094 19 C -0.189 4.189 20 C 0.033 3.967 21 C -0.164 4.164 22 O -0.245 6.245 23 C -0.032 4.032 24 C -0.140 4.140 25 H 0.072 0.928 26 H 0.008 0.992 27 H 0.009 0.991 28 H 0.089 0.911 29 H 0.087 0.913 30 H 0.062 0.938 31 H 0.065 0.935 32 H 0.255 0.745 33 H 0.159 0.841 34 H 0.149 0.851 35 H 0.162 0.838 36 H 0.167 0.833 37 H 0.142 0.858 38 H 0.096 0.904 39 H 0.151 0.849 40 H 0.126 0.874 41 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 6.343 -28.614 0.852 29.321 hybrid contribution -0.023 1.243 -0.121 1.249 sum 6.320 -27.371 0.731 28.101 Atomic orbital electron populations 1.70122 1.07995 1.27729 1.51818 1.26058 0.95769 1.03677 0.94840 0.85347 0.79240 0.78538 0.77583 1.18061 1.20649 1.20596 1.21718 0.93798 0.91942 1.50223 0.91389 1.18964 0.94517 0.93178 0.94941 1.21592 0.98361 0.91678 1.02241 1.21187 0.92088 0.85830 1.00337 1.45972 1.11211 1.04909 1.74639 1.21221 0.89682 0.84543 0.75072 1.90718 1.19373 1.85393 1.51221 1.20748 0.96590 0.87279 1.08502 1.19188 0.97678 0.94965 0.92426 1.21223 1.00366 0.96295 0.98060 1.20587 0.96647 0.94913 0.97272 1.21191 1.05221 0.98965 0.93571 1.19755 0.97355 0.92466 0.87164 1.20259 1.03545 0.93463 0.99090 1.86774 1.54166 1.50114 1.33461 1.24138 0.90258 0.93974 0.94808 1.21859 1.01217 0.94975 0.95992 0.92834 0.99179 0.99054 0.91123 0.91298 0.93757 0.93473 0.74460 0.84105 0.85105 0.83764 0.83308 0.85750 0.90421 0.84909 0.87401 0.87585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.53 13.29 21.45 0.28 -57.24 16 2 C -0.01 -0.34 5.46 84.66 0.46 0.12 16 3 Si 0.97 43.82 29.54 68.60 2.03 45.85 16 4 H -0.26 -10.87 7.11 99.48 0.71 -10.16 16 5 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 6 H -0.28 -12.42 7.11 99.48 0.71 -11.72 16 7 C -0.54 -30.06 9.11 25.60 0.23 -29.82 16 8 H 0.07 3.55 7.74 -2.91 -0.02 3.53 16 9 C 0.02 1.13 4.97 29.85 0.15 1.28 16 10 C -0.10 -3.84 5.27 30.60 0.16 -3.68 16 11 C 0.13 4.58 5.67 86.38 0.49 5.07 16 12 N -0.71 -18.62 5.56 -463.05 -2.57 -21.19 16 13 C 0.51 13.95 7.82 87.66 0.69 14.64 16 14 O -0.59 -22.51 16.03 -3.03 -0.05 -22.56 16 15 C -0.09 -1.59 5.82 29.10 0.17 -1.42 16 16 C -0.04 -0.94 4.36 -19.93 -0.09 -1.03 16 17 C -0.14 -2.89 9.71 22.31 0.22 -2.67 16 18 C -0.08 -1.46 10.03 22.18 0.22 -1.24 16 19 C -0.19 -3.92 6.27 -19.53 -0.12 -4.04 16 20 C 0.08 1.95 7.04 22.68 0.16 2.11 16 21 C -0.14 -3.65 9.70 22.45 0.22 -3.43 16 22 O -0.33 -7.90 11.10 -95.08 -1.06 -8.96 16 23 C 0.04 0.62 8.01 72.56 0.58 1.20 16 24 C -0.10 -1.37 7.12 30.73 0.22 -1.15 16 25 H 0.26 15.14 8.31 -92.71 -0.77 14.37 16 26 H -0.01 -0.58 8.14 -2.39 -0.02 -0.60 16 27 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 28 H 0.07 2.48 8.14 -2.38 -0.02 2.46 16 29 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 30 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 31 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 32 H 0.42 7.63 8.47 -92.71 -0.79 6.84 16 33 H 0.14 1.47 8.08 -2.39 -0.02 1.45 16 34 H 0.13 1.59 8.08 -2.39 -0.02 1.57 16 35 H 0.14 2.31 8.06 -2.91 -0.02 2.29 16 36 H 0.15 1.97 8.06 -2.91 -0.02 1.95 16 37 H 0.12 2.96 8.06 -2.91 -0.02 2.94 16 38 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 39 H 0.13 1.10 8.14 -2.39 -0.02 1.08 16 40 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16 41 H 0.11 1.03 8.14 -2.39 -0.02 1.01 16 Total: -1.00 -78.09 349.49 2.63 -75.46 By element: Atomic # 1 Polarization: 12.48 SS G_CDS: 0.24 Total: 12.72 kcal Atomic # 6 Polarization: -27.83 SS G_CDS: 3.76 Total: -24.07 kcal Atomic # 7 Polarization: -76.15 SS G_CDS: -2.29 Total: -78.44 kcal Atomic # 8 Polarization: -30.42 SS G_CDS: -1.10 Total: -31.52 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.85 kcal Total: -78.09 2.63 -75.46 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001182653285.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.098 kcal (2) G-P(sol) polarization free energy of solvation -78.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.459 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds